Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4040

Experiment: KB with Cyclopamine 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Cyclopamine 10 mM
4,825,214	+				+0.3
4,825,214	+				+0.4
4,825,214	+				-0.8
4,825,215	-				-0.4
4,825,215	-				-1.7
4,825,215	-				-1.3
4,825,353	-				+0.7
4,825,397	-				-0.8
4,825,478	-				-1.2
4,825,492	+				+0.4
4,825,493	-				-1.1
4,825,513	+				-1.0
4,825,513	+				+1.7
4,825,514	-				-2.2
4,825,517	-				-0.4
4,825,537	+				-0.5
4,825,557	+				-0.1
4,825,557	+				-0.2
4,825,557	+				-0.8
4,825,558	-				-1.4
4,825,558	-				-1.6
4,825,558	-				-0.1
4,825,558	-				+1.0
4,825,560	-				-0.6
4,825,603	-		Psyr_4039	0.12	-0.9
4,825,652	+		Psyr_4039	0.22	-0.2
4,825,652	+		Psyr_4039	0.22	-1.1
4,825,653	-		Psyr_4039	0.23	-0.3
4,825,653	-		Psyr_4039	0.23	+1.0
4,825,653	-		Psyr_4039	0.23	+0.3
4,825,653	-		Psyr_4039	0.23	+0.2
4,825,872	+		Psyr_4039	0.67	+0.3
4,825,872	+		Psyr_4039	0.67	-0.4
4,825,873	-		Psyr_4039	0.68	+0.1
4,825,873	-		Psyr_4039	0.68	+2.6
4,825,923	+		Psyr_4039	0.78	-0.0
4,825,944	+		Psyr_4039	0.82	-1.9
4,825,944	+		Psyr_4039	0.82	+0.4
4,825,944	+		Psyr_4039	0.82	+0.6
4,825,944	+		Psyr_4039	0.82	+0.5
4,825,945	-		Psyr_4039	0.82	-1.5
4,825,945	-		Psyr_4039	0.82	-1.1
4,826,007	-				-0.5
4,826,022	+				-0.6
4,826,022	+				-0.1
4,826,023	-				-0.7
4,826,050	+				-1.1
4,826,125	+				-0.2
4,826,125	+				-1.3
4,826,125	+				+0.1
4,826,125	+				-1.2
4,826,125	+				+1.0
4,826,125	+				-0.8
4,826,126	-				-0.6
4,826,126	-				-2.5
4,826,126	-				-0.1
4,826,126	-				+1.0
4,826,126	-				+1.6
4,826,130	-				+0.2
4,826,130	-				-0.6
4,826,130	-				-0.8
4,826,193	+		Psyr_4040	0.22	+1.0
4,826,193	+		Psyr_4040	0.22	-1.1
4,826,193	+		Psyr_4040	0.22	+0.3
4,826,194	-		Psyr_4040	0.22	-0.5
4,826,194	-		Psyr_4040	0.22	-0.1
4,826,194	-		Psyr_4040	0.22	-0.5
4,826,250	-		Psyr_4040	0.34	-1.0
4,826,250	-		Psyr_4040	0.34	-2.0
4,826,281	+		Psyr_4040	0.40	-1.5
4,826,281	+		Psyr_4040	0.40	-0.2
4,826,281	+		Psyr_4040	0.40	-0.6
4,826,286	+		Psyr_4040	0.41	-0.1
4,826,291	-		Psyr_4040	0.42	-1.7
4,826,393	+		Psyr_4040	0.62	-0.0
4,826,393	+		Psyr_4040	0.62	-0.7
4,826,394	-		Psyr_4040	0.62	-1.7
4,826,394	-		Psyr_4040	0.62	-0.4
4,826,437	+		Psyr_4040	0.71	-0.7
4,826,438	-		Psyr_4040	0.71	-0.8
4,826,443	-		Psyr_4040	0.72	-1.2
4,826,543	+				+0.6
4,826,543	+				-0.2
4,826,575	-				-1.2
4,826,646	+		Psyr_4041	0.15	+1.0
4,826,646	+		Psyr_4041	0.15	+0.4
4,826,646	+		Psyr_4041	0.15	+0.8
4,826,647	-		Psyr_4041	0.15	-0.3
4,826,647	-		Psyr_4041	0.15	+0.2
4,826,721	+		Psyr_4041	0.32	+0.4
4,826,721	+		Psyr_4041	0.32	+0.6
4,826,722	-		Psyr_4041	0.32	+0.7
4,826,724	-		Psyr_4041	0.33	-0.3
4,826,747	+		Psyr_4041	0.38	+0.2
4,826,748	-		Psyr_4041	0.38	+1.9
4,826,803	+		Psyr_4041	0.51	-0.1
4,826,851	+		Psyr_4041	0.62	-1.3
4,826,851	+		Psyr_4041	0.62	-0.0
4,826,851	+		Psyr_4041	0.62	+0.1
4,826,851	+		Psyr_4041	0.62	+0.1
4,826,851	+		Psyr_4041	0.62	-0.6
4,826,852	-		Psyr_4041	0.62	+1.0
4,826,867	-		Psyr_4041	0.66	-0.0
4,826,868	+		Psyr_4041	0.66	+0.1
4,826,868	+		Psyr_4041	0.66	+1.3
4,826,868	+		Psyr_4041	0.66	-0.6
4,826,904	-		Psyr_4041	0.74	-1.0
4,826,919	-		Psyr_4041	0.78	-0.5
4,826,979	-				-3.6
4,826,995	+				+0.4
4,826,995	+				-0.2
4,827,007	+				-0.3
4,827,008	-				-2.7
4,827,041	-				-0.6
4,827,067	+				+0.2
4,827,078	+				+0.2
4,827,107	+		Psyr_4042	0.14	+0.6
4,827,108	-		Psyr_4042	0.15	-1.0
4,827,108	-		Psyr_4042	0.15	+0.4
4,827,137	+		Psyr_4042	0.21	-1.0
4,827,137	+		Psyr_4042	0.21	+1.2
4,827,137	+		Psyr_4042	0.21	+0.3
4,827,137	+		Psyr_4042	0.21	-0.2
4,827,137	+		Psyr_4042	0.21	-0.6
4,827,137	+		Psyr_4042	0.21	+0.8
4,827,137	+		Psyr_4042	0.21	+0.1
4,827,138	-		Psyr_4042	0.21	-1.2
4,827,138	-		Psyr_4042	0.21	-0.5
4,827,138	-		Psyr_4042	0.21	+0.6
4,827,138	-		Psyr_4042	0.21	-0.7
4,827,138	-		Psyr_4042	0.21	-1.0
4,827,197	+		Psyr_4042	0.35	-0.9
4,827,199	+		Psyr_4042	0.35	+0.5
4,827,199	+		Psyr_4042	0.35	+0.6
4,827,199	+		Psyr_4042	0.35	-0.3
4,827,200	-		Psyr_4042	0.35	-1.5
4,827,203	+		Psyr_4042	0.36	+0.5
4,827,203	+		Psyr_4042	0.36	-0.4
4,827,210	+		Psyr_4042	0.38	+0.5
4,827,211	-		Psyr_4042	0.38	-1.0
4,827,250	-		Psyr_4042	0.47	-0.5
4,827,263	+		Psyr_4042	0.50	-0.5
4,827,263	+		Psyr_4042	0.50	-0.3
4,827,263	+		Psyr_4042	0.50	+0.2
4,827,263	+		Psyr_4042	0.50	-0.3
4,827,264	-		Psyr_4042	0.50	-1.8
4,827,264	-		Psyr_4042	0.50	+1.6
4,827,264	-		Psyr_4042	0.50	-0.6
4,827,266	+		Psyr_4042	0.50	-0.6
4,827,267	-		Psyr_4042	0.51	-1.3
4,827,267	-		Psyr_4042	0.51	+0.2
4,827,314	+		Psyr_4042	0.61	-1.1
4,827,366	+		Psyr_4042	0.73	-0.3
4,827,367	-		Psyr_4042	0.73	-1.0
4,827,398	+		Psyr_4042	0.80	+0.2
4,827,398	+		Psyr_4042	0.80	+0.8
4,827,398	+		Psyr_4042	0.80	-1.7
4,827,399	-		Psyr_4042	0.80	+0.1
4,827,399	-		Psyr_4042	0.80	-2.7
4,827,399	-		Psyr_4042	0.80	+0.7
4,827,399	-		Psyr_4042	0.80	-1.0
4,827,399	-		Psyr_4042	0.80	+1.1
4,827,454	+				-0.2
4,827,454	+				-1.9
4,827,455	-				-1.0
4,827,458	+				-1.5
4,827,458	+				-0.4
4,827,459	-				+1.0
4,827,459	-				-0.6
4,827,459	-				-0.6
4,827,459	-				-1.0
4,827,483	-				-0.5
4,827,531	+				-0.1
4,827,531	+				-0.5
4,827,532	-				+1.4
4,827,540	+				-2.6
4,827,540	+				+2.0
4,827,563	+				+1.3
4,827,563	+				+0.7
4,827,564	-				-0.7
4,827,564	-				-0.0
4,827,564	-				+0.7
4,827,564	-				-1.5
4,827,564	-				-0.7
4,827,564	-				+0.3
4,827,564	-				-0.5
4,827,564	-				-1.0
4,827,567	+				-0.6
4,827,567	+				-0.3
4,827,567	+				+1.2
4,827,567	+				-0.5
4,827,567	+				-0.4
4,827,568	-				-0.7
4,827,568	-				+0.5
4,827,568	-				-0.6