Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003029

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
3,426,065	+				+0.4
3,426,065	+				+1.0
3,426,090	+				-1.4
3,426,093	+				+1.1
3,426,093	+				-0.3
3,426,093	+				-0.0
3,426,093	+				-0.2
3,426,093	+				+0.6
3,426,093	+				+2.0
3,426,101	+				-1.7
3,426,101	+				+0.9
3,426,722	-		ABIE53_003028	0.17	+1.8
3,426,845	+		ABIE53_003028	0.83	-0.6
3,426,845	+		ABIE53_003028	0.83	-2.8
3,426,845	+		ABIE53_003028	0.83	-1.9
3,426,845	+		ABIE53_003028	0.83	+0.1
3,426,845	+		ABIE53_003028	0.83	+1.8
3,426,845	+		ABIE53_003028	0.83	+0.4
3,426,845	+		ABIE53_003028	0.83	-1.4
3,426,845	+		ABIE53_003028	0.83	-1.6
3,426,845	+		ABIE53_003028	0.83	+1.6
3,426,845	+		ABIE53_003028	0.83	-1.3
3,426,846	-		ABIE53_003028	0.84	+0.6
3,426,846	-		ABIE53_003028	0.84	+0.9
3,426,846	-		ABIE53_003028	0.84	-0.3
3,426,846	-		ABIE53_003028	0.84	-0.0
3,426,846	-		ABIE53_003028	0.84	-1.0
3,426,846	-		ABIE53_003028	0.84	+1.2
3,426,846	-		ABIE53_003028	0.84	+0.1
3,426,846	-		ABIE53_003028	0.84	+0.7
3,426,846	-		ABIE53_003028	0.84	+1.0
3,426,846	-		ABIE53_003028	0.84	-0.6
3,426,846	-		ABIE53_003028	0.84	-0.0
3,426,846	-		ABIE53_003028	0.84	+0.2
3,426,846	-		ABIE53_003028	0.84	-0.5
3,426,846	-		ABIE53_003028	0.84	+0.4
3,426,846	-		ABIE53_003028	0.84	+0.4
3,426,858	+				-0.2
3,426,859	-				+2.1
3,426,859	-				+1.0
3,426,891	+				-0.3
3,426,891	+				+0.2
3,426,891	+				+0.5
3,426,902	+				+0.2
3,426,902	+				-3.5
3,426,902	+				-1.6
3,426,902	+				-0.1
3,426,902	+				-0.0
3,426,902	+				-1.2
3,426,902	+				-0.8
3,426,902	+				+3.2
3,426,902	+				-0.5
3,426,902	+				-0.2
3,426,902	+				+0.7
3,426,902	+				+0.3
3,426,902	+				+0.4
3,426,902	+				+0.2
3,426,902	+				-1.1
3,426,902	+				+1.0
3,426,902	+				-0.3
3,426,902	+				-0.2
3,426,902	+				+2.0
3,426,902	+				-0.5
3,426,902	+				-0.2
3,426,902	+				+1.0
3,426,902	+				-0.6
3,426,902	+				+0.3
3,426,902	+				-1.1
3,426,902	+				+0.4
3,426,902	+				+0.4
3,426,902	+				-0.6
3,426,902	+				-0.1
3,426,902	+				-0.8
3,426,902	+				+1.8
3,426,902	+				+0.3
3,426,903	-				+0.6
3,426,903	-				-1.2
3,426,903	-				+2.2
3,426,903	-				+1.5
3,426,903	-				+3.4
3,426,903	-				+0.4
3,426,903	-				+5.1
3,426,903	-				+1.0
3,426,903	-				+1.6
3,426,903	-				+1.0
3,426,903	-				+2.2
3,426,903	-				+1.5
3,426,903	-				-0.6
3,426,903	-				+0.4
3,426,903	-				+1.3
3,426,903	-				-0.6
3,426,903	-				+0.4
3,426,903	-				+2.0
3,426,903	-				+4.3
3,426,903	-				+4.8
3,426,903	-				+3.1
3,426,907	+				-1.7
3,426,907	+				-0.8
3,426,907	+				-1.4
3,426,907	+				-1.2
3,426,908	-				-0.0
3,426,908	-				+2.9
3,426,908	-				+1.5
3,426,908	-				+2.8
3,426,908	-				-1.8
3,426,908	-				+1.2
3,427,070	+		ABIE53_003029	0.67	+3.0
3,427,071	-		ABIE53_003029	0.67	+1.5
3,427,071	-		ABIE53_003029	0.67	-1.4
3,427,153	+				-0.5
3,427,153	+				+0.1
3,427,153	+				-2.4
3,427,153	+				-1.7
3,427,153	+				+0.3
3,427,153	+				+0.3
3,427,153	+				+1.0
3,427,153	+				+2.8
3,427,153	+				+0.7
3,427,153	+				+0.4
3,427,154	-				+2.2
3,427,154	-				+1.2
3,427,154	-				+1.1
3,427,154	-				+1.7
3,427,154	-				+1.3
3,427,154	-				+2.8
3,427,157	+				-2.2
3,427,157	+				-1.4
3,427,259	+				+2.0
3,427,259	+				-0.4
3,427,259	+				+1.0
3,427,260	-				+1.7
3,427,260	-				+1.0
3,427,260	-				-0.1
3,427,260	-				+1.2
3,427,260	-				+0.2
3,427,260	-				+3.3
3,427,260	-				+1.9
3,427,278	+				-1.8
3,427,278	+				+0.1
3,427,279	-				+0.7
3,427,279	-				-1.5
3,427,279	-				+2.2
3,427,279	-				+0.8
3,427,359	+				-1.1
3,427,409	+				-2.8
3,427,409	+				-2.2
3,427,464	+				+1.0
3,427,477	+				+0.3
3,427,530	+				+1.8
3,427,530	+				+1.0
3,427,530	+				-0.0
3,427,531	-				+1.5
3,427,795	+		ABIE53_003030	0.22	+2.0
3,427,795	+		ABIE53_003030	0.22	-1.0
3,427,795	+		ABIE53_003030	0.22	+0.4
3,427,795	+		ABIE53_003030	0.22	-0.0
3,427,795	+		ABIE53_003030	0.22	-0.5
3,427,795	+		ABIE53_003030	0.22	+1.7
3,427,796	-		ABIE53_003030	0.22	+1.2
3,427,796	-		ABIE53_003030	0.22	+1.3
3,427,796	-		ABIE53_003030	0.22	+2.0
3,427,858	+		ABIE53_003030	0.26	-1.0
3,427,858	+		ABIE53_003030	0.26	+4.0
3,427,858	+		ABIE53_003030	0.26	-0.0
3,427,858	+		ABIE53_003030	0.26	-1.0
3,427,858	+		ABIE53_003030	0.26	+0.9
3,427,859	-		ABIE53_003030	0.26	+1.6
3,427,890	+		ABIE53_003030	0.29	+2.8
3,427,890	+		ABIE53_003030	0.29	+3.2
3,427,890	+		ABIE53_003030	0.29	+1.6
3,427,890	+		ABIE53_003030	0.29	+1.1
3,427,890	+		ABIE53_003030	0.29	+2.3
3,427,890	+		ABIE53_003030	0.29	+2.5
3,427,890	+		ABIE53_003030	0.29	+2.6
3,427,890	+		ABIE53_003030	0.29	-1.7
3,427,890	+		ABIE53_003030	0.29	+1.8
3,427,890	+		ABIE53_003030	0.29	+1.2
3,427,890	+		ABIE53_003030	0.29	-0.8
3,427,891	-		ABIE53_003030	0.29	+1.0
3,427,891	-		ABIE53_003030	0.29	-0.2
3,427,891	-		ABIE53_003030	0.29	+1.3
3,427,891	-		ABIE53_003030	0.29	+2.2
3,427,891	-		ABIE53_003030	0.29	+1.4
3,427,891	-		ABIE53_003030	0.29	-1.0
3,427,891	-		ABIE53_003030	0.29	-0.6
3,427,891	-		ABIE53_003030	0.29	-1.2
3,427,891	-		ABIE53_003030	0.29	+2.7
3,427,891	-		ABIE53_003030	0.29	-1.1
3,427,957	+		ABIE53_003030	0.33	-0.4
3,427,957	+		ABIE53_003030	0.33	+1.8
3,427,957	+		ABIE53_003030	0.33	+1.8
3,427,957	+		ABIE53_003030	0.33	+1.7
3,427,958	-		ABIE53_003030	0.33	+1.4
3,427,958	-		ABIE53_003030	0.33	+4.8
3,427,958	-		ABIE53_003030	0.33	+1.9
3,427,958	-		ABIE53_003030	0.33	+0.7
3,427,958	-		ABIE53_003030	0.33	+3.5
3,427,974	+		ABIE53_003030	0.35	-0.6
3,427,974	+		ABIE53_003030	0.35	+0.4
3,427,974	+		ABIE53_003030	0.35	+0.4
3,427,974	+		ABIE53_003030	0.35	+2.0
3,427,974	+		ABIE53_003030	0.35	+1.1
3,427,974	+		ABIE53_003030	0.35	+2.1
3,427,975	-		ABIE53_003030	0.35	+2.8
3,427,975	-		ABIE53_003030	0.35	+1.4
3,427,975	-		ABIE53_003030	0.35	+0.8
3,427,975	-		ABIE53_003030	0.35	+1.0