Experiment: KB with Myricetin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1718 and Psyr_1719 overlap by 8 nucleotides Psyr_1719 and Psyr_1720 overlap by 4 nucleotides Psyr_1720 and Psyr_1721 are separated by 4 nucleotides
Psyr_1718: Psyr_1718 - von Willebrand factor, type A, at 1,947,945 to 1,949,003
_1718
Psyr_1719: Psyr_1719 - conserved hypothetical protein, at 1,948,996 to 1,949,490
_1719
Psyr_1720: Psyr_1720 - Protein of unknown function DUF58, at 1,949,487 to 1,950,431
_1720
Psyr_1721: Psyr_1721 - moxR protein, putative, at 1,950,436 to 1,951,395
_1721
Position (kb) 1948
1949
1950 Strain fitness (log2 ratio) -1
0
1
2 at 1948.093 kb on + strand, within Psyr_1718 at 1948.201 kb on + strand, within Psyr_1718 at 1948.202 kb on - strand, within Psyr_1718 at 1948.439 kb on + strand, within Psyr_1718 at 1948.547 kb on - strand, within Psyr_1718 at 1948.547 kb on - strand, within Psyr_1718 at 1949.078 kb on + strand, within Psyr_1719 at 1949.155 kb on - strand, within Psyr_1719 at 1949.170 kb on - strand, within Psyr_1719 at 1949.262 kb on - strand, within Psyr_1719 at 1949.521 kb on + strand at 1949.996 kb on - strand, within Psyr_1720 at 1949.996 kb on - strand, within Psyr_1720 at 1950.200 kb on + strand, within Psyr_1720 at 1950.201 kb on - strand, within Psyr_1720 at 1950.250 kb on + strand, within Psyr_1720 at 1950.251 kb on - strand, within Psyr_1720
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Myricetin 10 mM remove 1,948,093 + Psyr_1718 0.14 -0.6 1,948,201 + Psyr_1718 0.24 -1.7 1,948,202 - Psyr_1718 0.24 +0.6 1,948,439 + Psyr_1718 0.47 -0.6 1,948,547 - Psyr_1718 0.57 -0.6 1,948,547 - Psyr_1718 0.57 -0.5 1,949,078 + Psyr_1719 0.17 -0.2 1,949,155 - Psyr_1719 0.32 -0.2 1,949,170 - Psyr_1719 0.35 -0.6 1,949,262 - Psyr_1719 0.54 -1.4 1,949,521 + +0.6 1,949,996 - Psyr_1720 0.54 -0.2 1,949,996 - Psyr_1720 0.54 -0.3 1,950,200 + Psyr_1720 0.75 +1.8 1,950,201 - Psyr_1720 0.76 -0.2 1,950,250 + Psyr_1720 0.81 +0.4 1,950,251 - Psyr_1720 0.81 +0.1
Or see this region's nucleotide sequence