Experiment: KB with Cyclopamine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3831 and Psyr_3832 are separated by 173 nucleotides Psyr_3832 and Psyr_3833 overlap by 11 nucleotides Psyr_3833 and Psyr_3834 are separated by 317 nucleotides
Psyr_3831: Psyr_3831 - ATP-dependent helicase HrpA, at 4,564,908 to 4,568,819
_3831
Psyr_3832: Psyr_3832 - Prevent-host-death protein, at 4,568,993 to 4,569,238
_3832
Psyr_3833: Psyr_3833 - Plasmid stabilization system, at 4,569,228 to 4,569,518
_3833
Psyr_3834: Psyr_3834 - AMP-dependent synthetase and ligase, at 4,569,836 to 4,571,527
_3834
Position (kb) 4569
4570 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4568.263 kb on + strand, within Psyr_3831 at 4568.453 kb on + strand at 4568.618 kb on - strand at 4568.908 kb on + strand at 4568.909 kb on - strand at 4569.223 kb on + strand at 4569.223 kb on + strand at 4569.223 kb on + strand at 4569.223 kb on + strand at 4569.223 kb on + strand at 4569.223 kb on + strand at 4569.224 kb on - strand at 4569.224 kb on - strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.236 kb on + strand at 4569.236 kb on + strand at 4569.237 kb on - strand at 4569.237 kb on - strand at 4569.237 kb on - strand at 4569.378 kb on + strand, within Psyr_3833 at 4569.378 kb on + strand, within Psyr_3833 at 4569.418 kb on - strand, within Psyr_3833 at 4569.434 kb on + strand, within Psyr_3833 at 4569.434 kb on + strand, within Psyr_3833 at 4569.434 kb on + strand, within Psyr_3833 at 4569.434 kb on + strand, within Psyr_3833 at 4569.435 kb on - strand, within Psyr_3833 at 4569.435 kb on - strand, within Psyr_3833 at 4569.435 kb on - strand, within Psyr_3833 at 4569.482 kb on + strand, within Psyr_3833 at 4569.486 kb on + strand, within Psyr_3833 at 4569.486 kb on + strand, within Psyr_3833 at 4569.486 kb on + strand, within Psyr_3833 at 4569.487 kb on - strand, within Psyr_3833 at 4569.538 kb on - strand at 4569.538 kb on - strand at 4569.538 kb on - strand at 4569.648 kb on - strand at 4569.744 kb on + strand at 4569.745 kb on - strand at 4569.745 kb on - strand at 4569.778 kb on + strand at 4569.778 kb on + strand at 4569.781 kb on - strand at 4569.781 kb on - strand at 4569.782 kb on + strand at 4569.783 kb on - strand at 4569.837 kb on + strand at 4569.837 kb on + strand at 4569.837 kb on + strand at 4569.837 kb on + strand at 4569.837 kb on + strand at 4569.837 kb on + strand at 4569.837 kb on + strand at 4569.838 kb on - strand at 4569.838 kb on - strand at 4569.838 kb on - strand at 4569.838 kb on - strand at 4570.106 kb on + strand, within Psyr_3834 at 4570.106 kb on + strand, within Psyr_3834 at 4570.156 kb on + strand, within Psyr_3834 at 4570.157 kb on - strand, within Psyr_3834 at 4570.157 kb on - strand, within Psyr_3834 at 4570.157 kb on - strand, within Psyr_3834 at 4570.186 kb on - strand, within Psyr_3834 at 4570.186 kb on - strand, within Psyr_3834 at 4570.407 kb on + strand, within Psyr_3834 at 4570.407 kb on + strand, within Psyr_3834 at 4570.407 kb on + strand, within Psyr_3834 at 4570.408 kb on - strand, within Psyr_3834 at 4570.408 kb on - strand, within Psyr_3834 at 4570.456 kb on - strand, within Psyr_3834 at 4570.456 kb on - strand, within Psyr_3834
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Cyclopamine 10 mM remove 4,568,263 + Psyr_3831 0.86 +0.1 4,568,453 + -0.2 4,568,618 - -1.4 4,568,908 + +1.6 4,568,909 - -0.1 4,569,223 + +1.3 4,569,223 + +0.4 4,569,223 + +0.5 4,569,223 + -0.8 4,569,223 + +0.2 4,569,223 + -1.2 4,569,224 - -0.6 4,569,224 - +0.7 4,569,225 + +0.4 4,569,225 + +0.5 4,569,225 + -1.2 4,569,225 + -2.1 4,569,225 + +0.2 4,569,225 + +0.9 4,569,225 + +2.2 4,569,225 + -1.4 4,569,225 + -0.1 4,569,225 + +0.1 4,569,225 + -0.6 4,569,225 + -2.1 4,569,225 + +0.5 4,569,225 + +0.6 4,569,225 + -0.8 4,569,225 + -1.4 4,569,225 + +0.7 4,569,225 + +0.1 4,569,225 + +1.6 4,569,225 + -0.2 4,569,225 + +3.5 4,569,225 + -0.2 4,569,225 + -0.7 4,569,225 + +0.3 4,569,225 + -2.5 4,569,225 + -0.2 4,569,225 + +0.2 4,569,225 + -1.0 4,569,225 + -0.3 4,569,225 + -0.5 4,569,225 + +0.9 4,569,225 + +0.2 4,569,225 + -0.6 4,569,225 + +0.1 4,569,225 + -1.1 4,569,226 - -0.1 4,569,226 - -1.4 4,569,226 - -2.2 4,569,226 - -1.0 4,569,226 - -1.3 4,569,226 - -3.0 4,569,226 - -0.9 4,569,226 - -0.9 4,569,226 - -0.7 4,569,226 - +0.8 4,569,226 - -1.6 4,569,226 - -0.8 4,569,226 - -1.9 4,569,226 - -0.5 4,569,226 - -1.1 4,569,226 - -2.4 4,569,226 - -1.1 4,569,226 - -2.0 4,569,226 - -0.6 4,569,226 - -1.2 4,569,226 - -1.1 4,569,226 - +0.8 4,569,226 - -0.6 4,569,226 - -0.5 4,569,226 - +0.1 4,569,226 - -0.2 4,569,226 - -0.5 4,569,226 - +0.9 4,569,226 - +0.2 4,569,226 - +2.5 4,569,226 - -1.1 4,569,226 - +0.4 4,569,226 - -0.4 4,569,226 - -0.3 4,569,226 - -0.1 4,569,236 + +0.9 4,569,236 + +1.6 4,569,237 - -1.0 4,569,237 - -0.3 4,569,237 - -0.8 4,569,378 + Psyr_3833 0.52 -1.2 4,569,378 + Psyr_3833 0.52 +0.8 4,569,418 - Psyr_3833 0.65 -0.2 4,569,434 + Psyr_3833 0.71 -0.2 4,569,434 + Psyr_3833 0.71 -2.6 4,569,434 + Psyr_3833 0.71 -0.6 4,569,434 + Psyr_3833 0.71 -0.6 4,569,435 - Psyr_3833 0.71 -0.5 4,569,435 - Psyr_3833 0.71 -1.0 4,569,435 - Psyr_3833 0.71 -1.7 4,569,482 + Psyr_3833 0.87 -0.5 4,569,486 + Psyr_3833 0.89 -1.6 4,569,486 + Psyr_3833 0.89 +0.5 4,569,486 + Psyr_3833 0.89 +0.2 4,569,487 - Psyr_3833 0.89 -2.3 4,569,538 - -1.4 4,569,538 - -2.2 4,569,538 - -1.9 4,569,648 - +0.2 4,569,744 + -2.4 4,569,745 - +1.6 4,569,745 - +0.6 4,569,778 + -0.8 4,569,778 + +1.3 4,569,781 - +0.5 4,569,781 - -0.3 4,569,782 + -1.0 4,569,783 - +0.3 4,569,837 + -0.5 4,569,837 + -0.4 4,569,837 + +0.4 4,569,837 + +0.3 4,569,837 + +0.6 4,569,837 + -0.5 4,569,837 + -1.4 4,569,838 - +0.4 4,569,838 - +0.6 4,569,838 - -0.5 4,569,838 - +0.2 4,570,106 + Psyr_3834 0.16 -0.3 4,570,106 + Psyr_3834 0.16 +0.3 4,570,156 + Psyr_3834 0.19 +0.4 4,570,157 - Psyr_3834 0.19 +0.9 4,570,157 - Psyr_3834 0.19 +0.7 4,570,157 - Psyr_3834 0.19 -0.4 4,570,186 - Psyr_3834 0.21 +0.4 4,570,186 - Psyr_3834 0.21 +1.5 4,570,407 + Psyr_3834 0.34 -0.4 4,570,407 + Psyr_3834 0.34 +1.5 4,570,407 + Psyr_3834 0.34 +1.4 4,570,408 - Psyr_3834 0.34 -0.5 4,570,408 - Psyr_3834 0.34 +1.8 4,570,456 - Psyr_3834 0.37 -1.9 4,570,456 - Psyr_3834 0.37 -0.8
Or see this region's nucleotide sequence