Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4222

Experiment: KB with Gamma-Aminobutyric Acid Hydrochloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4221 and Psyr_4222 are separated by 91 nucleotidesPsyr_4222 and Psyr_4223 are separated by 220 nucleotides Psyr_4221: Psyr_4221 - diguanylate cyclase/phosphodiesterase, at 5,027,082 to 5,028,905 _4221 Psyr_4222: Psyr_4222 - Protein of unknown function DUF81, at 5,028,997 to 5,029,782 _4222 Psyr_4223: Psyr_4223 - conserved hypothetical protein, at 5,030,003 to 5,030,203 _4223 Position (kb) 5028 5029 5030Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5028.048 kb on + strand, within Psyr_4221at 5028.048 kb on + strand, within Psyr_4221at 5028.048 kb on + strand, within Psyr_4221at 5028.048 kb on + strand, within Psyr_4221at 5028.048 kb on + strand, within Psyr_4221at 5028.048 kb on + strand, within Psyr_4221at 5028.049 kb on - strand, within Psyr_4221at 5028.049 kb on - strand, within Psyr_4221at 5028.049 kb on - strand, within Psyr_4221at 5028.049 kb on - strand, within Psyr_4221at 5028.117 kb on + strand, within Psyr_4221at 5028.117 kb on + strand, within Psyr_4221at 5028.118 kb on - strand, within Psyr_4221at 5028.118 kb on - strand, within Psyr_4221at 5028.118 kb on - strand, within Psyr_4221at 5028.118 kb on - strand, within Psyr_4221at 5028.179 kb on + strand, within Psyr_4221at 5028.179 kb on + strand, within Psyr_4221at 5028.180 kb on - strand, within Psyr_4221at 5028.436 kb on + strand, within Psyr_4221at 5028.436 kb on + strand, within Psyr_4221at 5028.437 kb on - strand, within Psyr_4221at 5028.437 kb on - strand, within Psyr_4221at 5028.437 kb on - strand, within Psyr_4221at 5028.582 kb on + strand, within Psyr_4221at 5028.582 kb on + strand, within Psyr_4221at 5028.582 kb on + strand, within Psyr_4221at 5028.583 kb on - strand, within Psyr_4221at 5028.583 kb on - strand, within Psyr_4221at 5028.583 kb on - strand, within Psyr_4221at 5028.706 kb on - strand, within Psyr_4221at 5028.787 kb on - strandat 5028.787 kb on - strandat 5028.903 kb on + strandat 5028.903 kb on + strandat 5028.904 kb on - strandat 5028.909 kb on + strandat 5028.909 kb on + strandat 5028.910 kb on - strandat 5028.910 kb on - strandat 5028.910 kb on - strandat 5028.910 kb on - strandat 5028.971 kb on - strandat 5029.037 kb on + strandat 5029.056 kb on + strandat 5029.094 kb on + strand, within Psyr_4222at 5029.147 kb on + strand, within Psyr_4222at 5029.147 kb on + strand, within Psyr_4222at 5029.147 kb on + strand, within Psyr_4222at 5029.408 kb on + strand, within Psyr_4222at 5029.593 kb on + strand, within Psyr_4222at 5029.594 kb on - strand, within Psyr_4222at 5029.684 kb on + strand, within Psyr_4222at 5029.684 kb on + strand, within Psyr_4222at 5029.684 kb on + strand, within Psyr_4222at 5029.685 kb on - strand, within Psyr_4222at 5029.685 kb on - strand, within Psyr_4222at 5029.685 kb on - strand, within Psyr_4222at 5029.685 kb on - strand, within Psyr_4222at 5029.699 kb on - strand, within Psyr_4222at 5029.746 kb on + strandat 5029.746 kb on + strandat 5029.976 kb on + strandat 5029.976 kb on + strandat 5029.976 kb on + strandat 5029.977 kb on - strandat 5029.977 kb on - strandat 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.028 kb on + strand, within Psyr_4223at 5030.029 kb on - strand, within Psyr_4223at 5030.029 kb on - strand, within Psyr_4223at 5030.029 kb on - strand, within Psyr_4223at 5030.029 kb on - strand, within Psyr_4223at 5030.029 kb on - strand, within Psyr_4223at 5030.029 kb on - strand, within Psyr_4223at 5030.029 kb on - strand, within Psyr_4223at 5030.029 kb on - strand, within Psyr_4223at 5030.029 kb on - strand, within Psyr_4223at 5030.029 kb on - strand, within Psyr_4223at 5030.029 kb on - strand, within Psyr_4223at 5030.029 kb on - strand, within Psyr_4223at 5030.029 kb on - strand, within Psyr_4223at 5030.029 kb on - strand, within Psyr_4223at 5030.029 kb on - strand, within Psyr_4223at 5030.029 kb on - strand, within Psyr_4223at 5030.029 kb on - strand, within Psyr_4223at 5030.029 kb on - strand, within Psyr_4223at 5030.029 kb on - strand, within Psyr_4223at 5030.029 kb on - strand, within Psyr_4223at 5030.029 kb on - strand, within Psyr_4223at 5030.029 kb on - strand, within Psyr_4223at 5030.030 kb on + strand, within Psyr_4223at 5030.030 kb on + strand, within Psyr_4223at 5030.031 kb on - strand, within Psyr_4223at 5030.031 kb on - strand, within Psyr_4223at 5030.049 kb on + strand, within Psyr_4223at 5030.049 kb on + strand, within Psyr_4223at 5030.050 kb on - strand, within Psyr_4223at 5030.050 kb on - strand, within Psyr_4223at 5030.050 kb on - strand, within Psyr_4223at 5030.050 kb on - strand, within Psyr_4223at 5030.050 kb on - strand, within Psyr_4223at 5030.050 kb on - strand, within Psyr_4223at 5030.050 kb on - strand, within Psyr_4223at 5030.050 kb on - strand, within Psyr_4223at 5030.050 kb on - strand, within Psyr_4223at 5030.050 kb on - strand, within Psyr_4223at 5030.052 kb on + strand, within Psyr_4223at 5030.052 kb on + strand, within Psyr_4223at 5030.185 kb on - strandat 5030.202 kb on - strandat 5030.287 kb on + strandat 5030.287 kb on + strandat 5030.287 kb on + strandat 5030.287 kb on + strandat 5030.288 kb on - strandat 5030.362 kb on - strandat 5030.509 kb on + strandat 5030.509 kb on + strandat 5030.509 kb on + strandat 5030.509 kb on + strandat 5030.509 kb on + strandat 5030.509 kb on + strandat 5030.509 kb on + strandat 5030.510 kb on - strandat 5030.624 kb on - strandat 5030.649 kb on + strandat 5030.649 kb on + strandat 5030.649 kb on + strandat 5030.650 kb on - strandat 5030.650 kb on - strandat 5030.687 kb on + strandat 5030.687 kb on + strandat 5030.687 kb on + strandat 5030.687 kb on + strandat 5030.687 kb on + strandat 5030.687 kb on + strandat 5030.687 kb on + strandat 5030.687 kb on + strandat 5030.687 kb on + strandat 5030.688 kb on - strandat 5030.688 kb on - strandat 5030.688 kb on - strandat 5030.688 kb on - strandat 5030.688 kb on - strandat 5030.688 kb on - strandat 5030.688 kb on - strandat 5030.688 kb on - strandat 5030.688 kb on - strandat 5030.688 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Gamma-Aminobutyric Acid Hydrochloride 10 mM
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5,028,048 + Psyr_4221 0.53 +1.4
5,028,048 + Psyr_4221 0.53 -0.2
5,028,048 + Psyr_4221 0.53 +0.2
5,028,048 + Psyr_4221 0.53 +0.9
5,028,048 + Psyr_4221 0.53 -0.0
5,028,048 + Psyr_4221 0.53 -1.2
5,028,049 - Psyr_4221 0.53 -0.1
5,028,049 - Psyr_4221 0.53 -0.3
5,028,049 - Psyr_4221 0.53 -0.3
5,028,049 - Psyr_4221 0.53 +0.3
5,028,117 + Psyr_4221 0.57 +0.4
5,028,117 + Psyr_4221 0.57 -0.5
5,028,118 - Psyr_4221 0.57 +0.2
5,028,118 - Psyr_4221 0.57 +1.2
5,028,118 - Psyr_4221 0.57 -0.4
5,028,118 - Psyr_4221 0.57 -0.6
5,028,179 + Psyr_4221 0.60 -0.7
5,028,179 + Psyr_4221 0.60 -0.2
5,028,180 - Psyr_4221 0.60 -0.6
5,028,436 + Psyr_4221 0.74 -0.0
5,028,436 + Psyr_4221 0.74 -0.7
5,028,437 - Psyr_4221 0.74 -0.3
5,028,437 - Psyr_4221 0.74 +0.3
5,028,437 - Psyr_4221 0.74 +2.2
5,028,582 + Psyr_4221 0.82 +0.1
5,028,582 + Psyr_4221 0.82 -0.2
5,028,582 + Psyr_4221 0.82 +0.4
5,028,583 - Psyr_4221 0.82 +1.0
5,028,583 - Psyr_4221 0.82 +0.2
5,028,583 - Psyr_4221 0.82 +0.2
5,028,706 - Psyr_4221 0.89 -0.6
5,028,787 - -0.3
5,028,787 - +0.0
5,028,903 + -2.4
5,028,903 + +0.7
5,028,904 - -0.2
5,028,909 + -0.2
5,028,909 + -0.1
5,028,910 - +0.2
5,028,910 - -0.1
5,028,910 - +0.4
5,028,910 - +0.3
5,028,971 - +2.0
5,029,037 + +0.4
5,029,056 + -0.1
5,029,094 + Psyr_4222 0.12 +0.6
5,029,147 + Psyr_4222 0.19 +1.4
5,029,147 + Psyr_4222 0.19 +0.1
5,029,147 + Psyr_4222 0.19 -0.1
5,029,408 + Psyr_4222 0.52 +0.2
5,029,593 + Psyr_4222 0.76 +1.4
5,029,594 - Psyr_4222 0.76 -0.4
5,029,684 + Psyr_4222 0.87 +0.2
5,029,684 + Psyr_4222 0.87 +0.0
5,029,684 + Psyr_4222 0.87 +0.0
5,029,685 - Psyr_4222 0.88 -0.1
5,029,685 - Psyr_4222 0.88 +0.9
5,029,685 - Psyr_4222 0.88 +3.5
5,029,685 - Psyr_4222 0.88 +1.0
5,029,699 - Psyr_4222 0.89 +1.2
5,029,746 + -0.8
5,029,746 + -1.0
5,029,976 + -0.1
5,029,976 + -0.5
5,029,976 + +0.6
5,029,977 - +2.3
5,029,977 - +0.4
5,030,028 + Psyr_4223 0.12 -0.7
5,030,028 + Psyr_4223 0.12 +0.3
5,030,028 + Psyr_4223 0.12 -0.3
5,030,028 + Psyr_4223 0.12 +0.7
5,030,028 + Psyr_4223 0.12 +0.2
5,030,028 + Psyr_4223 0.12 -0.4
5,030,028 + Psyr_4223 0.12 +0.9
5,030,028 + Psyr_4223 0.12 -0.8
5,030,028 + Psyr_4223 0.12 -0.7
5,030,028 + Psyr_4223 0.12 +0.9
5,030,028 + Psyr_4223 0.12 +0.4
5,030,028 + Psyr_4223 0.12 -0.8
5,030,028 + Psyr_4223 0.12 -0.0
5,030,028 + Psyr_4223 0.12 +0.7
5,030,028 + Psyr_4223 0.12 +0.2
5,030,028 + Psyr_4223 0.12 -0.1
5,030,028 + Psyr_4223 0.12 -1.3
5,030,028 + Psyr_4223 0.12 -1.6
5,030,028 + Psyr_4223 0.12 +1.2
5,030,028 + Psyr_4223 0.12 +1.0
5,030,028 + Psyr_4223 0.12 +0.3
5,030,028 + Psyr_4223 0.12 +2.7
5,030,028 + Psyr_4223 0.12 +0.3
5,030,028 + Psyr_4223 0.12 +0.1
5,030,028 + Psyr_4223 0.12 +0.1
5,030,028 + Psyr_4223 0.12 -0.2
5,030,028 + Psyr_4223 0.12 +0.6
5,030,028 + Psyr_4223 0.12 +0.5
5,030,028 + Psyr_4223 0.12 -0.3
5,030,028 + Psyr_4223 0.12 -0.4
5,030,028 + Psyr_4223 0.12 +0.2
5,030,028 + Psyr_4223 0.12 +0.6
5,030,028 + Psyr_4223 0.12 +0.3
5,030,028 + Psyr_4223 0.12 +0.4
5,030,029 - Psyr_4223 0.13 +0.3
5,030,029 - Psyr_4223 0.13 +0.1
5,030,029 - Psyr_4223 0.13 -0.4
5,030,029 - Psyr_4223 0.13 -1.2
5,030,029 - Psyr_4223 0.13 +0.2
5,030,029 - Psyr_4223 0.13 -0.2
5,030,029 - Psyr_4223 0.13 -0.2
5,030,029 - Psyr_4223 0.13 -0.6
5,030,029 - Psyr_4223 0.13 -0.8
5,030,029 - Psyr_4223 0.13 -2.7
5,030,029 - Psyr_4223 0.13 -1.7
5,030,029 - Psyr_4223 0.13 -0.9
5,030,029 - Psyr_4223 0.13 +0.8
5,030,029 - Psyr_4223 0.13 +0.7
5,030,029 - Psyr_4223 0.13 -0.1
5,030,029 - Psyr_4223 0.13 -0.5
5,030,029 - Psyr_4223 0.13 +0.2
5,030,029 - Psyr_4223 0.13 -0.1
5,030,029 - Psyr_4223 0.13 -0.5
5,030,029 - Psyr_4223 0.13 +0.3
5,030,029 - Psyr_4223 0.13 -0.3
5,030,029 - Psyr_4223 0.13 +0.3
5,030,030 + Psyr_4223 0.13 -1.8
5,030,030 + Psyr_4223 0.13 +0.0
5,030,031 - Psyr_4223 0.14 +0.2
5,030,031 - Psyr_4223 0.14 -1.2
5,030,049 + Psyr_4223 0.23 +0.3
5,030,049 + Psyr_4223 0.23 +0.3
5,030,050 - Psyr_4223 0.23 -0.7
5,030,050 - Psyr_4223 0.23 +0.2
5,030,050 - Psyr_4223 0.23 +0.2
5,030,050 - Psyr_4223 0.23 +0.7
5,030,050 - Psyr_4223 0.23 +0.4
5,030,050 - Psyr_4223 0.23 +0.9
5,030,050 - Psyr_4223 0.23 +0.9
5,030,050 - Psyr_4223 0.23 +0.9
5,030,050 - Psyr_4223 0.23 -0.1
5,030,050 - Psyr_4223 0.23 +3.2
5,030,052 + Psyr_4223 0.24 +0.4
5,030,052 + Psyr_4223 0.24 -0.0
5,030,185 - +0.7
5,030,202 - -0.2
5,030,287 + -1.2
5,030,287 + -0.8
5,030,287 + +0.2
5,030,287 + +0.7
5,030,288 - +0.0
5,030,362 - -1.8
5,030,509 + +0.2
5,030,509 + -0.7
5,030,509 + -0.5
5,030,509 + -0.1
5,030,509 + -0.5
5,030,509 + +3.0
5,030,509 + -1.0
5,030,510 - -0.7
5,030,624 - -0.5
5,030,649 + +1.7
5,030,649 + +0.2
5,030,649 + -0.9
5,030,650 - +0.3
5,030,650 - -0.4
5,030,687 + -1.4
5,030,687 + +0.3
5,030,687 + +0.0
5,030,687 + +0.4
5,030,687 + -0.0
5,030,687 + -1.2
5,030,687 + -0.4
5,030,687 + -1.0
5,030,687 + -0.8
5,030,688 - -0.6
5,030,688 - +0.6
5,030,688 - +0.6
5,030,688 - -0.6
5,030,688 - +1.2
5,030,688 - -0.5
5,030,688 - -1.8
5,030,688 - +0.7
5,030,688 - -0.1
5,030,688 - -0.2

Or see this region's nucleotide sequence