Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1478

Experiment: KB with 2',2'-Bisepigallocatechin Digallate 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with 2',2'-Bisepigallocatechin Digallate 10 mM
1,666,238	+				-1.2
1,666,239	-				-0.4
1,666,239	-				+1.1
1,666,239	-				+0.7
1,666,239	-				+0.1
1,666,261	+				+0.6
1,666,261	+				-0.1
1,666,261	+				+0.0
1,666,261	+				-0.6
1,666,261	+				+0.4
1,666,261	+				+0.3
1,666,261	+				-0.3
1,666,261	+				+0.3
1,666,261	+				-0.7
1,666,261	+				+0.4
1,666,262	-				-0.4
1,666,262	-				-0.2
1,666,262	-				-0.7
1,666,262	-				+1.6
1,666,262	-				-0.1
1,666,262	-				+0.0
1,666,262	-				+1.3
1,666,390	+		Psyr_1477	0.21	-0.0
1,666,390	+		Psyr_1477	0.21	-0.4
1,666,516	+		Psyr_1477	0.34	-0.7
1,666,516	+		Psyr_1477	0.34	+1.1
1,666,589	+		Psyr_1477	0.41	+0.8
1,666,590	-		Psyr_1477	0.41	+0.3
1,666,613	+		Psyr_1477	0.43	-0.8
1,666,614	-		Psyr_1477	0.44	-1.2
1,666,642	+		Psyr_1477	0.46	-0.4
1,666,643	-		Psyr_1477	0.46	+0.6
1,666,643	-		Psyr_1477	0.46	-1.3
1,666,666	-		Psyr_1477	0.49	-0.3
1,666,701	+		Psyr_1477	0.52	-0.3
1,666,711	-		Psyr_1477	0.53	+2.5
1,666,711	-		Psyr_1477	0.53	-0.0
1,666,771	+		Psyr_1477	0.59	-0.3
1,666,830	-		Psyr_1477	0.65	+0.8
1,666,845	+		Psyr_1477	0.67	+0.0
1,666,897	+		Psyr_1477	0.72	-0.5
1,666,897	+		Psyr_1477	0.72	+1.1
1,666,897	+		Psyr_1477	0.72	+0.6
1,666,898	-		Psyr_1477	0.72	+0.3
1,666,898	-		Psyr_1477	0.72	+0.1
1,666,898	-		Psyr_1477	0.72	-0.4
1,666,898	-		Psyr_1477	0.72	+1.6
1,666,898	-		Psyr_1477	0.72	-0.9
1,666,898	-		Psyr_1477	0.72	-1.9
1,666,898	-		Psyr_1477	0.72	-0.2
1,666,898	-		Psyr_1477	0.72	-0.5
1,666,929	-		Psyr_1477	0.75	+0.4
1,666,929	-		Psyr_1477	0.75	-2.2
1,666,929	-		Psyr_1477	0.75	+0.8
1,666,971	-		Psyr_1477	0.79	+0.5
1,666,987	+		Psyr_1477	0.81	+0.7
1,666,987	+		Psyr_1477	0.81	-1.7
1,666,987	+		Psyr_1477	0.81	+2.7
1,666,987	+		Psyr_1477	0.81	+0.7
1,666,995	+		Psyr_1477	0.82	-0.1
1,666,995	+		Psyr_1477	0.82	-1.0
1,666,995	+		Psyr_1477	0.82	+0.9
1,666,996	-		Psyr_1477	0.82	-0.4
1,666,996	-		Psyr_1477	0.82	+0.7
1,667,014	+		Psyr_1477	0.84	+0.6
1,667,014	+		Psyr_1477	0.84	-2.6
1,667,015	-		Psyr_1477	0.84	+0.3
1,667,015	-		Psyr_1477	0.84	-0.7
1,667,015	-		Psyr_1477	0.84	+0.8
1,667,070	-		Psyr_1477	0.89	-2.6
1,667,189	-				+1.0
1,667,189	-				+1.1
1,667,193	+				+0.3
1,667,194	-				-0.0
1,667,222	+				+0.9
1,667,222	+				+1.1
1,667,222	+				+0.5
1,667,223	-				-0.9
1,667,223	-				-0.6
1,667,224	+				-0.1
1,667,224	+				-0.7
1,667,224	+				-0.5
1,667,224	+				+1.5
1,667,224	+				-0.6
1,667,224	+				-0.4
1,667,224	+				-0.4
1,667,224	+				+0.9
1,667,224	+				-0.4
1,667,224	+				+0.7
1,667,224	+				+0.0
1,667,224	+				-0.3
1,667,224	+				-0.1
1,667,224	+				-0.4
1,667,224	+				-0.2
1,667,224	+				-0.5
1,667,224	+				-1.4
1,667,224	+				-1.4
1,667,224	+				+1.4
1,667,224	+				-0.4
1,667,224	+				+2.1
1,667,224	+				-0.6
1,667,224	+				+0.4
1,667,224	+				+0.6
1,667,225	-				+0.0
1,667,225	-				-0.0
1,667,225	-				+1.1
1,667,225	-				-0.2
1,667,225	-				+0.9
1,667,225	-				-0.2
1,667,225	-				-0.2
1,667,225	-				-0.7
1,667,225	-				-0.6
1,667,225	-				-2.8
1,667,225	-				+0.5
1,667,225	-				+0.0
1,667,225	-				-0.2
1,667,225	-				+0.9
1,667,225	-				-2.4
1,667,225	-				-0.2
1,667,225	-				+2.4
1,667,225	-				+0.1
1,667,225	-				-0.7
1,667,225	-				-1.1
1,667,225	-				-0.2
1,667,262	+				+0.4
1,667,262	+				-0.8
1,667,263	-				-0.8
1,667,275	+				+0.5
1,667,275	+				+0.2
1,667,276	-				-0.3
1,667,308	+		Psyr_1478	0.12	-0.6
1,667,309	-		Psyr_1478	0.12	-0.1
1,667,319	+		Psyr_1478	0.13	+0.5
1,667,320	-		Psyr_1478	0.13	+0.6
1,667,323	+		Psyr_1478	0.13	-1.3
1,667,323	+		Psyr_1478	0.13	+0.8
1,667,329	+		Psyr_1478	0.14	-2.8
1,667,329	+		Psyr_1478	0.14	+0.2
1,667,330	-		Psyr_1478	0.14	-1.9
1,667,393	+		Psyr_1478	0.20	-0.0
1,667,393	+		Psyr_1478	0.20	-0.9
1,667,393	+		Psyr_1478	0.20	-0.4
1,667,393	+		Psyr_1478	0.20	+1.6
1,667,393	+		Psyr_1478	0.20	+0.1
1,667,393	+		Psyr_1478	0.20	+1.1
1,667,393	+		Psyr_1478	0.20	-0.1
1,667,393	+		Psyr_1478	0.20	+0.1
1,667,393	+		Psyr_1478	0.20	-0.0
1,667,393	+		Psyr_1478	0.20	+1.1
1,667,393	+		Psyr_1478	0.20	-0.6
1,667,393	+		Psyr_1478	0.20	-1.0
1,667,393	+		Psyr_1478	0.20	+0.6
1,667,393	+		Psyr_1478	0.20	-0.4
1,667,393	+		Psyr_1478	0.20	+0.3
1,667,393	+		Psyr_1478	0.20	-0.1
1,667,394	-		Psyr_1478	0.20	+0.1
1,667,394	-		Psyr_1478	0.20	-1.7
1,667,394	-		Psyr_1478	0.20	+0.0
1,667,394	-		Psyr_1478	0.20	+1.5
1,667,394	-		Psyr_1478	0.20	-1.2
1,667,394	-		Psyr_1478	0.20	-0.6
1,667,394	-		Psyr_1478	0.20	-0.6
1,667,394	-		Psyr_1478	0.20	-0.4
1,667,394	-		Psyr_1478	0.20	+1.7
1,667,394	-		Psyr_1478	0.20	-1.7
1,667,394	-		Psyr_1478	0.20	-2.2
1,667,394	-		Psyr_1478	0.20	-0.3
1,667,394	-		Psyr_1478	0.20	-1.1
1,667,394	-		Psyr_1478	0.20	-1.1
1,667,394	-		Psyr_1478	0.20	-0.2
1,667,394	-		Psyr_1478	0.20	+1.2
1,667,479	+		Psyr_1478	0.28	+0.0
1,667,480	-		Psyr_1478	0.28	+0.3
1,667,480	-		Psyr_1478	0.28	-1.9
1,667,480	-		Psyr_1478	0.28	-0.0
1,667,647	+		Psyr_1478	0.44	-0.4
1,667,693	-		Psyr_1478	0.49	-0.9
1,667,740	+		Psyr_1478	0.53	+0.7
1,667,797	-		Psyr_1478	0.59	+0.2
1,667,884	+		Psyr_1478	0.67	+0.1
1,667,884	+		Psyr_1478	0.67	-0.1
1,667,884	+		Psyr_1478	0.67	-0.2
1,667,884	+		Psyr_1478	0.67	-0.9
1,667,885	-		Psyr_1478	0.67	-0.4
1,667,885	-		Psyr_1478	0.67	-0.1
1,667,885	-		Psyr_1478	0.67	+0.2
1,667,885	-		Psyr_1478	0.67	-0.2
1,667,885	-		Psyr_1478	0.67	+0.7
1,667,885	-		Psyr_1478	0.67	+1.6
1,667,885	-		Psyr_1478	0.67	+0.6
1,667,885	-		Psyr_1478	0.67	-1.8
1,667,912	+		Psyr_1478	0.70	-1.3
1,667,912	+		Psyr_1478	0.70	+0.4
1,667,912	+		Psyr_1478	0.70	+1.4
1,667,912	+		Psyr_1478	0.70	+0.2
1,667,912	+		Psyr_1478	0.70	-1.4
1,667,912	+		Psyr_1478	0.70	-2.8
1,667,912	+		Psyr_1478	0.70	-0.4
1,667,912	+		Psyr_1478	0.70	+3.5
1,667,913	-		Psyr_1478	0.70	-1.3
1,667,913	-		Psyr_1478	0.70	-1.0
1,667,913	-		Psyr_1478	0.70	+0.1
1,667,913	-		Psyr_1478	0.70	-1.1
1,667,913	-		Psyr_1478	0.70	-1.1
1,667,913	-		Psyr_1478	0.70	+1.0
1,667,913	-		Psyr_1478	0.70	+0.1
1,667,913	-		Psyr_1478	0.70	-0.6
1,667,913	-		Psyr_1478	0.70	+0.1
1,667,913	-		Psyr_1478	0.70	-1.2
1,667,913	-		Psyr_1478	0.70	+0.6
1,667,913	-		Psyr_1478	0.70	-0.4
1,667,928	+		Psyr_1478	0.71	-0.3
1,667,929	-		Psyr_1478	0.71	-0.4
1,667,989	+		Psyr_1478	0.77	-0.2
1,667,989	+		Psyr_1478	0.77	-1.6
1,667,990	-		Psyr_1478	0.77	-1.0
1,667,990	-		Psyr_1478	0.77	-0.9
1,667,990	-		Psyr_1478	0.77	-0.2
1,668,058	+		Psyr_1478	0.84	-0.3
1,668,058	+		Psyr_1478	0.84	-0.4
1,668,214	+				+0.7
1,668,220	+				+0.1
1,668,220	+				-0.9
1,668,220	+				-1.2
1,668,220	+				-1.4
1,668,220	+				-2.6
1,668,221	-				-0.4
1,668,230	+				-1.9
1,668,230	+				-0.8
1,668,230	+				+0.6
1,668,231	-				-1.2
1,668,231	-				+0.1
1,668,235	+				+0.6
1,668,235	+				-0.3
1,668,235	+				+0.4
1,668,236	-				-0.2
1,668,245	-				-0.6
1,668,246	+				-1.1
1,668,246	+				+1.1
1,668,246	+				+0.5
1,668,247	-				-1.2
1,668,247	-				+0.9
1,668,253	+				-2.0
1,668,254	-				-0.3
1,668,254	-				+0.5
1,668,255	+				+1.4
1,668,255	+				-0.6
1,668,256	-				-1.2
1,668,256	-				-0.5
1,668,256	-				-0.4
1,668,256	-				-0.4
1,668,261	+				-0.1
1,668,261	+				+0.9
1,668,261	+				-0.7
1,668,261	+				+0.6
1,668,262	-				-0.2
1,668,262	-				+0.8
1,668,262	-				+0.7
1,668,263	+				+0.1
1,668,263	+				+1.1
1,668,263	+				+0.1
1,668,264	-				-1.4
1,668,264	-				-0.1
1,668,264	-				+0.2
1,668,267	-				-2.2
1,668,296	+				-1.2
1,668,296	+				-0.4
1,668,296	+				-1.7
1,668,296	+				-1.3
1,668,296	+				-0.1
1,668,297	-				+0.6
1,668,297	-				+0.4
1,668,297	-				-1.0
1,668,298	+				+0.9
1,668,298	+				+0.1
1,668,298	+				+0.4
1,668,299	-				+0.9
1,668,299	-				+0.5
1,668,299	-				-0.3
1,668,299	-				+1.4
1,668,315	-				-2.3
1,668,369	+				+1.5
1,668,369	+				+0.0
1,668,369	+				+0.5
1,668,369	+				+0.7
1,668,369	+				-0.4
1,668,369	+				+0.3
1,668,369	+				+0.9
1,668,369	+				+0.4
1,668,369	+				-0.9
1,668,369	+				-1.2
1,668,369	+				-0.6
1,668,369	+				-0.3
1,668,370	-				-0.3
1,668,370	-				+0.6
1,668,370	-				+0.3
1,668,370	-				-1.4
1,668,370	-				-2.7
1,668,371	+				+1.3
1,668,372	-				+0.3
1,668,547	-		Psyr_1479	0.17	-0.7
1,668,549	+		Psyr_1479	0.17	+0.0
1,668,570	+		Psyr_1479	0.19	+1.2
1,668,580	+		Psyr_1479	0.20	+0.5
1,668,580	+		Psyr_1479	0.20	+0.5
1,668,580	+		Psyr_1479	0.20	+0.6
1,668,580	+		Psyr_1479	0.20	+1.3
1,668,581	-		Psyr_1479	0.20	+0.0
1,668,642	-		Psyr_1479	0.25	-1.1
1,668,642	-		Psyr_1479	0.25	+0.6
1,668,660	+		Psyr_1479	0.27	+0.1
1,668,660	+		Psyr_1479	0.27	-0.4
1,668,661	-		Psyr_1479	0.27	+0.0
1,668,661	-		Psyr_1479	0.27	+1.1
1,668,661	-		Psyr_1479	0.27	-0.9
1,668,661	-		Psyr_1479	0.27	-1.7
1,668,802	+		Psyr_1479	0.39	-0.3
1,668,802	+		Psyr_1479	0.39	+0.0
1,668,802	+		Psyr_1479	0.39	+0.7
1,668,803	-		Psyr_1479	0.39	+0.6
1,668,803	-		Psyr_1479	0.39	-1.0
1,668,804	+		Psyr_1479	0.39	+1.9
1,668,804	+		Psyr_1479	0.39	+0.4
1,668,804	+		Psyr_1479	0.39	-0.4
1,668,804	+		Psyr_1479	0.39	-2.3
1,668,804	+		Psyr_1479	0.39	+0.7
1,668,805	-		Psyr_1479	0.39	-0.1
1,668,805	-		Psyr_1479	0.39	+0.6
1,668,805	-		Psyr_1479	0.39	-0.7
1,668,805	-		Psyr_1479	0.39	+1.1
1,668,805	-		Psyr_1479	0.39	-0.9
1,668,866	+		Psyr_1479	0.44	-1.1
1,668,958	+		Psyr_1479	0.52	+0.2
1,668,958	+		Psyr_1479	0.52	+0.1
1,668,958	+		Psyr_1479	0.52	-0.3
1,668,958	+		Psyr_1479	0.52	-0.6
1,668,958	+		Psyr_1479	0.52	+0.2
1,668,958	+		Psyr_1479	0.52	+0.4
1,668,958	+		Psyr_1479	0.52	+0.5
1,668,959	-		Psyr_1479	0.52	-0.8
1,668,959	-		Psyr_1479	0.52	+0.7
1,668,959	-		Psyr_1479	0.52	+0.3
1,668,959	-		Psyr_1479	0.52	+0.6
1,668,959	-		Psyr_1479	0.52	+0.6
1,668,959	-		Psyr_1479	0.52	+0.1
1,668,959	-		Psyr_1479	0.52	-0.6
1,668,959	-		Psyr_1479	0.52	+0.5
1,668,998	+		Psyr_1479	0.56	-0.4
1,668,998	+		Psyr_1479	0.56	+1.9
1,669,013	+		Psyr_1479	0.57	+1.0
1,669,013	+		Psyr_1479	0.57	-0.4
1,669,014	-		Psyr_1479	0.57	-0.3
1,669,037	+		Psyr_1479	0.59	-0.7
1,669,037	+		Psyr_1479	0.59	-0.3
1,669,037	+		Psyr_1479	0.59	-0.7
1,669,037	+				+0.1
1,669,037	+		Psyr_1479	0.59	+1.1
1,669,037	+		Psyr_1479	0.59	-0.9
1,669,037	+		Psyr_1479	0.59	+1.6
1,669,038	-		Psyr_1479	0.59	-1.4
1,669,038	-		Psyr_1479	0.59	-0.1
1,669,038	-		Psyr_1479	0.59	-0.6
1,669,038	-		Psyr_1479	0.59	-0.9
1,669,038	-		Psyr_1479	0.59	-0.6
1,669,076	+		Psyr_1479	0.62	-1.2