Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001024

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_001023 and ABIE53_001024 are separated by 521 nucleotidesABIE53_001024 and ABIE53_001025 overlap by 8 nucleotides ABIE53_001023: ABIE53_001023 - hypothetical protein, at 1,123,958 to 1,124,689 _001023 ABIE53_001024: ABIE53_001024 - hypothetical protein, at 1,125,211 to 1,126,185 _001024 ABIE53_001025: ABIE53_001025 - ESS family glutamate:Na+ symporter, at 1,126,178 to 1,127,560 _001025 Position (kb) 1125 1126 1127Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1124.285 kb on + strand, within ABIE53_001023at 1124.285 kb on + strand, within ABIE53_001023at 1124.285 kb on + strand, within ABIE53_001023at 1124.285 kb on + strand, within ABIE53_001023at 1124.285 kb on + strand, within ABIE53_001023at 1124.607 kb on - strand, within ABIE53_001023at 1124.607 kb on - strand, within ABIE53_001023at 1124.705 kb on - strandat 1124.754 kb on - strandat 1124.919 kb on - strandat 1124.919 kb on - strandat 1124.919 kb on - strandat 1124.919 kb on - strandat 1124.919 kb on - strandat 1125.413 kb on + strand, within ABIE53_001024at 1125.413 kb on + strand, within ABIE53_001024at 1125.414 kb on - strand, within ABIE53_001024at 1125.414 kb on - strand, within ABIE53_001024at 1125.414 kb on - strand, within ABIE53_001024at 1125.414 kb on - strand, within ABIE53_001024at 1125.414 kb on - strand, within ABIE53_001024at 1125.432 kb on + strand, within ABIE53_001024at 1125.432 kb on + strand, within ABIE53_001024at 1125.432 kb on + strand, within ABIE53_001024at 1125.433 kb on - strand, within ABIE53_001024at 1125.433 kb on - strand, within ABIE53_001024at 1125.433 kb on - strand, within ABIE53_001024at 1125.433 kb on - strand, within ABIE53_001024at 1125.475 kb on + strand, within ABIE53_001024at 1125.476 kb on - strand, within ABIE53_001024at 1125.476 kb on - strand, within ABIE53_001024at 1125.492 kb on + strand, within ABIE53_001024at 1125.493 kb on - strand, within ABIE53_001024at 1125.493 kb on - strand, within ABIE53_001024at 1125.552 kb on - strand, within ABIE53_001024at 1125.556 kb on + strand, within ABIE53_001024at 1125.557 kb on - strand, within ABIE53_001024at 1125.557 kb on - strand, within ABIE53_001024at 1125.616 kb on + strand, within ABIE53_001024at 1125.617 kb on - strand, within ABIE53_001024at 1125.687 kb on + strand, within ABIE53_001024at 1125.687 kb on + strand, within ABIE53_001024at 1125.687 kb on + strand, within ABIE53_001024at 1125.687 kb on + strand, within ABIE53_001024at 1125.687 kb on + strand, within ABIE53_001024at 1125.687 kb on + strand, within ABIE53_001024at 1125.687 kb on + strand, within ABIE53_001024at 1125.688 kb on - strand, within ABIE53_001024at 1125.688 kb on - strand, within ABIE53_001024at 1125.688 kb on - strand, within ABIE53_001024at 1125.688 kb on - strand, within ABIE53_001024at 1125.688 kb on - strand, within ABIE53_001024at 1125.688 kb on - strand, within ABIE53_001024at 1125.688 kb on - strand, within ABIE53_001024at 1125.688 kb on - strand, within ABIE53_001024at 1125.688 kb on - strand, within ABIE53_001024at 1125.688 kb on - strand, within ABIE53_001024at 1125.688 kb on - strand, within ABIE53_001024at 1125.688 kb on - strand, within ABIE53_001024at 1125.688 kb on - strand, within ABIE53_001024at 1125.688 kb on - strand, within ABIE53_001024at 1125.688 kb on - strand, within ABIE53_001024at 1125.688 kb on - strand, within ABIE53_001024at 1125.688 kb on - strand, within ABIE53_001024at 1125.709 kb on - strand, within ABIE53_001024at 1125.779 kb on + strand, within ABIE53_001024at 1125.924 kb on + strand, within ABIE53_001024at 1125.924 kb on + strand, within ABIE53_001024at 1125.924 kb on + strand, within ABIE53_001024at 1125.924 kb on + strand, within ABIE53_001024at 1125.925 kb on - strand, within ABIE53_001024at 1125.925 kb on - strand, within ABIE53_001024at 1125.925 kb on - strand, within ABIE53_001024at 1125.925 kb on - strand, within ABIE53_001024at 1125.929 kb on + strand, within ABIE53_001024at 1125.929 kb on + strand, within ABIE53_001024at 1125.929 kb on + strand, within ABIE53_001024at 1125.930 kb on - strand, within ABIE53_001024at 1125.933 kb on + strand, within ABIE53_001024at 1125.933 kb on + strand, within ABIE53_001024at 1125.933 kb on + strand, within ABIE53_001024at 1125.933 kb on + strand, within ABIE53_001024at 1125.934 kb on - strand, within ABIE53_001024at 1125.934 kb on - strand, within ABIE53_001024at 1125.942 kb on - strand, within ABIE53_001024at 1125.942 kb on - strand, within ABIE53_001024at 1126.003 kb on + strand, within ABIE53_001024at 1126.003 kb on + strand, within ABIE53_001024at 1126.004 kb on - strand, within ABIE53_001024at 1126.030 kb on - strand, within ABIE53_001024at 1126.084 kb on + strand, within ABIE53_001024at 1126.085 kb on - strand, within ABIE53_001024at 1126.130 kb on + strandat 1126.131 kb on - strandat 1126.148 kb on - strandat 1126.148 kb on - strandat 1126.185 kb on + strandat 1126.185 kb on + strandat 1126.185 kb on + strandat 1126.185 kb on + strandat 1126.185 kb on + strandat 1126.185 kb on + strandat 1126.186 kb on - strandat 1126.186 kb on - strandat 1126.186 kb on - strandat 1126.186 kb on - strandat 1126.186 kb on - strandat 1126.186 kb on - strandat 1126.186 kb on - strandat 1126.265 kb on + strandat 1126.265 kb on + strandat 1126.266 kb on - strandat 1126.368 kb on - strand, within ABIE53_001025at 1126.383 kb on + strand, within ABIE53_001025at 1126.383 kb on + strand, within ABIE53_001025at 1126.383 kb on + strand, within ABIE53_001025at 1126.383 kb on + strand, within ABIE53_001025at 1126.383 kb on + strand, within ABIE53_001025at 1126.383 kb on + strand, within ABIE53_001025at 1126.383 kb on + strand, within ABIE53_001025at 1126.383 kb on + strand, within ABIE53_001025at 1126.384 kb on - strand, within ABIE53_001025at 1126.384 kb on - strand, within ABIE53_001025at 1126.384 kb on - strand, within ABIE53_001025at 1126.384 kb on - strand, within ABIE53_001025at 1126.384 kb on - strand, within ABIE53_001025at 1126.384 kb on - strand, within ABIE53_001025at 1126.417 kb on + strand, within ABIE53_001025at 1126.418 kb on - strand, within ABIE53_001025at 1126.612 kb on + strand, within ABIE53_001025at 1126.612 kb on + strand, within ABIE53_001025at 1126.612 kb on + strand, within ABIE53_001025at 1126.612 kb on + strand, within ABIE53_001025at 1126.613 kb on - strand, within ABIE53_001025at 1126.628 kb on + strand, within ABIE53_001025at 1126.628 kb on + strand, within ABIE53_001025at 1126.628 kb on + strand, within ABIE53_001025at 1126.628 kb on + strand, within ABIE53_001025at 1126.628 kb on + strand, within ABIE53_001025at 1126.628 kb on + strand, within ABIE53_001025at 1126.628 kb on + strand, within ABIE53_001025at 1126.628 kb on + strand, within ABIE53_001025at 1126.628 kb on + strand, within ABIE53_001025at 1126.629 kb on - strand, within ABIE53_001025at 1126.629 kb on - strand, within ABIE53_001025at 1126.629 kb on - strand, within ABIE53_001025at 1126.646 kb on + strand, within ABIE53_001025at 1126.647 kb on - strand, within ABIE53_001025at 1126.857 kb on - strand, within ABIE53_001025at 1126.857 kb on - strand, within ABIE53_001025at 1126.871 kb on + strand, within ABIE53_001025at 1126.872 kb on - strand, within ABIE53_001025at 1126.872 kb on - strand, within ABIE53_001025at 1126.940 kb on + strand, within ABIE53_001025at 1126.940 kb on + strand, within ABIE53_001025at 1126.941 kb on - strand, within ABIE53_001025at 1126.941 kb on - strand, within ABIE53_001025at 1127.140 kb on + strand, within ABIE53_001025at 1127.140 kb on + strand, within ABIE53_001025at 1127.141 kb on - strand, within ABIE53_001025at 1127.141 kb on - strand, within ABIE53_001025

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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1,124,285 + ABIE53_001023 0.45 +2.4
1,124,285 + ABIE53_001023 0.45 +1.6
1,124,285 + ABIE53_001023 0.45 +0.7
1,124,285 + ABIE53_001023 0.45 -0.3
1,124,285 + ABIE53_001023 0.45 -1.4
1,124,607 - ABIE53_001023 0.89 +0.5
1,124,607 - ABIE53_001023 0.89 -0.5
1,124,705 - +1.0
1,124,754 - +0.2
1,124,919 - +0.9
1,124,919 - +0.7
1,124,919 - +0.4
1,124,919 - -1.9
1,124,919 - -2.7
1,125,413 + ABIE53_001024 0.21 +0.5
1,125,413 + ABIE53_001024 0.21 -0.2
1,125,414 - ABIE53_001024 0.21 +0.0
1,125,414 - ABIE53_001024 0.21 +1.0
1,125,414 - ABIE53_001024 0.21 -2.6
1,125,414 - ABIE53_001024 0.21 +2.0
1,125,414 - ABIE53_001024 0.21 -0.1
1,125,432 + ABIE53_001024 0.23 +0.4
1,125,432 + ABIE53_001024 0.23 +0.0
1,125,432 + ABIE53_001024 0.23 +0.4
1,125,433 - ABIE53_001024 0.23 -0.5
1,125,433 - ABIE53_001024 0.23 -1.9
1,125,433 - ABIE53_001024 0.23 +1.0
1,125,433 - ABIE53_001024 0.23 +2.4
1,125,475 + ABIE53_001024 0.27 +0.7
1,125,476 - ABIE53_001024 0.27 +0.3
1,125,476 - ABIE53_001024 0.27 -0.2
1,125,492 + ABIE53_001024 0.29 -1.3
1,125,493 - ABIE53_001024 0.29 +0.6
1,125,493 - ABIE53_001024 0.29 -0.2
1,125,552 - ABIE53_001024 0.35 -1.8
1,125,556 + ABIE53_001024 0.35 -0.6
1,125,557 - ABIE53_001024 0.35 -0.7
1,125,557 - ABIE53_001024 0.35 -3.7
1,125,616 + ABIE53_001024 0.42 -1.9
1,125,617 - ABIE53_001024 0.42 -1.5
1,125,687 + ABIE53_001024 0.49 -0.3
1,125,687 + ABIE53_001024 0.49 +4.4
1,125,687 + ABIE53_001024 0.49 +1.2
1,125,687 + ABIE53_001024 0.49 -2.0
1,125,687 + ABIE53_001024 0.49 +1.0
1,125,687 + ABIE53_001024 0.49 -2.4
1,125,687 + ABIE53_001024 0.49 -2.2
1,125,688 - ABIE53_001024 0.49 -0.1
1,125,688 - ABIE53_001024 0.49 +1.1
1,125,688 - ABIE53_001024 0.49 -0.5
1,125,688 - ABIE53_001024 0.49 -1.4
1,125,688 - ABIE53_001024 0.49 +0.4
1,125,688 - ABIE53_001024 0.49 -2.1
1,125,688 - ABIE53_001024 0.49 +0.0
1,125,688 - ABIE53_001024 0.49 +5.1
1,125,688 - ABIE53_001024 0.49 +0.4
1,125,688 - ABIE53_001024 0.49 +2.0
1,125,688 - ABIE53_001024 0.49 -0.7
1,125,688 - ABIE53_001024 0.49 -0.7
1,125,688 - ABIE53_001024 0.49 -0.1
1,125,688 - ABIE53_001024 0.49 -1.7
1,125,688 - ABIE53_001024 0.49 -0.3
1,125,688 - ABIE53_001024 0.49 +0.4
1,125,688 - ABIE53_001024 0.49 -2.0
1,125,709 - ABIE53_001024 0.51 -0.7
1,125,779 + ABIE53_001024 0.58 -0.2
1,125,924 + ABIE53_001024 0.73 -0.6
1,125,924 + ABIE53_001024 0.73 +1.0
1,125,924 + ABIE53_001024 0.73 +0.4
1,125,924 + ABIE53_001024 0.73 +0.4
1,125,925 - ABIE53_001024 0.73 -0.2
1,125,925 - ABIE53_001024 0.73 +0.0
1,125,925 - ABIE53_001024 0.73 +2.0
1,125,925 - ABIE53_001024 0.73 +0.2
1,125,929 + ABIE53_001024 0.74 +0.1
1,125,929 + ABIE53_001024 0.74 +0.4
1,125,929 + ABIE53_001024 0.74 +0.2
1,125,930 - ABIE53_001024 0.74 -1.4
1,125,933 + ABIE53_001024 0.74 -0.7
1,125,933 + ABIE53_001024 0.74 -0.6
1,125,933 + ABIE53_001024 0.74 +0.7
1,125,933 + ABIE53_001024 0.74 -1.3
1,125,934 - ABIE53_001024 0.74 -1.9
1,125,934 - ABIE53_001024 0.74 -0.9
1,125,942 - ABIE53_001024 0.75 +2.3
1,125,942 - ABIE53_001024 0.75 +0.4
1,126,003 + ABIE53_001024 0.81 +2.6
1,126,003 + ABIE53_001024 0.81 -1.4
1,126,004 - ABIE53_001024 0.81 -2.0
1,126,030 - ABIE53_001024 0.84 +1.4
1,126,084 + ABIE53_001024 0.90 +0.1
1,126,085 - ABIE53_001024 0.90 +0.0
1,126,130 + -0.9
1,126,131 - +0.2
1,126,148 - -2.3
1,126,148 - +0.4
1,126,185 + -0.1
1,126,185 + -1.1
1,126,185 + -2.7
1,126,185 + +0.4
1,126,185 + -0.3
1,126,185 + +1.0
1,126,186 - +1.2
1,126,186 - +0.7
1,126,186 - -0.9
1,126,186 - +0.7
1,126,186 - -1.4
1,126,186 - -0.2
1,126,186 - +0.0
1,126,265 + +0.1
1,126,265 + -1.0
1,126,266 - +1.2
1,126,368 - ABIE53_001025 0.14 +4.0
1,126,383 + ABIE53_001025 0.15 -0.5
1,126,383 + ABIE53_001025 0.15 +3.3
1,126,383 + ABIE53_001025 0.15 -1.3
1,126,383 + ABIE53_001025 0.15 +2.0
1,126,383 + ABIE53_001025 0.15 +0.1
1,126,383 + ABIE53_001025 0.15 +0.1
1,126,383 + ABIE53_001025 0.15 -0.3
1,126,383 + ABIE53_001025 0.15 -2.8
1,126,384 - ABIE53_001025 0.15 -0.8
1,126,384 - ABIE53_001025 0.15 -0.9
1,126,384 - ABIE53_001025 0.15 -2.6
1,126,384 - ABIE53_001025 0.15 +1.0
1,126,384 - ABIE53_001025 0.15 -1.9
1,126,384 - ABIE53_001025 0.15 -0.4
1,126,417 + ABIE53_001025 0.17 -1.0
1,126,418 - ABIE53_001025 0.17 +1.0
1,126,612 + ABIE53_001025 0.31 -0.3
1,126,612 + ABIE53_001025 0.31 +0.8
1,126,612 + ABIE53_001025 0.31 -0.1
1,126,612 + ABIE53_001025 0.31 -1.1
1,126,613 - ABIE53_001025 0.31 -1.3
1,126,628 + ABIE53_001025 0.33 -0.2
1,126,628 + ABIE53_001025 0.33 +0.7
1,126,628 + ABIE53_001025 0.33 +0.2
1,126,628 + ABIE53_001025 0.33 +1.2
1,126,628 + ABIE53_001025 0.33 -0.5
1,126,628 + ABIE53_001025 0.33 -0.3
1,126,628 + ABIE53_001025 0.33 -1.2
1,126,628 + ABIE53_001025 0.33 +1.3
1,126,628 + ABIE53_001025 0.33 -0.7
1,126,629 - ABIE53_001025 0.33 +1.4
1,126,629 - ABIE53_001025 0.33 -1.7
1,126,629 - ABIE53_001025 0.33 +1.1
1,126,646 + ABIE53_001025 0.34 +0.4
1,126,647 - ABIE53_001025 0.34 -0.1
1,126,857 - ABIE53_001025 0.49 -1.4
1,126,857 - ABIE53_001025 0.49 +0.7
1,126,871 + ABIE53_001025 0.50 -1.0
1,126,872 - ABIE53_001025 0.50 +1.5
1,126,872 - ABIE53_001025 0.50 +0.7
1,126,940 + ABIE53_001025 0.55 -1.0
1,126,940 + ABIE53_001025 0.55 +0.2
1,126,941 - ABIE53_001025 0.55 +0.3
1,126,941 - ABIE53_001025 0.55 -0.8
1,127,140 + ABIE53_001025 0.70 +0.7
1,127,140 + ABIE53_001025 0.70 +0.4
1,127,141 - ABIE53_001025 0.70 +1.0
1,127,141 - ABIE53_001025 0.70 -0.9

Or see this region's nucleotide sequence