Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000499 and ABIE53_000500 are separated by 175 nucleotides ABIE53_000500 and ABIE53_000501 are separated by 24 nucleotides
ABIE53_000499: ABIE53_000499 - NAD-dependent SIR2 family protein deacetylase, at 537,555 to 538,091
_000499
ABIE53_000500: ABIE53_000500 - putative DNA-binding transcriptional regulator YafY, at 538,267 to 539,286
_000500
ABIE53_000501: ABIE53_000501 - hypothetical protein, at 539,311 to 540,945
_000501
Position (kb) 538
539
540 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 537.272 kb on - strand at 537.399 kb on + strand at 537.399 kb on + strand at 537.400 kb on - strand at 537.639 kb on + strand, within ABIE53_000499 at 537.881 kb on + strand, within ABIE53_000499 at 537.881 kb on + strand, within ABIE53_000499 at 537.881 kb on + strand, within ABIE53_000499 at 537.881 kb on + strand, within ABIE53_000499 at 537.881 kb on + strand, within ABIE53_000499 at 537.882 kb on - strand, within ABIE53_000499 at 537.882 kb on - strand, within ABIE53_000499 at 537.882 kb on - strand, within ABIE53_000499 at 537.882 kb on - strand, within ABIE53_000499 at 537.882 kb on - strand, within ABIE53_000499 at 537.882 kb on - strand, within ABIE53_000499 at 537.882 kb on - strand, within ABIE53_000499 at 537.882 kb on - strand, within ABIE53_000499 at 538.164 kb on + strand at 538.164 kb on + strand at 538.165 kb on - strand at 538.165 kb on - strand at 538.165 kb on - strand at 538.165 kb on - strand at 538.188 kb on + strand at 538.188 kb on + strand at 538.188 kb on + strand at 538.188 kb on + strand at 538.188 kb on + strand at 538.189 kb on - strand at 538.189 kb on - strand at 538.189 kb on - strand at 538.189 kb on - strand at 538.189 kb on - strand at 538.189 kb on - strand at 538.189 kb on - strand at 538.189 kb on - strand at 538.189 kb on - strand at 538.189 kb on - strand at 538.190 kb on + strand at 538.190 kb on + strand at 538.190 kb on + strand at 538.190 kb on + strand at 538.190 kb on + strand at 538.191 kb on - strand at 538.191 kb on - strand at 538.191 kb on - strand at 538.191 kb on - strand at 538.191 kb on - strand at 538.191 kb on - strand at 538.191 kb on - strand at 538.191 kb on - strand at 538.194 kb on + strand at 538.194 kb on + strand at 538.195 kb on - strand at 538.195 kb on - strand at 538.195 kb on - strand at 538.195 kb on - strand at 538.195 kb on - strand at 538.228 kb on + strand at 538.229 kb on - strand at 538.229 kb on - strand at 538.230 kb on + strand at 538.230 kb on + strand at 538.230 kb on + strand at 538.231 kb on - strand at 538.231 kb on - strand at 538.231 kb on - strand at 538.241 kb on - strand at 538.327 kb on + strand at 538.327 kb on + strand at 538.328 kb on - strand at 538.328 kb on - strand at 538.365 kb on + strand at 538.365 kb on + strand at 538.365 kb on + strand at 538.366 kb on - strand at 538.366 kb on - strand at 538.397 kb on + strand, within ABIE53_000500 at 538.397 kb on + strand, within ABIE53_000500 at 538.397 kb on + strand, within ABIE53_000500 at 538.397 kb on + strand, within ABIE53_000500 at 538.398 kb on - strand, within ABIE53_000500 at 538.398 kb on - strand, within ABIE53_000500 at 538.398 kb on - strand, within ABIE53_000500 at 538.398 kb on - strand, within ABIE53_000500 at 538.398 kb on - strand, within ABIE53_000500 at 538.399 kb on + strand, within ABIE53_000500 at 538.399 kb on + strand, within ABIE53_000500 at 538.399 kb on + strand, within ABIE53_000500 at 538.400 kb on - strand, within ABIE53_000500 at 538.400 kb on - strand, within ABIE53_000500 at 538.467 kb on - strand, within ABIE53_000500 at 538.467 kb on - strand, within ABIE53_000500 at 538.467 kb on - strand, within ABIE53_000500 at 538.503 kb on + strand, within ABIE53_000500 at 538.666 kb on + strand, within ABIE53_000500 at 538.666 kb on + strand, within ABIE53_000500 at 538.666 kb on + strand, within ABIE53_000500 at 538.721 kb on - strand, within ABIE53_000500 at 538.750 kb on - strand, within ABIE53_000500 at 538.750 kb on - strand, within ABIE53_000500 at 538.795 kb on + strand, within ABIE53_000500 at 538.796 kb on - strand, within ABIE53_000500 at 538.838 kb on + strand, within ABIE53_000500 at 538.838 kb on + strand, within ABIE53_000500 at 538.838 kb on + strand, within ABIE53_000500 at 538.839 kb on - strand, within ABIE53_000500 at 538.839 kb on - strand, within ABIE53_000500 at 538.839 kb on - strand, within ABIE53_000500 at 538.839 kb on - strand, within ABIE53_000500 at 538.839 kb on - strand, within ABIE53_000500 at 538.876 kb on + strand, within ABIE53_000500 at 538.876 kb on + strand, within ABIE53_000500 at 538.876 kb on + strand, within ABIE53_000500 at 538.876 kb on + strand, within ABIE53_000500 at 538.877 kb on - strand, within ABIE53_000500 at 538.877 kb on - strand, within ABIE53_000500 at 538.877 kb on - strand, within ABIE53_000500 at 538.918 kb on + strand, within ABIE53_000500 at 538.918 kb on + strand, within ABIE53_000500 at 538.918 kb on + strand, within ABIE53_000500 at 538.919 kb on - strand, within ABIE53_000500 at 538.919 kb on - strand, within ABIE53_000500 at 538.996 kb on + strand, within ABIE53_000500 at 538.996 kb on + strand, within ABIE53_000500 at 538.996 kb on + strand, within ABIE53_000500 at 538.996 kb on + strand, within ABIE53_000500 at 538.996 kb on + strand, within ABIE53_000500 at 538.997 kb on - strand, within ABIE53_000500 at 538.997 kb on - strand, within ABIE53_000500 at 538.997 kb on - strand, within ABIE53_000500 at 538.997 kb on - strand, within ABIE53_000500 at 538.997 kb on - strand, within ABIE53_000500 at 538.997 kb on - strand, within ABIE53_000500 at 538.997 kb on - strand, within ABIE53_000500 at 539.203 kb on + strand at 539.204 kb on - strand at 539.204 kb on - strand at 539.204 kb on - strand at 539.213 kb on + strand at 539.213 kb on + strand at 539.214 kb on - strand at 539.214 kb on - strand at 539.284 kb on + strand at 539.284 kb on + strand at 539.321 kb on + strand at 539.321 kb on + strand at 539.321 kb on + strand at 539.322 kb on - strand at 539.322 kb on - strand at 539.352 kb on - strand at 539.416 kb on + strand at 539.416 kb on + strand at 539.416 kb on + strand at 539.416 kb on + strand at 539.416 kb on + strand at 539.416 kb on + strand at 539.416 kb on + strand at 539.416 kb on + strand at 539.416 kb on + strand at 539.416 kb on + strand at 539.417 kb on - strand at 539.417 kb on - strand at 539.417 kb on - strand at 539.417 kb on - strand at 539.417 kb on - strand at 539.417 kb on - strand at 539.417 kb on - strand at 539.417 kb on - strand at 539.425 kb on + strand at 539.426 kb on - strand at 539.569 kb on - strand, within ABIE53_000501 at 539.575 kb on + strand, within ABIE53_000501 at 539.575 kb on + strand, within ABIE53_000501 at 539.575 kb on + strand, within ABIE53_000501 at 539.575 kb on + strand, within ABIE53_000501 at 539.576 kb on - strand, within ABIE53_000501 at 539.576 kb on - strand, within ABIE53_000501 at 539.576 kb on - strand, within ABIE53_000501 at 539.576 kb on - strand, within ABIE53_000501 at 539.576 kb on - strand, within ABIE53_000501 at 539.576 kb on - strand, within ABIE53_000501 at 539.668 kb on + strand, within ABIE53_000501 at 539.689 kb on + strand, within ABIE53_000501 at 539.701 kb on + strand, within ABIE53_000501 at 539.702 kb on - strand, within ABIE53_000501 at 539.702 kb on - strand, within ABIE53_000501 at 539.702 kb on - strand, within ABIE53_000501 at 539.713 kb on + strand, within ABIE53_000501 at 539.713 kb on + strand, within ABIE53_000501 at 539.713 kb on + strand, within ABIE53_000501 at 539.714 kb on - strand, within ABIE53_000501 at 540.064 kb on + strand, within ABIE53_000501 at 540.064 kb on + strand, within ABIE53_000501 at 540.065 kb on - strand, within ABIE53_000501 at 540.065 kb on - strand, within ABIE53_000501 at 540.065 kb on - strand, within ABIE53_000501 at 540.128 kb on + strand, within ABIE53_000501 at 540.128 kb on + strand, within ABIE53_000501 at 540.136 kb on + strand, within ABIE53_000501 at 540.136 kb on + strand, within ABIE53_000501 at 540.136 kb on + strand, within ABIE53_000501 at 540.136 kb on + strand, within ABIE53_000501 at 540.136 kb on + strand, within ABIE53_000501 at 540.136 kb on + strand, within ABIE53_000501 at 540.136 kb on + strand, within ABIE53_000501 at 540.137 kb on - strand, within ABIE53_000501 at 540.137 kb on - strand, within ABIE53_000501 at 540.137 kb on - strand, within ABIE53_000501 at 540.137 kb on - strand, within ABIE53_000501 at 540.137 kb on - strand, within ABIE53_000501
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 537,272 - +0.3 537,399 + +2.5 537,399 + -0.6 537,400 - -1.4 537,639 + ABIE53_000499 0.16 -0.9 537,881 + ABIE53_000499 0.61 +0.3 537,881 + ABIE53_000499 0.61 -1.1 537,881 + ABIE53_000499 0.61 -1.1 537,881 + ABIE53_000499 0.61 -0.5 537,881 + ABIE53_000499 0.61 -0.2 537,882 - ABIE53_000499 0.61 -1.9 537,882 - ABIE53_000499 0.61 +0.4 537,882 - ABIE53_000499 0.61 -1.0 537,882 - ABIE53_000499 0.61 -1.0 537,882 - ABIE53_000499 0.61 +1.3 537,882 - ABIE53_000499 0.61 -1.4 537,882 - ABIE53_000499 0.61 -0.8 537,882 - ABIE53_000499 0.61 -2.5 538,164 + +0.5 538,164 + -0.1 538,165 - -0.7 538,165 - +1.3 538,165 - +0.0 538,165 - -2.2 538,188 + -0.2 538,188 + +0.8 538,188 + -1.1 538,188 + +0.8 538,188 + +0.4 538,189 - +0.6 538,189 - +4.0 538,189 - -1.2 538,189 - -0.2 538,189 - -1.4 538,189 - +1.3 538,189 - +2.9 538,189 - +2.3 538,189 - +2.1 538,189 - -2.7 538,190 + +0.7 538,190 + -0.7 538,190 + -0.8 538,190 + +1.5 538,190 + -0.8 538,191 - -1.6 538,191 - -0.5 538,191 - +0.8 538,191 - -0.5 538,191 - +1.3 538,191 - +0.7 538,191 - +1.2 538,191 - -0.4 538,194 + +0.8 538,194 + +0.3 538,195 - -1.1 538,195 - -0.9 538,195 - -1.2 538,195 - +0.5 538,195 - -1.0 538,228 + +0.9 538,229 - -1.0 538,229 - -1.1 538,230 + -0.5 538,230 + -0.8 538,230 + -1.4 538,231 - -1.5 538,231 - -0.5 538,231 - +2.3 538,241 - -1.7 538,327 + -1.7 538,327 + +1.6 538,328 - +0.3 538,328 - -1.5 538,365 + +0.6 538,365 + -1.4 538,365 + -2.1 538,366 - -1.8 538,366 - +0.3 538,397 + ABIE53_000500 0.13 +1.9 538,397 + ABIE53_000500 0.13 -0.2 538,397 + ABIE53_000500 0.13 +0.0 538,397 + ABIE53_000500 0.13 -0.7 538,398 - ABIE53_000500 0.13 -1.6 538,398 - ABIE53_000500 0.13 +2.1 538,398 - ABIE53_000500 0.13 +0.5 538,398 - ABIE53_000500 0.13 +0.7 538,398 - ABIE53_000500 0.13 +0.8 538,399 + ABIE53_000500 0.13 -1.7 538,399 + ABIE53_000500 0.13 +1.5 538,399 + ABIE53_000500 0.13 -1.7 538,400 - ABIE53_000500 0.13 +0.3 538,400 - ABIE53_000500 0.13 +1.3 538,467 - ABIE53_000500 0.20 +1.8 538,467 - ABIE53_000500 0.20 +1.1 538,467 - ABIE53_000500 0.20 +0.6 538,503 + ABIE53_000500 0.23 -2.1 538,666 + ABIE53_000500 0.39 -1.5 538,666 + ABIE53_000500 0.39 +0.8 538,666 + ABIE53_000500 0.39 -0.5 538,721 - ABIE53_000500 0.45 +0.8 538,750 - ABIE53_000500 0.47 -1.4 538,750 - ABIE53_000500 0.47 +0.3 538,795 + ABIE53_000500 0.52 -1.0 538,796 - ABIE53_000500 0.52 -0.2 538,838 + ABIE53_000500 0.56 -0.7 538,838 + ABIE53_000500 0.56 +1.0 538,838 + ABIE53_000500 0.56 -1.1 538,839 - ABIE53_000500 0.56 -0.8 538,839 - ABIE53_000500 0.56 +1.5 538,839 - ABIE53_000500 0.56 -0.4 538,839 - ABIE53_000500 0.56 -0.6 538,839 - ABIE53_000500 0.56 -0.6 538,876 + ABIE53_000500 0.60 +0.3 538,876 + ABIE53_000500 0.60 +2.3 538,876 + ABIE53_000500 0.60 -0.7 538,876 + ABIE53_000500 0.60 +3.2 538,877 - ABIE53_000500 0.60 +0.8 538,877 - ABIE53_000500 0.60 -2.4 538,877 - ABIE53_000500 0.60 +2.0 538,918 + ABIE53_000500 0.64 -0.9 538,918 + ABIE53_000500 0.64 -0.2 538,918 + ABIE53_000500 0.64 +1.2 538,919 - ABIE53_000500 0.64 +0.0 538,919 - ABIE53_000500 0.64 +2.3 538,996 + ABIE53_000500 0.71 -0.1 538,996 + ABIE53_000500 0.71 +0.3 538,996 + ABIE53_000500 0.71 -1.7 538,996 + ABIE53_000500 0.71 -0.8 538,996 + ABIE53_000500 0.71 -1.5 538,997 - ABIE53_000500 0.72 -1.3 538,997 - ABIE53_000500 0.72 +0.2 538,997 - ABIE53_000500 0.72 -1.8 538,997 - ABIE53_000500 0.72 -1.0 538,997 - ABIE53_000500 0.72 -0.2 538,997 - ABIE53_000500 0.72 -1.8 538,997 - ABIE53_000500 0.72 -1.9 539,203 + -1.7 539,204 - -0.7 539,204 - -0.2 539,204 - -1.4 539,213 + -1.6 539,213 + +0.8 539,214 - -0.7 539,214 - -2.0 539,284 + +2.8 539,284 + -0.8 539,321 + +0.3 539,321 + -1.4 539,321 + +2.3 539,322 - -2.1 539,322 - -1.4 539,352 - -0.6 539,416 + +0.6 539,416 + -0.8 539,416 + -0.1 539,416 + -0.2 539,416 + -0.8 539,416 + +0.0 539,416 + -0.8 539,416 + -0.3 539,416 + +0.5 539,416 + +0.3 539,417 - -0.8 539,417 - +1.1 539,417 - +1.0 539,417 - +0.8 539,417 - -1.3 539,417 - +2.2 539,417 - -2.2 539,417 - -2.1 539,425 + +1.5 539,426 - +0.6 539,569 - ABIE53_000501 0.16 +0.0 539,575 + ABIE53_000501 0.16 +0.6 539,575 + ABIE53_000501 0.16 -0.2 539,575 + ABIE53_000501 0.16 -0.2 539,575 + ABIE53_000501 0.16 +0.3 539,576 - ABIE53_000501 0.16 +2.3 539,576 - ABIE53_000501 0.16 +0.0 539,576 - ABIE53_000501 0.16 -1.4 539,576 - ABIE53_000501 0.16 +0.0 539,576 - ABIE53_000501 0.16 +2.3 539,576 - ABIE53_000501 0.16 -1.2 539,668 + ABIE53_000501 0.22 +0.3 539,689 + ABIE53_000501 0.23 -1.4 539,701 + ABIE53_000501 0.24 -0.2 539,702 - ABIE53_000501 0.24 +0.6 539,702 - ABIE53_000501 0.24 -1.1 539,702 - ABIE53_000501 0.24 -0.2 539,713 + ABIE53_000501 0.25 +1.0 539,713 + ABIE53_000501 0.25 +0.3 539,713 + ABIE53_000501 0.25 -0.4 539,714 - ABIE53_000501 0.25 +0.7 540,064 + ABIE53_000501 0.46 -0.8 540,064 + ABIE53_000501 0.46 +1.3 540,065 - ABIE53_000501 0.46 -1.7 540,065 - ABIE53_000501 0.46 -0.3 540,065 - ABIE53_000501 0.46 +2.2 540,128 + ABIE53_000501 0.50 +0.4 540,128 + ABIE53_000501 0.50 +0.3 540,136 + ABIE53_000501 0.50 -1.7 540,136 + ABIE53_000501 0.50 +1.0 540,136 + ABIE53_000501 0.50 +0.0 540,136 + ABIE53_000501 0.50 -1.0 540,136 + ABIE53_000501 0.50 -3.0 540,136 + ABIE53_000501 0.50 +1.8 540,136 + ABIE53_000501 0.50 +0.5 540,137 - ABIE53_000501 0.51 +1.9 540,137 - ABIE53_000501 0.51 -2.9 540,137 - ABIE53_000501 0.51 -0.7 540,137 - ABIE53_000501 0.51 -1.6 540,137 - ABIE53_000501 0.51 +1.3
Or see this region's nucleotide sequence