Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003023

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
3,419,016	+		ABIE53_003022	0.30	+0.4
3,419,016	+		ABIE53_003022	0.30	-0.7
3,419,016	+		ABIE53_003022	0.30	-0.9
3,419,016	+		ABIE53_003022	0.30	+0.2
3,419,016	+		ABIE53_003022	0.30	-0.2
3,419,016	+		ABIE53_003022	0.30	+2.0
3,419,016	+		ABIE53_003022	0.30	-0.1
3,419,017	-		ABIE53_003022	0.30	-1.0
3,419,017	-		ABIE53_003022	0.30	+0.3
3,419,017	-		ABIE53_003022	0.30	+0.3
3,419,180	+		ABIE53_003022	0.47	+1.4
3,419,181	-		ABIE53_003022	0.47	+1.2
3,419,313	+		ABIE53_003022	0.61	+0.4
3,419,313	+		ABIE53_003022	0.61	+0.6
3,419,313	+		ABIE53_003022	0.61	+5.2
3,419,313	+		ABIE53_003022	0.61	-2.6
3,419,313	+		ABIE53_003022	0.61	-1.7
3,419,313	+		ABIE53_003022	0.61	-0.6
3,419,314	-		ABIE53_003022	0.61	-0.4
3,419,314	-		ABIE53_003022	0.61	+1.0
3,419,314	-		ABIE53_003022	0.61	-1.5
3,419,314	-		ABIE53_003022	0.61	+1.6
3,419,314	-		ABIE53_003022	0.61	+1.0
3,419,314	-		ABIE53_003022	0.61	-3.3
3,419,314	-		ABIE53_003022	0.61	-0.2
3,419,314	-		ABIE53_003022	0.61	+0.4
3,419,314	-		ABIE53_003022	0.61	-0.4
3,419,314	-		ABIE53_003022	0.61	-1.2
3,419,362	+		ABIE53_003022	0.66	+1.0
3,419,362	+		ABIE53_003022	0.66	-1.4
3,419,362	+		ABIE53_003022	0.66	+0.8
3,419,362	+		ABIE53_003022	0.66	-0.9
3,419,362	+		ABIE53_003022	0.66	-0.0
3,419,362	+		ABIE53_003022	0.66	-1.6
3,419,362	+		ABIE53_003022	0.66	-2.0
3,419,362	+		ABIE53_003022	0.66	-1.5
3,419,363	-		ABIE53_003022	0.66	+1.0
3,419,363	-		ABIE53_003022	0.66	+0.4
3,419,363	-		ABIE53_003022	0.66	+1.1
3,419,372	+		ABIE53_003022	0.67	+0.4
3,419,513	+		ABIE53_003022	0.81	+2.0
3,419,513	+		ABIE53_003022	0.81	-0.9
3,419,514	-		ABIE53_003022	0.81	+0.4
3,419,636	+				+0.7
3,419,636	+				-3.0
3,419,636	+				+0.1
3,419,636	+				-1.6
3,419,636	+				+1.0
3,419,636	+				-1.0
3,419,636	+				-0.0
3,419,636	+				-0.9
3,419,636	+				-0.9
3,419,636	+				+2.0
3,419,637	-				-0.2
3,419,693	+				+3.5
3,419,693	+				-2.2
3,419,693	+				-1.8
3,419,693	+				+1.0
3,419,693	+				+0.7
3,419,693	+				+0.5
3,419,693	+				+3.0
3,419,693	+				-0.3
3,419,693	+				+0.1
3,419,693	+				-1.0
3,419,693	+				-0.4
3,419,693	+				-0.9
3,419,693	+				+0.4
3,419,693	+				+0.7
3,419,693	+				-0.7
3,419,693	+				-3.0
3,419,693	+				+1.5
3,419,693	+				+1.0
3,419,693	+				-0.0
3,419,693	+				-0.4
3,419,693	+				+1.0
3,419,693	+				-1.1
3,419,693	+				-1.5
3,419,693	+				+0.8
3,419,693	+				-1.0
3,419,693	+				-2.0
3,419,693	+				+0.1
3,419,693	+				-0.8
3,419,693	+				+1.0
3,419,693	+				-0.1
3,419,693	+				+2.7
3,419,693	+				-2.7
3,419,694	-				+0.1
3,419,694	-				+0.1
3,419,694	-				-2.4
3,419,694	-				-1.0
3,419,694	-				-0.2
3,419,694	-				-2.0
3,419,694	-				+1.1
3,419,694	-				-0.6
3,419,694	-				-0.1
3,419,694	-				-2.6
3,419,694	-				+0.6
3,419,694	-				-1.4
3,419,694	-				+1.5
3,419,694	-				+0.8
3,419,694	-				-1.4
3,419,694	-				-0.6
3,419,694	-				+0.9
3,419,694	-				-0.6
3,419,694	-				+0.4
3,419,694	-				-0.9
3,419,694	-				-0.4
3,419,694	-				-0.7
3,419,694	-				+0.0
3,419,694	-				-0.6
3,419,694	-				-1.2
3,419,694	-				+0.4
3,419,694	-				+0.8
3,419,694	-				-0.2
3,419,694	-				+0.4
3,419,694	-				+0.4
3,419,694	-				-1.0
3,419,694	-				+1.2
3,419,694	-				-0.6
3,419,694	-				-0.4
3,419,694	-				+0.0
3,419,694	-				+0.5
3,419,694	-				-1.2
3,419,694	-				-1.4
3,419,694	-				-1.5
3,419,694	-				+1.0
3,419,694	-				-1.5
3,419,694	-				+0.3
3,419,694	-				+0.3
3,419,874	+				-2.0
3,419,874	+				-0.4
3,419,875	-				-1.5
3,419,875	-				-0.0
3,419,887	+				+1.0
3,419,887	+				-1.5
3,419,888	-				-3.6
3,419,901	+				-1.5
3,419,901	+				-0.4
3,419,901	+				-0.0
3,419,901	+				+2.2
3,419,901	+				+3.5
3,419,902	-				+0.6
3,419,902	-				-2.2
3,419,902	-				-1.6
3,419,902	-				-0.0
3,419,902	-				-1.2
3,419,903	+				-2.7
3,419,903	+				+0.9
3,419,903	+				-4.1
3,419,903	+				-1.2
3,419,903	+				-1.2
3,419,903	+				-0.9
3,419,903	+				+3.0
3,419,903	+				-1.9
3,419,903	+				+2.8
3,419,903	+				+0.4
3,419,903	+				-1.4
3,419,903	+				-0.7
3,419,904	-				-1.0
3,419,904	-				+1.3
3,419,904	-				-1.9
3,419,904	-				-0.5
3,419,904	-				-1.3
3,419,904	-				-0.4
3,419,904	-				+0.0
3,419,904	-				+1.7
3,419,904	-				-0.7
3,419,904	-				-1.2
3,419,904	-				-1.5
3,419,904	-				+1.8
3,419,904	-				-1.4
3,419,904	-				-1.0
3,419,904	-				+1.0
3,419,904	-				-2.3
3,419,904	-				-1.3
3,419,904	-				-0.6
3,419,904	-				-1.0
3,419,904	-				-0.0
3,419,904	-				-0.0
3,419,904	-				+1.5
3,419,904	-				-0.6
3,419,952	+				-1.6
3,419,952	+				+0.1
3,419,952	+				+2.2
3,419,952	+				-0.9
3,419,952	+				+2.0
3,419,952	+				+1.1
3,419,952	+				-0.1
3,419,952	+				+0.6
3,419,952	+				+1.8
3,419,952	+				+1.1
3,419,952	+				+1.0
3,419,952	+				+0.0
3,419,953	-				-0.4
3,419,953	-				-3.0
3,419,953	-				-1.0
3,419,953	-				-0.2
3,419,953	-				-0.3
3,419,953	-				+2.0
3,419,953	-				-1.5
3,419,953	-				-1.2
3,419,953	-				+0.2
3,419,953	-				+0.7
3,419,953	-				-2.3
3,419,953	-				-0.0
3,419,953	-				-1.4
3,419,953	-				-0.6
3,420,259	+		ABIE53_003023	0.49	+0.6
3,420,259	+		ABIE53_003023	0.49	-2.1
3,420,544	+		ABIE53_003023	0.87	-0.9
3,420,544	+		ABIE53_003023	0.87	-0.0
3,420,544	+		ABIE53_003023	0.87	+0.0
3,420,544	+		ABIE53_003023	0.87	-0.4
3,420,544	+		ABIE53_003023	0.87	-1.7
3,420,544	+		ABIE53_003023	0.87	-2.3
3,420,544	+		ABIE53_003023	0.87	-1.6
3,420,544	+		ABIE53_003023	0.87	+0.5
3,420,545	-		ABIE53_003023	0.87	-1.1
3,420,545	-		ABIE53_003023	0.87	-0.4
3,420,545	-		ABIE53_003023	0.87	-1.4
3,420,545	-		ABIE53_003023	0.87	-0.4
3,420,545	-		ABIE53_003023	0.87	-2.7
3,420,545	-		ABIE53_003023	0.87	-1.0
3,420,545	-		ABIE53_003023	0.87	+0.0
3,420,545	-		ABIE53_003023	0.87	-0.3
3,420,545	-		ABIE53_003023	0.87	+0.4
3,420,545	-		ABIE53_003023	0.87	+1.3
3,420,636	+				+2.4
3,420,636	+				-1.0
3,420,636	+				+0.1
3,420,636	+				+0.6
3,420,636	+				+1.0
3,420,636	+				+1.0
3,420,636	+				-0.5
3,420,636	+				+0.9
3,420,636	+				-0.5
3,420,636	+				+0.0
3,420,636	+				+0.5
3,420,636	+				+0.2
3,420,636	+				-0.8
3,420,636	+				+2.0
3,420,636	+				-0.9
3,420,636	+				+0.4
3,420,636	+				+0.1
3,420,636	+				-1.9
3,420,636	+				+0.4
3,420,636	+				-2.0
3,420,636	+				-0.4
3,420,637	-				-0.7
3,420,637	-				-0.0
3,420,637	-				+2.3
3,420,637	-				-0.6
3,420,637	-				-0.0
3,420,637	-				+0.7
3,420,637	-				+0.4
3,420,637	-				-1.1
3,420,637	-				+0.5
3,420,637	-				-1.0
3,420,637	-				+0.5
3,420,637	-				-1.7
3,420,637	-				-1.4
3,420,637	-				+0.3
3,420,637	-				-1.5
3,420,637	-				-1.5
3,420,637	-				+0.2
3,420,637	-				+0.5
3,420,640	+				-0.2
3,420,640	+				+0.4
3,420,640	+				+0.4
3,420,640	+				-0.0
3,420,640	+				-0.2
3,420,640	+				-0.4
3,420,640	+				-1.0
3,420,640	+				+1.4
3,420,640	+				-0.4
3,420,640	+				+0.1
3,420,640	+				-0.4
3,420,640	+				-2.1
3,420,640	+				-2.7
3,420,640	+				-0.6
3,420,640	+				-3.7
3,420,640	+				-0.4
3,420,640	+				-1.4
3,420,640	+				-2.2
3,420,640	+				-1.5
3,420,640	+				+2.0
3,420,641	-				+0.3
3,420,641	-				-0.6
3,420,641	-				-0.5
3,420,641	-				-0.4
3,420,641	-				-0.3
3,420,641	-				+1.2
3,420,641	-				-0.1
3,420,641	-				+0.7
3,420,641	-				+1.0
3,420,641	-				-0.7
3,420,641	-				+0.4
3,420,641	-				-1.0
3,420,641	-				-0.9
3,420,641	-				+0.2
3,420,641	-				-2.2
3,420,641	-				-1.0
3,420,641	-				+2.2
3,420,641	-				-0.8
3,420,703	-				-1.5
3,420,801	+				+1.8
3,420,801	+				+0.4
3,420,801	+				-1.0
3,420,802	-				+3.5
3,420,802	-				+1.7
3,420,802	-				-3.0
3,420,802	-				+0.4
3,420,802	-				-1.9
3,420,802	-				-0.0
3,420,802	-				-1.1
3,420,802	-				-1.0
3,420,802	-				-2.9
3,420,896	-				+1.6
3,420,896	-				-0.9
3,420,896	-				+0.7
3,420,976	-				-0.9
3,420,976	-				-0.5
3,420,976	-				-0.6
3,420,976	-				-0.4
3,420,976	-				+4.0
3,420,976	-				-0.3
3,420,976	-				-0.1
3,420,976	-				-1.0
3,420,976	-				+2.9
3,420,976	-				-0.0
3,420,976	-				+0.4
3,420,976	-				-0.6
3,420,976	-				-1.1
3,420,976	-				+1.5
3,420,976	-				-1.7
3,420,976	-				-1.4
3,420,976	-				+1.6
3,420,976	-				-2.0
3,420,976	-				+2.4
3,421,033	-		ABIE53_003843	0.74	-1.0
3,421,033	-		ABIE53_003843	0.74	-3.1
3,421,084	-				+0.5
3,421,084	-				-0.8
3,421,084	-				-1.4
3,421,084	-				+1.0
3,421,084	-				-0.6
3,421,084	-				-1.2
3,421,084	-				+0.0
3,421,084	-				-0.0
3,421,084	-				-1.4
3,421,098	-				+0.6
3,421,098	-				-1.0
3,421,098	-				+1.0
3,421,098	-				-1.5
3,421,112	-				-1.1
3,421,112	-				-0.9
3,421,212	-				-0.4
3,421,223	-				-2.2
3,421,223	-				-0.2
3,421,233	-				-0.4
3,421,233	-				-1.7
3,421,233	-				-0.3
3,421,233	-				-2.9
3,421,236	-				-1.0
3,421,236	-				-2.3
3,421,236	-				-2.0
3,421,236	-				-2.4
3,421,236	-				+0.5
3,421,243	-				+0.3
3,421,333	+				+0.4
3,421,334	-				-0.5