Experiment: KB with Gamma-Aminobutyric Acid Hydrochloride 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3622 and Psyr_3623 are separated by 27 nucleotides Psyr_3623 and Psyr_3624 are separated by 58 nucleotides Psyr_3624 and Psyr_3625 overlap by 11 nucleotides Psyr_3625 and Psyr_3626 are separated by 204 nucleotides
Psyr_3622: Psyr_3622 - 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase, at 4,306,098 to 4,307,444
_3622
Psyr_3623: Psyr_3623 - Protein of unknown function DUF1127, at 4,307,472 to 4,307,705
_3623
Psyr_3624: Psyr_3624 - transcriptional regulator, LysR family, at 4,307,764 to 4,308,654
_3624
Psyr_3625: Psyr_3625 - Protein of unknown function DUF81, at 4,308,644 to 4,309,375
_3625
Psyr_3626: Psyr_3626 - transcriptional regulator, MarR family, at 4,309,580 to 4,310,053
_3626
Position (kb) 4307
4308
4309 Strain fitness (log2 ratio) -1
0
1
2
3 at 4306.816 kb on - strand, within Psyr_3622 at 4306.832 kb on - strand, within Psyr_3622 at 4306.832 kb on - strand, within Psyr_3622 at 4306.857 kb on + strand, within Psyr_3622 at 4306.860 kb on + strand, within Psyr_3622 at 4306.861 kb on - strand, within Psyr_3622 at 4306.861 kb on - strand, within Psyr_3622 at 4307.182 kb on - strand, within Psyr_3622 at 4307.256 kb on + strand, within Psyr_3622 at 4307.256 kb on + strand, within Psyr_3622 at 4307.257 kb on - strand, within Psyr_3622 at 4307.257 kb on - strand, within Psyr_3622 at 4307.257 kb on - strand, within Psyr_3622 at 4307.674 kb on - strand, within Psyr_3623 at 4307.748 kb on - strand at 4307.798 kb on + strand at 4307.809 kb on + strand at 4308.008 kb on + strand, within Psyr_3624 at 4308.009 kb on - strand, within Psyr_3624 at 4308.115 kb on + strand, within Psyr_3624 at 4308.115 kb on + strand, within Psyr_3624 at 4308.115 kb on + strand, within Psyr_3624 at 4308.116 kb on - strand, within Psyr_3624 at 4308.116 kb on - strand, within Psyr_3624 at 4308.116 kb on - strand, within Psyr_3624 at 4308.431 kb on - strand, within Psyr_3624 at 4308.628 kb on + strand at 4308.816 kb on + strand, within Psyr_3625 at 4308.816 kb on + strand, within Psyr_3625 at 4308.816 kb on + strand, within Psyr_3625 at 4308.816 kb on + strand, within Psyr_3625 at 4308.816 kb on + strand, within Psyr_3625 at 4308.817 kb on - strand, within Psyr_3625 at 4308.817 kb on - strand, within Psyr_3625 at 4309.032 kb on + strand, within Psyr_3625 at 4309.032 kb on + strand, within Psyr_3625 at 4309.032 kb on + strand, within Psyr_3625 at 4309.032 kb on + strand, within Psyr_3625 at 4309.033 kb on - strand, within Psyr_3625 at 4309.033 kb on - strand, within Psyr_3625 at 4309.033 kb on - strand, within Psyr_3625 at 4309.033 kb on - strand, within Psyr_3625 at 4309.174 kb on + strand, within Psyr_3625 at 4309.203 kb on + strand, within Psyr_3625 at 4309.423 kb on + strand at 4309.517 kb on - strand at 4309.517 kb on - strand at 4309.543 kb on + strand at 4309.543 kb on + strand at 4309.543 kb on + strand at 4309.544 kb on - strand at 4309.544 kb on - strand at 4309.544 kb on - strand at 4309.548 kb on + strand at 4309.549 kb on - strand at 4309.579 kb on + strand at 4309.580 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Gamma-Aminobutyric Acid Hydrochloride 10 mM remove 4,306,816 - Psyr_3622 0.53 -0.2 4,306,832 - Psyr_3622 0.54 -0.1 4,306,832 - Psyr_3622 0.54 +1.1 4,306,857 + Psyr_3622 0.56 +0.4 4,306,860 + Psyr_3622 0.57 +0.1 4,306,861 - Psyr_3622 0.57 +0.4 4,306,861 - Psyr_3622 0.57 -0.2 4,307,182 - Psyr_3622 0.80 +1.1 4,307,256 + Psyr_3622 0.86 -0.3 4,307,256 + Psyr_3622 0.86 -0.9 4,307,257 - Psyr_3622 0.86 +1.1 4,307,257 - Psyr_3622 0.86 +0.7 4,307,257 - Psyr_3622 0.86 -0.7 4,307,674 - Psyr_3623 0.86 +0.0 4,307,748 - -0.3 4,307,798 + +1.1 4,307,809 + -0.0 4,308,008 + Psyr_3624 0.27 -0.9 4,308,009 - Psyr_3624 0.27 +0.9 4,308,115 + Psyr_3624 0.39 -1.5 4,308,115 + Psyr_3624 0.39 -0.9 4,308,115 + Psyr_3624 0.39 -0.6 4,308,116 - Psyr_3624 0.40 -0.4 4,308,116 - Psyr_3624 0.40 -0.1 4,308,116 - Psyr_3624 0.40 -0.5 4,308,431 - Psyr_3624 0.75 -0.4 4,308,628 + +0.5 4,308,816 + Psyr_3625 0.23 -0.5 4,308,816 + Psyr_3625 0.23 -0.9 4,308,816 + Psyr_3625 0.23 +1.1 4,308,816 + Psyr_3625 0.23 -0.5 4,308,816 + Psyr_3625 0.23 +0.6 4,308,817 - Psyr_3625 0.24 -1.3 4,308,817 - Psyr_3625 0.24 +0.5 4,309,032 + Psyr_3625 0.53 +0.4 4,309,032 + Psyr_3625 0.53 -0.5 4,309,032 + Psyr_3625 0.53 -1.6 4,309,032 + Psyr_3625 0.53 -0.1 4,309,033 - Psyr_3625 0.53 -1.0 4,309,033 - Psyr_3625 0.53 -0.6 4,309,033 - Psyr_3625 0.53 +0.3 4,309,033 - Psyr_3625 0.53 +3.1 4,309,174 + Psyr_3625 0.72 +1.9 4,309,203 + Psyr_3625 0.76 -1.2 4,309,423 + +0.1 4,309,517 - -0.9 4,309,517 - -0.2 4,309,543 + +0.5 4,309,543 + -0.3 4,309,543 + +0.9 4,309,544 - +0.5 4,309,544 - +0.7 4,309,544 - -0.7 4,309,548 + -0.4 4,309,549 - -0.7 4,309,579 + -0.3 4,309,580 - -1.0
Or see this region's nucleotide sequence