Experiment: KB with Myricetin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3524 and Psyr_3525 are separated by 3 nucleotides Psyr_3525 and Psyr_3526 are separated by 161 nucleotides
Psyr_3524: Psyr_3524 - Aldehyde dehydrogenase (NAD+), at 4,200,283 to 4,201,800
_3524
Psyr_3525: Psyr_3525 - 3-hydroxyisobutyrate dehydrogenase, at 4,201,804 to 4,202,694
_3525
Psyr_3526: Psyr_3526 - transcriptional regulator, LysR family, at 4,202,856 to 4,203,761
_3526
Position (kb) 4201
4202
4203 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4201.321 kb on - strand, within Psyr_3524 at 4201.349 kb on + strand, within Psyr_3524 at 4201.349 kb on + strand, within Psyr_3524 at 4201.358 kb on + strand, within Psyr_3524 at 4201.358 kb on + strand, within Psyr_3524 at 4201.358 kb on + strand, within Psyr_3524 at 4201.358 kb on + strand, within Psyr_3524 at 4201.358 kb on + strand, within Psyr_3524 at 4201.358 kb on + strand, within Psyr_3524 at 4201.358 kb on + strand, within Psyr_3524 at 4201.358 kb on + strand, within Psyr_3524 at 4201.359 kb on - strand, within Psyr_3524 at 4201.359 kb on - strand, within Psyr_3524 at 4201.359 kb on - strand, within Psyr_3524 at 4201.359 kb on - strand, within Psyr_3524 at 4201.359 kb on - strand, within Psyr_3524 at 4201.359 kb on - strand, within Psyr_3524 at 4201.359 kb on - strand, within Psyr_3524 at 4201.359 kb on - strand, within Psyr_3524 at 4201.359 kb on - strand, within Psyr_3524 at 4201.359 kb on - strand, within Psyr_3524 at 4201.359 kb on - strand, within Psyr_3524 at 4201.359 kb on - strand, within Psyr_3524 at 4201.359 kb on - strand, within Psyr_3524 at 4201.359 kb on - strand, within Psyr_3524 at 4201.421 kb on + strand, within Psyr_3524 at 4201.421 kb on + strand, within Psyr_3524 at 4201.422 kb on - strand, within Psyr_3524 at 4201.422 kb on - strand, within Psyr_3524 at 4201.422 kb on - strand, within Psyr_3524 at 4201.424 kb on + strand, within Psyr_3524 at 4201.425 kb on - strand, within Psyr_3524 at 4201.425 kb on - strand, within Psyr_3524 at 4201.547 kb on + strand, within Psyr_3524 at 4201.547 kb on + strand, within Psyr_3524 at 4201.548 kb on - strand, within Psyr_3524 at 4201.548 kb on - strand, within Psyr_3524 at 4201.548 kb on - strand, within Psyr_3524 at 4201.548 kb on - strand, within Psyr_3524 at 4201.548 kb on - strand, within Psyr_3524 at 4201.733 kb on + strand at 4201.733 kb on + strand at 4201.733 kb on + strand at 4201.733 kb on + strand at 4201.733 kb on + strand at 4201.734 kb on - strand at 4201.734 kb on - strand at 4201.734 kb on - strand at 4201.734 kb on - strand at 4201.734 kb on - strand at 4201.805 kb on + strand at 4201.806 kb on - strand at 4202.006 kb on + strand, within Psyr_3525 at 4202.006 kb on + strand, within Psyr_3525 at 4202.007 kb on - strand, within Psyr_3525 at 4202.007 kb on - strand, within Psyr_3525 at 4202.424 kb on + strand, within Psyr_3525 at 4202.727 kb on + strand at 4202.825 kb on + strand at 4202.825 kb on + strand at 4202.825 kb on + strand at 4202.825 kb on + strand at 4203.063 kb on + strand, within Psyr_3526 at 4203.063 kb on + strand, within Psyr_3526 at 4203.063 kb on + strand, within Psyr_3526 at 4203.063 kb on + strand, within Psyr_3526 at 4203.063 kb on + strand, within Psyr_3526 at 4203.210 kb on + strand, within Psyr_3526 at 4203.211 kb on - strand, within Psyr_3526 at 4203.211 kb on - strand, within Psyr_3526 at 4203.407 kb on - strand, within Psyr_3526 at 4203.407 kb on - strand, within Psyr_3526 at 4203.607 kb on + strand, within Psyr_3526 at 4203.607 kb on + strand, within Psyr_3526 at 4203.607 kb on + strand, within Psyr_3526 at 4203.608 kb on - strand, within Psyr_3526
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Myricetin 10 mM remove 4,201,321 - Psyr_3524 0.68 -0.1 4,201,349 + Psyr_3524 0.70 +2.0 4,201,349 + Psyr_3524 0.70 -0.0 4,201,358 + Psyr_3524 0.71 -0.6 4,201,358 + Psyr_3524 0.71 -0.4 4,201,358 + Psyr_3524 0.71 -2.2 4,201,358 + Psyr_3524 0.71 +0.1 4,201,358 + Psyr_3524 0.71 +0.9 4,201,358 + Psyr_3524 0.71 +1.0 4,201,358 + Psyr_3524 0.71 -1.0 4,201,358 + Psyr_3524 0.71 +0.7 4,201,359 - Psyr_3524 0.71 -0.2 4,201,359 - Psyr_3524 0.71 +1.6 4,201,359 - Psyr_3524 0.71 +1.3 4,201,359 - Psyr_3524 0.71 +0.4 4,201,359 - Psyr_3524 0.71 +0.6 4,201,359 - Psyr_3524 0.71 +0.3 4,201,359 - Psyr_3524 0.71 -0.1 4,201,359 - Psyr_3524 0.71 -0.0 4,201,359 - Psyr_3524 0.71 +0.2 4,201,359 - Psyr_3524 0.71 +0.9 4,201,359 - Psyr_3524 0.71 -0.5 4,201,359 - Psyr_3524 0.71 -0.1 4,201,359 - Psyr_3524 0.71 +0.1 4,201,359 - Psyr_3524 0.71 +0.1 4,201,421 + Psyr_3524 0.75 -0.8 4,201,421 + Psyr_3524 0.75 -0.2 4,201,422 - Psyr_3524 0.75 +0.4 4,201,422 - Psyr_3524 0.75 -0.5 4,201,422 - Psyr_3524 0.75 +0.1 4,201,424 + Psyr_3524 0.75 -2.2 4,201,425 - Psyr_3524 0.75 +0.3 4,201,425 - Psyr_3524 0.75 +1.0 4,201,547 + Psyr_3524 0.83 -1.8 4,201,547 + Psyr_3524 0.83 -0.0 4,201,548 - Psyr_3524 0.83 -0.0 4,201,548 - Psyr_3524 0.83 +1.0 4,201,548 - Psyr_3524 0.83 -0.0 4,201,548 - Psyr_3524 0.83 +0.7 4,201,548 - Psyr_3524 0.83 +0.7 4,201,733 + -0.6 4,201,733 + +0.3 4,201,733 + -0.3 4,201,733 + +0.5 4,201,733 + -0.0 4,201,734 - +0.7 4,201,734 - -0.1 4,201,734 - -0.4 4,201,734 - +0.2 4,201,734 - -0.4 4,201,805 + -0.8 4,201,806 - -0.1 4,202,006 + Psyr_3525 0.23 -0.2 4,202,006 + Psyr_3525 0.23 +0.5 4,202,007 - Psyr_3525 0.23 +0.4 4,202,007 - Psyr_3525 0.23 +0.7 4,202,424 + Psyr_3525 0.70 +1.1 4,202,727 + -0.0 4,202,825 + -0.4 4,202,825 + -0.3 4,202,825 + -1.8 4,202,825 + +0.5 4,203,063 + Psyr_3526 0.23 -0.3 4,203,063 + Psyr_3526 0.23 -0.4 4,203,063 + Psyr_3526 0.23 -0.5 4,203,063 + Psyr_3526 0.23 +0.9 4,203,063 + Psyr_3526 0.23 -0.7 4,203,210 + Psyr_3526 0.39 +0.8 4,203,211 - Psyr_3526 0.39 -1.3 4,203,211 - Psyr_3526 0.39 -0.3 4,203,407 - Psyr_3526 0.61 +0.6 4,203,407 - Psyr_3526 0.61 -0.1 4,203,607 + Psyr_3526 0.83 -0.1 4,203,607 + Psyr_3526 0.83 -0.2 4,203,607 + Psyr_3526 0.83 -0.1 4,203,608 - Psyr_3526 0.83 -0.2
Or see this region's nucleotide sequence