Experiment: KB with Strychnine Sulfate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3605 and Psyr_3606 are separated by 38 nucleotides Psyr_3606 and Psyr_3607 are separated by 138 nucleotides
Psyr_3605: Psyr_3605 - Trimethylamine-N-oxide reductase (cytochrome c), at 4,287,079 to 4,289,349
_3605
Psyr_3606: Psyr_3606 - ABC transporter, substrate-binding protein, aliphatic sulfonate, at 4,289,388 to 4,290,359
_3606
Psyr_3607: Psyr_3607 - transcriptional regulator, LysR family, at 4,290,498 to 4,291,406
_3607
Position (kb) 4289
4290
4291 Strain fitness (log2 ratio) -1
0
1 at 4288.401 kb on - strand, within Psyr_3605 at 4288.533 kb on - strand, within Psyr_3605 at 4288.550 kb on + strand, within Psyr_3605 at 4288.561 kb on - strand, within Psyr_3605 at 4288.636 kb on - strand, within Psyr_3605 at 4288.669 kb on - strand, within Psyr_3605 at 4288.863 kb on + strand, within Psyr_3605 at 4288.863 kb on + strand, within Psyr_3605 at 4288.863 kb on + strand, within Psyr_3605 at 4288.864 kb on - strand, within Psyr_3605 at 4288.864 kb on - strand, within Psyr_3605 at 4288.934 kb on + strand, within Psyr_3605 at 4288.934 kb on + strand, within Psyr_3605 at 4288.935 kb on - strand, within Psyr_3605 at 4288.955 kb on + strand, within Psyr_3605 at 4288.972 kb on - strand, within Psyr_3605 at 4289.046 kb on + strand, within Psyr_3605 at 4289.221 kb on - strand at 4289.221 kb on - strand at 4289.394 kb on + strand at 4289.394 kb on + strand at 4289.806 kb on + strand, within Psyr_3606 at 4289.806 kb on + strand, within Psyr_3606 at 4289.807 kb on - strand, within Psyr_3606 at 4289.820 kb on - strand, within Psyr_3606 at 4290.126 kb on - strand, within Psyr_3606 at 4290.196 kb on + strand, within Psyr_3606 at 4290.196 kb on + strand, within Psyr_3606 at 4290.197 kb on - strand, within Psyr_3606 at 4290.197 kb on - strand, within Psyr_3606 at 4290.201 kb on + strand, within Psyr_3606 at 4290.202 kb on - strand, within Psyr_3606 at 4290.202 kb on - strand, within Psyr_3606 at 4290.202 kb on - strand, within Psyr_3606 at 4290.202 kb on - strand, within Psyr_3606 at 4290.248 kb on - strand, within Psyr_3606 at 4290.363 kb on + strand at 4290.363 kb on + strand at 4290.364 kb on - strand at 4290.364 kb on - strand at 4290.364 kb on - strand at 4290.364 kb on - strand at 4290.364 kb on - strand at 4290.364 kb on - strand at 4290.364 kb on - strand at 4290.364 kb on - strand at 4290.364 kb on - strand at 4290.697 kb on + strand, within Psyr_3607 at 4290.697 kb on + strand, within Psyr_3607 at 4290.698 kb on - strand, within Psyr_3607 at 4290.698 kb on - strand, within Psyr_3607 at 4290.698 kb on - strand, within Psyr_3607 at 4290.698 kb on - strand, within Psyr_3607 at 4290.747 kb on - strand, within Psyr_3607 at 4290.759 kb on - strand, within Psyr_3607 at 4290.896 kb on - strand, within Psyr_3607 at 4290.913 kb on + strand, within Psyr_3607 at 4290.913 kb on + strand, within Psyr_3607 at 4290.914 kb on - strand, within Psyr_3607 at 4290.914 kb on - strand, within Psyr_3607 at 4290.991 kb on + strand, within Psyr_3607 at 4290.991 kb on + strand, within Psyr_3607 at 4291.044 kb on + strand, within Psyr_3607 at 4291.045 kb on - strand, within Psyr_3607 at 4291.211 kb on - strand, within Psyr_3607 at 4291.211 kb on - strand, within Psyr_3607 at 4291.213 kb on + strand, within Psyr_3607 at 4291.214 kb on - strand, within Psyr_3607 at 4291.214 kb on - strand, within Psyr_3607 at 4291.214 kb on - strand, within Psyr_3607 at 4291.214 kb on - strand, within Psyr_3607
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Strychnine Sulfate 10 mM remove 4,288,401 - Psyr_3605 0.58 +0.8 4,288,533 - Psyr_3605 0.64 -1.0 4,288,550 + Psyr_3605 0.65 +0.5 4,288,561 - Psyr_3605 0.65 +0.1 4,288,636 - Psyr_3605 0.69 -1.4 4,288,669 - Psyr_3605 0.70 -0.1 4,288,863 + Psyr_3605 0.79 +0.6 4,288,863 + Psyr_3605 0.79 -0.0 4,288,863 + Psyr_3605 0.79 -0.9 4,288,864 - Psyr_3605 0.79 +0.6 4,288,864 - Psyr_3605 0.79 -0.5 4,288,934 + Psyr_3605 0.82 +0.2 4,288,934 + Psyr_3605 0.82 -0.2 4,288,935 - Psyr_3605 0.82 +0.5 4,288,955 + Psyr_3605 0.83 +0.2 4,288,972 - Psyr_3605 0.83 -0.9 4,289,046 + Psyr_3605 0.87 -0.4 4,289,221 - -0.2 4,289,221 - +0.3 4,289,394 + +0.4 4,289,394 + +0.3 4,289,806 + Psyr_3606 0.43 +1.3 4,289,806 + Psyr_3606 0.43 +0.4 4,289,807 - Psyr_3606 0.43 -0.5 4,289,820 - Psyr_3606 0.44 -0.0 4,290,126 - Psyr_3606 0.76 +1.2 4,290,196 + Psyr_3606 0.83 +0.8 4,290,196 + Psyr_3606 0.83 +0.5 4,290,197 - Psyr_3606 0.83 -0.8 4,290,197 - Psyr_3606 0.83 +0.3 4,290,201 + Psyr_3606 0.84 +1.0 4,290,202 - Psyr_3606 0.84 -0.5 4,290,202 - Psyr_3606 0.84 +1.4 4,290,202 - Psyr_3606 0.84 -0.1 4,290,202 - Psyr_3606 0.84 +0.8 4,290,248 - Psyr_3606 0.88 +0.5 4,290,363 + +0.1 4,290,363 + +0.3 4,290,364 - -0.6 4,290,364 - -0.9 4,290,364 - +0.6 4,290,364 - +0.0 4,290,364 - +0.9 4,290,364 - +0.2 4,290,364 - +0.7 4,290,364 - -0.6 4,290,364 - -0.9 4,290,697 + Psyr_3607 0.22 -0.0 4,290,697 + Psyr_3607 0.22 +0.0 4,290,698 - Psyr_3607 0.22 -0.3 4,290,698 - Psyr_3607 0.22 -1.0 4,290,698 - Psyr_3607 0.22 +1.2 4,290,698 - Psyr_3607 0.22 -0.2 4,290,747 - Psyr_3607 0.27 +0.4 4,290,759 - Psyr_3607 0.29 -0.6 4,290,896 - Psyr_3607 0.44 -0.4 4,290,913 + Psyr_3607 0.46 +0.6 4,290,913 + Psyr_3607 0.46 +0.3 4,290,914 - Psyr_3607 0.46 +1.3 4,290,914 - Psyr_3607 0.46 +0.6 4,290,991 + Psyr_3607 0.54 -0.9 4,290,991 + Psyr_3607 0.54 -1.1 4,291,044 + Psyr_3607 0.60 +0.9 4,291,045 - Psyr_3607 0.60 +1.7 4,291,211 - Psyr_3607 0.78 -0.7 4,291,211 - Psyr_3607 0.78 -0.1 4,291,213 + Psyr_3607 0.79 +0.6 4,291,214 - Psyr_3607 0.79 +0.3 4,291,214 - Psyr_3607 0.79 -0.4 4,291,214 - Psyr_3607 0.79 -1.1 4,291,214 - Psyr_3607 0.79 +0.0
Or see this region's nucleotide sequence