Experiment: KB with Strychnine Sulfate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3606 and Psyr_3607 are separated by 138 nucleotides Psyr_3607 and Psyr_3608 are separated by 184 nucleotides
Psyr_3606: Psyr_3606 - ABC transporter, substrate-binding protein, aliphatic sulfonate, at 4,289,388 to 4,290,359
_3606
Psyr_3607: Psyr_3607 - transcriptional regulator, LysR family, at 4,290,498 to 4,291,406
_3607
Psyr_3608: Psyr_3608 - Pirin, N-terminal, at 4,291,591 to 4,292,313
_3608
Position (kb) 4290
4291
4292 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4289.806 kb on + strand, within Psyr_3606 at 4289.806 kb on + strand, within Psyr_3606 at 4289.807 kb on - strand, within Psyr_3606 at 4289.820 kb on - strand, within Psyr_3606 at 4290.126 kb on - strand, within Psyr_3606 at 4290.196 kb on + strand, within Psyr_3606 at 4290.196 kb on + strand, within Psyr_3606 at 4290.197 kb on - strand, within Psyr_3606 at 4290.197 kb on - strand, within Psyr_3606 at 4290.201 kb on + strand, within Psyr_3606 at 4290.202 kb on - strand, within Psyr_3606 at 4290.202 kb on - strand, within Psyr_3606 at 4290.202 kb on - strand, within Psyr_3606 at 4290.202 kb on - strand, within Psyr_3606 at 4290.248 kb on - strand, within Psyr_3606 at 4290.363 kb on + strand at 4290.363 kb on + strand at 4290.364 kb on - strand at 4290.364 kb on - strand at 4290.364 kb on - strand at 4290.364 kb on - strand at 4290.364 kb on - strand at 4290.364 kb on - strand at 4290.364 kb on - strand at 4290.364 kb on - strand at 4290.364 kb on - strand at 4290.697 kb on + strand, within Psyr_3607 at 4290.697 kb on + strand, within Psyr_3607 at 4290.698 kb on - strand, within Psyr_3607 at 4290.698 kb on - strand, within Psyr_3607 at 4290.698 kb on - strand, within Psyr_3607 at 4290.698 kb on - strand, within Psyr_3607 at 4290.747 kb on - strand, within Psyr_3607 at 4290.759 kb on - strand, within Psyr_3607 at 4290.896 kb on - strand, within Psyr_3607 at 4290.913 kb on + strand, within Psyr_3607 at 4290.913 kb on + strand, within Psyr_3607 at 4290.914 kb on - strand, within Psyr_3607 at 4290.914 kb on - strand, within Psyr_3607 at 4290.991 kb on + strand, within Psyr_3607 at 4290.991 kb on + strand, within Psyr_3607 at 4291.044 kb on + strand, within Psyr_3607 at 4291.045 kb on - strand, within Psyr_3607 at 4291.211 kb on - strand, within Psyr_3607 at 4291.211 kb on - strand, within Psyr_3607 at 4291.213 kb on + strand, within Psyr_3607 at 4291.214 kb on - strand, within Psyr_3607 at 4291.214 kb on - strand, within Psyr_3607 at 4291.214 kb on - strand, within Psyr_3607 at 4291.214 kb on - strand, within Psyr_3607 at 4291.368 kb on + strand at 4291.369 kb on - strand at 4291.508 kb on + strand at 4291.508 kb on + strand at 4291.508 kb on + strand at 4291.509 kb on - strand at 4291.542 kb on + strand at 4291.543 kb on - strand at 4291.574 kb on + strand at 4291.575 kb on - strand at 4291.789 kb on + strand, within Psyr_3608 at 4291.789 kb on + strand, within Psyr_3608 at 4291.790 kb on - strand, within Psyr_3608 at 4291.790 kb on - strand, within Psyr_3608 at 4291.790 kb on - strand, within Psyr_3608 at 4291.790 kb on - strand, within Psyr_3608 at 4291.978 kb on + strand, within Psyr_3608 at 4291.978 kb on + strand, within Psyr_3608 at 4291.978 kb on + strand, within Psyr_3608 at 4291.995 kb on + strand, within Psyr_3608 at 4292.086 kb on + strand, within Psyr_3608 at 4292.086 kb on + strand, within Psyr_3608 at 4292.086 kb on + strand, within Psyr_3608 at 4292.087 kb on - strand, within Psyr_3608 at 4292.087 kb on - strand, within Psyr_3608 at 4292.087 kb on - strand, within Psyr_3608 at 4292.149 kb on + strand, within Psyr_3608 at 4292.354 kb on + strand at 4292.354 kb on + strand at 4292.354 kb on + strand at 4292.354 kb on + strand at 4292.354 kb on + strand at 4292.354 kb on + strand at 4292.354 kb on + strand at 4292.355 kb on - strand at 4292.355 kb on - strand at 4292.355 kb on - strand at 4292.355 kb on - strand at 4292.355 kb on - strand at 4292.355 kb on - strand at 4292.355 kb on - strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.357 kb on - strand at 4292.357 kb on - strand at 4292.357 kb on - strand at 4292.358 kb on + strand at 4292.358 kb on + strand at 4292.358 kb on + strand at 4292.358 kb on + strand at 4292.358 kb on + strand at 4292.358 kb on + strand at 4292.359 kb on - strand at 4292.359 kb on - strand at 4292.359 kb on - strand at 4292.359 kb on - strand at 4292.359 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Strychnine Sulfate 10 mM remove 4,289,806 + Psyr_3606 0.43 +1.3 4,289,806 + Psyr_3606 0.43 +0.4 4,289,807 - Psyr_3606 0.43 -0.5 4,289,820 - Psyr_3606 0.44 -0.0 4,290,126 - Psyr_3606 0.76 +1.2 4,290,196 + Psyr_3606 0.83 +0.8 4,290,196 + Psyr_3606 0.83 +0.5 4,290,197 - Psyr_3606 0.83 -0.8 4,290,197 - Psyr_3606 0.83 +0.3 4,290,201 + Psyr_3606 0.84 +1.0 4,290,202 - Psyr_3606 0.84 -0.5 4,290,202 - Psyr_3606 0.84 +1.4 4,290,202 - Psyr_3606 0.84 -0.1 4,290,202 - Psyr_3606 0.84 +0.8 4,290,248 - Psyr_3606 0.88 +0.5 4,290,363 + +0.1 4,290,363 + +0.3 4,290,364 - -0.6 4,290,364 - -0.9 4,290,364 - +0.6 4,290,364 - +0.0 4,290,364 - +0.9 4,290,364 - +0.2 4,290,364 - +0.7 4,290,364 - -0.6 4,290,364 - -0.9 4,290,697 + Psyr_3607 0.22 -0.0 4,290,697 + Psyr_3607 0.22 +0.0 4,290,698 - Psyr_3607 0.22 -0.3 4,290,698 - Psyr_3607 0.22 -1.0 4,290,698 - Psyr_3607 0.22 +1.2 4,290,698 - Psyr_3607 0.22 -0.2 4,290,747 - Psyr_3607 0.27 +0.4 4,290,759 - Psyr_3607 0.29 -0.6 4,290,896 - Psyr_3607 0.44 -0.4 4,290,913 + Psyr_3607 0.46 +0.6 4,290,913 + Psyr_3607 0.46 +0.3 4,290,914 - Psyr_3607 0.46 +1.3 4,290,914 - Psyr_3607 0.46 +0.6 4,290,991 + Psyr_3607 0.54 -0.9 4,290,991 + Psyr_3607 0.54 -1.1 4,291,044 + Psyr_3607 0.60 +0.9 4,291,045 - Psyr_3607 0.60 +1.7 4,291,211 - Psyr_3607 0.78 -0.7 4,291,211 - Psyr_3607 0.78 -0.1 4,291,213 + Psyr_3607 0.79 +0.6 4,291,214 - Psyr_3607 0.79 +0.3 4,291,214 - Psyr_3607 0.79 -0.4 4,291,214 - Psyr_3607 0.79 -1.1 4,291,214 - Psyr_3607 0.79 +0.0 4,291,368 + -0.8 4,291,369 - +1.3 4,291,508 + +0.2 4,291,508 + -0.0 4,291,508 + +0.2 4,291,509 - -1.3 4,291,542 + -0.7 4,291,543 - +0.4 4,291,574 + -1.0 4,291,575 - +0.2 4,291,789 + Psyr_3608 0.27 -1.8 4,291,789 + Psyr_3608 0.27 +1.6 4,291,790 - Psyr_3608 0.28 -0.2 4,291,790 - Psyr_3608 0.28 +0.3 4,291,790 - Psyr_3608 0.28 +1.2 4,291,790 - Psyr_3608 0.28 +1.0 4,291,978 + Psyr_3608 0.54 -1.1 4,291,978 + Psyr_3608 0.54 +0.4 4,291,978 + Psyr_3608 0.54 -0.3 4,291,995 + Psyr_3608 0.56 +1.0 4,292,086 + Psyr_3608 0.68 +0.9 4,292,086 + Psyr_3608 0.68 -1.8 4,292,086 + Psyr_3608 0.68 -0.6 4,292,087 - Psyr_3608 0.69 -1.6 4,292,087 - Psyr_3608 0.69 +1.2 4,292,087 - Psyr_3608 0.69 +2.0 4,292,149 + Psyr_3608 0.77 +0.2 4,292,354 + +0.8 4,292,354 + -0.3 4,292,354 + +0.9 4,292,354 + +0.2 4,292,354 + +0.2 4,292,354 + +1.3 4,292,354 + +0.4 4,292,355 - +1.3 4,292,355 - +1.0 4,292,355 - +0.7 4,292,355 - -0.5 4,292,355 - +0.3 4,292,355 - +1.4 4,292,355 - +0.4 4,292,356 + -1.0 4,292,356 + -1.9 4,292,356 + -0.5 4,292,356 + +0.5 4,292,356 + -0.9 4,292,356 + -0.1 4,292,356 + +0.9 4,292,356 + +1.0 4,292,356 + -0.7 4,292,356 + +0.1 4,292,356 + -0.1 4,292,357 - +0.3 4,292,357 - -1.1 4,292,357 - -1.0 4,292,358 + +1.6 4,292,358 + +0.9 4,292,358 + -0.1 4,292,358 + +0.1 4,292,358 + +0.4 4,292,358 + -0.2 4,292,359 - -0.6 4,292,359 - -0.2 4,292,359 - +0.7 4,292,359 - -0.7 4,292,359 - -0.2
Or see this region's nucleotide sequence