Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2541

Experiment: KB with Strychnine Sulfate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2540 and Psyr_2541 overlap by 11 nucleotidesPsyr_2541 and Psyr_2542 are separated by 51 nucleotides Psyr_2539: Psyr_2539 - Binding-protein-dependent transport systems inner membrane component, at 2,954,424 to 2,955,344 _2539 Psyr_2540: Psyr_2540 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal, at 2,955,341 to 2,956,354 _2540 Psyr_2541: Psyr_2541 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal, at 2,956,344 to 2,957,357 _2541 Psyr_2542: Psyr_2542 - extracellular solute-binding protein, family 5, at 2,957,409 to 2,958,974 _2542 Position (kb) 2956 2957 2958Strain fitness (log2 ratio) -2 -1 0 1 2at 2955.366 kb on + strandat 2956.065 kb on - strand, within Psyr_2540at 2956.105 kb on - strand, within Psyr_2540at 2956.105 kb on - strand, within Psyr_2540at 2956.105 kb on - strand, within Psyr_2540at 2956.785 kb on + strand, within Psyr_2541at 2956.785 kb on + strand, within Psyr_2541at 2956.785 kb on + strand, within Psyr_2541at 2956.786 kb on - strand, within Psyr_2541at 2956.786 kb on - strand, within Psyr_2541at 2956.802 kb on - strand, within Psyr_2541at 2957.010 kb on + strand, within Psyr_2541at 2957.010 kb on + strand, within Psyr_2541at 2957.011 kb on - strand, within Psyr_2541at 2957.073 kb on + strand, within Psyr_2541at 2957.073 kb on + strand, within Psyr_2541at 2957.074 kb on - strand, within Psyr_2541at 2957.074 kb on - strand, within Psyr_2541at 2957.074 kb on - strand, within Psyr_2541at 2957.137 kb on - strand, within Psyr_2541at 2957.394 kb on + strandat 2957.395 kb on - strandat 2957.535 kb on + strandat 2957.535 kb on + strandat 2957.535 kb on + strandat 2957.536 kb on - strandat 2957.536 kb on - strandat 2957.763 kb on + strand, within Psyr_2542at 2957.764 kb on - strand, within Psyr_2542at 2957.874 kb on + strand, within Psyr_2542at 2957.874 kb on + strand, within Psyr_2542at 2957.874 kb on + strand, within Psyr_2542at 2957.875 kb on - strand, within Psyr_2542at 2957.875 kb on - strand, within Psyr_2542at 2957.875 kb on - strand, within Psyr_2542at 2957.875 kb on - strand, within Psyr_2542at 2957.919 kb on + strand, within Psyr_2542at 2958.286 kb on + strand, within Psyr_2542at 2958.287 kb on - strand, within Psyr_2542at 2958.287 kb on - strand, within Psyr_2542at 2958.287 kb on - strand, within Psyr_2542

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Strychnine Sulfate 10 mM
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2,955,366 + -0.3
2,956,065 - Psyr_2540 0.71 -0.3
2,956,105 - Psyr_2540 0.75 -0.7
2,956,105 - Psyr_2540 0.75 -2.1
2,956,105 - Psyr_2540 0.75 -0.3
2,956,785 + Psyr_2541 0.43 +0.9
2,956,785 + Psyr_2541 0.43 +0.2
2,956,785 + Psyr_2541 0.43 +0.1
2,956,786 - Psyr_2541 0.44 +1.4
2,956,786 - Psyr_2541 0.44 +0.1
2,956,802 - Psyr_2541 0.45 -0.5
2,957,010 + Psyr_2541 0.66 -0.7
2,957,010 + Psyr_2541 0.66 +2.5
2,957,011 - Psyr_2541 0.66 +0.1
2,957,073 + Psyr_2541 0.72 -2.6
2,957,073 + Psyr_2541 0.72 +0.5
2,957,074 - Psyr_2541 0.72 +0.3
2,957,074 - Psyr_2541 0.72 +1.4
2,957,074 - Psyr_2541 0.72 +0.2
2,957,137 - Psyr_2541 0.78 +0.4
2,957,394 + -0.5
2,957,395 - +0.5
2,957,535 + -0.1
2,957,535 + -0.8
2,957,535 + +0.4
2,957,536 - -0.3
2,957,536 - +1.1
2,957,763 + Psyr_2542 0.23 -0.1
2,957,764 - Psyr_2542 0.23 -0.6
2,957,874 + Psyr_2542 0.30 -0.2
2,957,874 + Psyr_2542 0.30 +0.4
2,957,874 + Psyr_2542 0.30 -0.5
2,957,875 - Psyr_2542 0.30 +2.4
2,957,875 - Psyr_2542 0.30 +1.0
2,957,875 - Psyr_2542 0.30 -0.5
2,957,875 - Psyr_2542 0.30 +0.6
2,957,919 + Psyr_2542 0.33 -0.4
2,958,286 + Psyr_2542 0.56 -0.5
2,958,287 - Psyr_2542 0.56 +0.1
2,958,287 - Psyr_2542 0.56 +0.1
2,958,287 - Psyr_2542 0.56 +2.6

Or see this region's nucleotide sequence