Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2605

Experiment: KB with Strychnine Sulfate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2603 and Psyr_2604 are separated by 245 nucleotidesPsyr_2604 and Psyr_2605 are separated by 96 nucleotidesPsyr_2605 and Psyr_2606 are separated by 451 nucleotides Psyr_2603: Psyr_2603 - Secretion protein HlyD, at 3,057,159 to 3,058,328 _2603 Psyr_2604: Psyr_2604 - conserved hypothetical protein; putative membrane protein, at 3,058,574 to 3,059,179 _2604 Psyr_2605: Psyr_2605 - transposase, putative, at 3,059,276 to 3,059,773 _2605 Psyr_2606: Psyr_2606 - RND efflux system, outer membrane lipoprotein, NodT, at 3,060,225 to 3,061,661 _2606 Position (kb) 3059 3060Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3058.333 kb on - strandat 3058.346 kb on - strandat 3058.346 kb on - strandat 3058.423 kb on - strandat 3058.433 kb on + strandat 3058.433 kb on + strandat 3058.433 kb on + strandat 3058.445 kb on + strandat 3058.445 kb on + strandat 3058.445 kb on + strandat 3058.446 kb on - strandat 3058.446 kb on - strandat 3058.446 kb on - strandat 3058.446 kb on - strandat 3058.446 kb on - strandat 3058.499 kb on + strandat 3058.499 kb on + strandat 3058.528 kb on - strandat 3058.567 kb on - strandat 3058.583 kb on + strandat 3058.583 kb on + strandat 3058.583 kb on + strandat 3058.583 kb on + strandat 3058.583 kb on + strandat 3058.583 kb on + strandat 3058.583 kb on + strandat 3058.584 kb on - strandat 3058.584 kb on - strandat 3058.584 kb on - strandat 3058.584 kb on - strandat 3058.584 kb on - strandat 3058.586 kb on + strandat 3058.587 kb on - strandat 3058.675 kb on + strand, within Psyr_2604at 3058.676 kb on - strand, within Psyr_2604at 3058.715 kb on + strand, within Psyr_2604at 3058.715 kb on + strand, within Psyr_2604at 3058.715 kb on + strand, within Psyr_2604at 3058.716 kb on - strand, within Psyr_2604at 3058.716 kb on - strand, within Psyr_2604at 3058.716 kb on - strand, within Psyr_2604at 3058.769 kb on + strand, within Psyr_2604at 3058.769 kb on + strand, within Psyr_2604at 3058.769 kb on + strand, within Psyr_2604at 3058.770 kb on - strand, within Psyr_2604at 3058.820 kb on + strand, within Psyr_2604at 3058.820 kb on + strand, within Psyr_2604at 3058.820 kb on + strand, within Psyr_2604at 3059.071 kb on - strand, within Psyr_2604at 3059.148 kb on - strandat 3059.219 kb on - strandat 3059.222 kb on + strandat 3059.222 kb on + strandat 3059.222 kb on + strandat 3059.222 kb on + strandat 3059.223 kb on - strandat 3059.223 kb on - strandat 3059.223 kb on - strandat 3059.223 kb on - strandat 3059.226 kb on + strandat 3059.226 kb on + strandat 3059.226 kb on + strandat 3059.226 kb on + strandat 3059.226 kb on + strandat 3059.226 kb on + strandat 3059.226 kb on + strandat 3059.226 kb on + strandat 3059.227 kb on - strandat 3059.227 kb on - strandat 3059.227 kb on - strandat 3059.230 kb on + strandat 3059.230 kb on + strandat 3059.246 kb on + strandat 3059.246 kb on + strandat 3059.246 kb on + strandat 3059.246 kb on + strandat 3059.246 kb on + strandat 3059.246 kb on + strandat 3059.247 kb on - strandat 3059.247 kb on - strandat 3059.247 kb on - strandat 3059.247 kb on - strandat 3059.292 kb on + strandat 3059.292 kb on + strandat 3059.293 kb on - strandat 3059.293 kb on - strandat 3059.293 kb on - strandat 3059.293 kb on - strandat 3059.481 kb on + strand, within Psyr_2605at 3059.481 kb on + strand, within Psyr_2605at 3059.482 kb on - strand, within Psyr_2605at 3059.482 kb on - strand, within Psyr_2605at 3059.605 kb on + strand, within Psyr_2605at 3059.605 kb on + strand, within Psyr_2605at 3059.605 kb on + strand, within Psyr_2605at 3059.606 kb on - strand, within Psyr_2605at 3059.606 kb on - strand, within Psyr_2605at 3059.656 kb on - strand, within Psyr_2605at 3059.673 kb on + strand, within Psyr_2605at 3059.674 kb on - strand, within Psyr_2605at 3059.674 kb on - strand, within Psyr_2605at 3059.752 kb on + strandat 3059.752 kb on + strandat 3059.752 kb on + strandat 3059.752 kb on + strandat 3059.752 kb on + strandat 3059.752 kb on + strandat 3059.753 kb on - strandat 3059.753 kb on - strandat 3059.772 kb on - strandat 3059.792 kb on + strandat 3059.793 kb on - strandat 3060.064 kb on - strandat 3060.185 kb on + strandat 3060.185 kb on + strandat 3060.186 kb on - strandat 3060.186 kb on - strandat 3060.186 kb on - strandat 3060.206 kb on + strandat 3060.207 kb on - strandat 3060.207 kb on - strandat 3060.207 kb on - strandat 3060.242 kb on + strandat 3060.242 kb on + strandat 3060.242 kb on + strandat 3060.242 kb on + strandat 3060.242 kb on + strandat 3060.243 kb on - strandat 3060.243 kb on - strandat 3060.339 kb on + strandat 3060.412 kb on + strand, within Psyr_2606at 3060.415 kb on + strand, within Psyr_2606at 3060.415 kb on + strand, within Psyr_2606at 3060.416 kb on - strand, within Psyr_2606at 3060.416 kb on - strand, within Psyr_2606at 3060.466 kb on + strand, within Psyr_2606at 3060.466 kb on + strand, within Psyr_2606at 3060.466 kb on + strand, within Psyr_2606at 3060.467 kb on - strand, within Psyr_2606at 3060.529 kb on + strand, within Psyr_2606at 3060.533 kb on + strand, within Psyr_2606at 3060.534 kb on - strand, within Psyr_2606at 3060.534 kb on - strand, within Psyr_2606at 3060.543 kb on + strand, within Psyr_2606at 3060.543 kb on + strand, within Psyr_2606at 3060.543 kb on + strand, within Psyr_2606at 3060.543 kb on + strand, within Psyr_2606at 3060.543 kb on + strand, within Psyr_2606at 3060.544 kb on - strand, within Psyr_2606at 3060.544 kb on - strand, within Psyr_2606at 3060.544 kb on - strand, within Psyr_2606at 3060.544 kb on - strand, within Psyr_2606at 3060.544 kb on - strand, within Psyr_2606at 3060.545 kb on + strand, within Psyr_2606at 3060.545 kb on + strand, within Psyr_2606at 3060.545 kb on + strand, within Psyr_2606at 3060.545 kb on + strand, within Psyr_2606at 3060.546 kb on - strand, within Psyr_2606at 3060.702 kb on - strand, within Psyr_2606

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Strychnine Sulfate 10 mM
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3,058,333 - -1.1
3,058,346 - -1.2
3,058,346 - +0.1
3,058,423 - -2.6
3,058,433 + -0.2
3,058,433 + -1.6
3,058,433 + -1.9
3,058,445 + -0.1
3,058,445 + +0.0
3,058,445 + +1.0
3,058,446 - -1.9
3,058,446 - -1.5
3,058,446 - +0.1
3,058,446 - -0.3
3,058,446 - -1.2
3,058,499 + -0.7
3,058,499 + -0.5
3,058,528 - -1.7
3,058,567 - -1.7
3,058,583 + +0.2
3,058,583 + -0.2
3,058,583 + -0.2
3,058,583 + +0.5
3,058,583 + -1.2
3,058,583 + +0.1
3,058,583 + +0.8
3,058,584 - -0.5
3,058,584 - -2.4
3,058,584 - -1.5
3,058,584 - -0.5
3,058,584 - -1.2
3,058,586 + -0.8
3,058,587 - +0.1
3,058,675 + Psyr_2604 0.17 -1.6
3,058,676 - Psyr_2604 0.17 +0.4
3,058,715 + Psyr_2604 0.23 +0.6
3,058,715 + Psyr_2604 0.23 +1.1
3,058,715 + Psyr_2604 0.23 -0.5
3,058,716 - Psyr_2604 0.23 -1.9
3,058,716 - Psyr_2604 0.23 +0.4
3,058,716 - Psyr_2604 0.23 -1.2
3,058,769 + Psyr_2604 0.32 -1.7
3,058,769 + Psyr_2604 0.32 -1.2
3,058,769 + Psyr_2604 0.32 +0.6
3,058,770 - Psyr_2604 0.32 +1.1
3,058,820 + Psyr_2604 0.41 -1.7
3,058,820 + Psyr_2604 0.41 +0.3
3,058,820 + Psyr_2604 0.41 +0.4
3,059,071 - Psyr_2604 0.82 +1.1
3,059,148 - +0.2
3,059,219 - -0.3
3,059,222 + -0.4
3,059,222 + -0.3
3,059,222 + -0.9
3,059,222 + +1.4
3,059,223 - -0.5
3,059,223 - +0.5
3,059,223 - +1.0
3,059,223 - +0.9
3,059,226 + -0.7
3,059,226 + +0.6
3,059,226 + -2.5
3,059,226 + -0.3
3,059,226 + +0.7
3,059,226 + +0.6
3,059,226 + +1.5
3,059,226 + -1.9
3,059,227 - +0.1
3,059,227 - +0.1
3,059,227 - +1.3
3,059,230 + -0.7
3,059,230 + -0.3
3,059,246 + -0.6
3,059,246 + +0.3
3,059,246 + -0.3
3,059,246 + -0.3
3,059,246 + -0.1
3,059,246 + +0.1
3,059,247 - -0.6
3,059,247 - +0.2
3,059,247 - -0.9
3,059,247 - -1.5
3,059,292 + +0.5
3,059,292 + +1.1
3,059,293 - -0.1
3,059,293 - -0.4
3,059,293 - +0.7
3,059,293 - +0.8
3,059,481 + Psyr_2605 0.41 +0.7
3,059,481 + Psyr_2605 0.41 +1.1
3,059,482 - Psyr_2605 0.41 +0.5
3,059,482 - Psyr_2605 0.41 +1.1
3,059,605 + Psyr_2605 0.66 +1.2
3,059,605 + Psyr_2605 0.66 +2.8
3,059,605 + Psyr_2605 0.66 -0.7
3,059,606 - Psyr_2605 0.66 -0.6
3,059,606 - Psyr_2605 0.66 +0.2
3,059,656 - Psyr_2605 0.76 -0.1
3,059,673 + Psyr_2605 0.80 +1.2
3,059,674 - Psyr_2605 0.80 +0.4
3,059,674 - Psyr_2605 0.80 -1.2
3,059,752 + +1.6
3,059,752 + +0.8
3,059,752 + -1.2
3,059,752 + -0.2
3,059,752 + +1.1
3,059,752 + +0.9
3,059,753 - -0.4
3,059,753 - -1.0
3,059,772 - -0.9
3,059,792 + -0.5
3,059,793 - +1.7
3,060,064 - +1.9
3,060,185 + +0.3
3,060,185 + -1.1
3,060,186 - -0.6
3,060,186 - -0.2
3,060,186 - -0.1
3,060,206 + +1.1
3,060,207 - +1.2
3,060,207 - +0.4
3,060,207 - -0.6
3,060,242 + -2.5
3,060,242 + -0.8
3,060,242 + +0.4
3,060,242 + +1.5
3,060,242 + +1.1
3,060,243 - -0.5
3,060,243 - +1.8
3,060,339 + -0.6
3,060,412 + Psyr_2606 0.13 +0.5
3,060,415 + Psyr_2606 0.13 +0.4
3,060,415 + Psyr_2606 0.13 -0.3
3,060,416 - Psyr_2606 0.13 -2.2
3,060,416 - Psyr_2606 0.13 -1.1
3,060,466 + Psyr_2606 0.17 +0.6
3,060,466 + Psyr_2606 0.17 -0.2
3,060,466 + Psyr_2606 0.17 +0.9
3,060,467 - Psyr_2606 0.17 +1.3
3,060,529 + Psyr_2606 0.21 -0.2
3,060,533 + Psyr_2606 0.21 +0.2
3,060,534 - Psyr_2606 0.22 -0.1
3,060,534 - Psyr_2606 0.22 -0.9
3,060,543 + Psyr_2606 0.22 -0.5
3,060,543 + Psyr_2606 0.22 -2.5
3,060,543 + Psyr_2606 0.22 +0.9
3,060,543 + Psyr_2606 0.22 -0.2
3,060,543 + Psyr_2606 0.22 +1.1
3,060,544 - Psyr_2606 0.22 -0.3
3,060,544 - Psyr_2606 0.22 +1.5
3,060,544 - Psyr_2606 0.22 -0.6
3,060,544 - Psyr_2606 0.22 +0.7
3,060,544 - Psyr_2606 0.22 -1.5
3,060,545 + Psyr_2606 0.22 +1.4
3,060,545 + Psyr_2606 0.22 +1.1
3,060,545 + Psyr_2606 0.22 -1.5
3,060,545 + Psyr_2606 0.22 -1.2
3,060,546 - Psyr_2606 0.22 +0.6
3,060,702 - Psyr_2606 0.33 -0.9

Or see this region's nucleotide sequence