Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1588

Experiment: KB with Cyclopamine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1587 and Psyr_1588 are separated by 96 nucleotidesPsyr_1588 and Psyr_RNA26 are separated by 171 nucleotidesPsyr_RNA26 and Psyr_RNA27 are separated by 21 nucleotidesPsyr_RNA27 and Psyr_1589 are separated by 360 nucleotides Psyr_1587: Psyr_1587 - Bile acid:sodium symporter, at 1,786,080 to 1,787,027 _1587 Psyr_1588: Psyr_1588 - Putative exonuclease, RdgC, at 1,787,124 to 1,788,044 _1588 Psyr_RNA26: Psyr_RNA26 - tRNA-Val, at 1,788,216 to 1,788,291 _RNA26 Psyr_RNA27: Psyr_RNA27 - tRNA-Asp, at 1,788,313 to 1,788,389 _RNA27 Psyr_1589: Psyr_1589 - conserved hypothetical protein, at 1,788,750 to 1,789,145 _1589 Position (kb) 1787 1788 1789Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1786.124 kb on - strandat 1786.148 kb on + strandat 1786.148 kb on + strandat 1786.149 kb on - strandat 1786.307 kb on - strandat 1786.421 kb on + strand, within Psyr_1587at 1786.422 kb on - strand, within Psyr_1587at 1786.422 kb on - strand, within Psyr_1587at 1786.422 kb on - strand, within Psyr_1587at 1786.459 kb on + strand, within Psyr_1587at 1786.459 kb on + strand, within Psyr_1587at 1786.460 kb on - strand, within Psyr_1587at 1786.545 kb on - strand, within Psyr_1587at 1786.642 kb on - strand, within Psyr_1587at 1786.920 kb on - strand, within Psyr_1587at 1787.040 kb on - strandat 1787.040 kb on - strandat 1787.746 kb on + strand, within Psyr_1588at 1787.746 kb on + strand, within Psyr_1588at 1787.874 kb on + strand, within Psyr_1588at 1787.920 kb on + strand, within Psyr_1588at 1787.920 kb on + strand, within Psyr_1588at 1787.920 kb on + strand, within Psyr_1588at 1787.920 kb on + strand, within Psyr_1588at 1787.921 kb on - strand, within Psyr_1588at 1787.921 kb on - strand, within Psyr_1588at 1787.928 kb on + strand, within Psyr_1588at 1787.929 kb on - strand, within Psyr_1588at 1788.063 kb on + strandat 1788.063 kb on + strandat 1788.063 kb on + strandat 1788.063 kb on + strandat 1788.064 kb on - strandat 1788.064 kb on - strandat 1788.065 kb on + strandat 1788.065 kb on + strandat 1788.065 kb on + strandat 1788.065 kb on + strandat 1788.081 kb on - strandat 1788.125 kb on + strandat 1788.142 kb on + strandat 1788.175 kb on + strandat 1788.549 kb on + strandat 1788.549 kb on + strandat 1788.586 kb on + strandat 1788.627 kb on + strandat 1788.630 kb on + strandat 1788.631 kb on - strandat 1788.631 kb on - strandat 1788.687 kb on - strandat 1788.765 kb on - strandat 1788.775 kb on + strandat 1788.775 kb on + strandat 1788.775 kb on + strandat 1788.776 kb on - strandat 1788.823 kb on + strand, within Psyr_1589at 1788.893 kb on - strand, within Psyr_1589at 1788.897 kb on + strand, within Psyr_1589at 1788.916 kb on - strand, within Psyr_1589at 1788.927 kb on + strand, within Psyr_1589at 1788.927 kb on + strand, within Psyr_1589at 1788.928 kb on - strand, within Psyr_1589at 1788.928 kb on - strand, within Psyr_1589at 1789.020 kb on + strand, within Psyr_1589

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Cyclopamine 10 mM
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1,786,124 - -0.8
1,786,148 + +1.3
1,786,148 + -0.3
1,786,149 - +2.3
1,786,307 - -0.8
1,786,421 + Psyr_1587 0.36 -0.5
1,786,422 - Psyr_1587 0.36 -0.2
1,786,422 - Psyr_1587 0.36 -0.5
1,786,422 - Psyr_1587 0.36 -0.2
1,786,459 + Psyr_1587 0.40 +0.5
1,786,459 + Psyr_1587 0.40 -0.1
1,786,460 - Psyr_1587 0.40 +1.0
1,786,545 - Psyr_1587 0.49 +0.0
1,786,642 - Psyr_1587 0.59 +0.0
1,786,920 - Psyr_1587 0.89 +0.9
1,787,040 - -0.2
1,787,040 - +0.2
1,787,746 + Psyr_1588 0.68 -0.2
1,787,746 + Psyr_1588 0.68 -0.5
1,787,874 + Psyr_1588 0.81 -1.0
1,787,920 + Psyr_1588 0.86 -0.2
1,787,920 + Psyr_1588 0.86 -0.3
1,787,920 + Psyr_1588 0.86 -0.4
1,787,920 + Psyr_1588 0.86 -1.0
1,787,921 - Psyr_1588 0.87 -2.0
1,787,921 - Psyr_1588 0.87 -1.4
1,787,928 + Psyr_1588 0.87 -1.4
1,787,929 - Psyr_1588 0.87 +0.4
1,788,063 + +1.2
1,788,063 + -2.4
1,788,063 + -1.0
1,788,063 + +0.5
1,788,064 - +0.7
1,788,064 - -0.4
1,788,065 + -0.3
1,788,065 + +1.3
1,788,065 + +0.8
1,788,065 + -2.0
1,788,081 - +0.2
1,788,125 + +1.1
1,788,142 + -3.2
1,788,175 + -1.6
1,788,549 + -0.4
1,788,549 + -0.0
1,788,586 + -2.6
1,788,627 + +1.2
1,788,630 + +0.3
1,788,631 - -0.2
1,788,631 - -0.6
1,788,687 - +0.2
1,788,765 - -1.7
1,788,775 + -0.4
1,788,775 + -1.3
1,788,775 + -0.2
1,788,776 - +1.1
1,788,823 + Psyr_1589 0.18 -0.3
1,788,893 - Psyr_1589 0.36 +0.7
1,788,897 + Psyr_1589 0.37 -0.4
1,788,916 - Psyr_1589 0.42 -0.6
1,788,927 + Psyr_1589 0.45 +0.2
1,788,927 + Psyr_1589 0.45 -0.4
1,788,928 - Psyr_1589 0.45 -0.6
1,788,928 - Psyr_1589 0.45 +1.2
1,789,020 + Psyr_1589 0.68 +1.4

Or see this region's nucleotide sequence