Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0913

Experiment: KB with Cyclopamine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0912 and Psyr_0913 are separated by 339 nucleotidesPsyr_0913 and Psyr_0914 are separated by 64 nucleotides Psyr_0912: Psyr_0912 - DnaJ domain protein, at 1,034,782 to 1,035,903 _0912 Psyr_0913: Psyr_0913 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 1,036,243 to 1,038,300 _0913 Psyr_0914: Psyr_0914 - Glycosyl transferase, group 1, at 1,038,365 to 1,039,477 _0914 Position (kb) 1036 1037 1038 1039Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1035.415 kb on - strand, within Psyr_0912at 1035.530 kb on + strand, within Psyr_0912at 1035.531 kb on - strand, within Psyr_0912at 1035.545 kb on + strand, within Psyr_0912at 1035.545 kb on + strand, within Psyr_0912at 1035.545 kb on + strand, within Psyr_0912at 1035.546 kb on - strand, within Psyr_0912at 1035.546 kb on - strand, within Psyr_0912at 1035.546 kb on - strand, within Psyr_0912at 1035.546 kb on - strand, within Psyr_0912at 1035.546 kb on - strand, within Psyr_0912at 1035.555 kb on - strand, within Psyr_0912at 1035.555 kb on - strand, within Psyr_0912at 1035.555 kb on - strand, within Psyr_0912at 1035.555 kb on - strand, within Psyr_0912at 1035.615 kb on + strand, within Psyr_0912at 1035.615 kb on + strand, within Psyr_0912at 1035.615 kb on + strand, within Psyr_0912at 1035.616 kb on - strand, within Psyr_0912at 1035.616 kb on - strand, within Psyr_0912at 1035.630 kb on + strand, within Psyr_0912at 1035.630 kb on + strand, within Psyr_0912at 1035.630 kb on + strand, within Psyr_0912at 1035.630 kb on + strand, within Psyr_0912at 1035.630 kb on + strand, within Psyr_0912at 1035.630 kb on + strand, within Psyr_0912at 1035.630 kb on + strand, within Psyr_0912at 1035.631 kb on - strand, within Psyr_0912at 1035.631 kb on - strand, within Psyr_0912at 1035.631 kb on - strand, within Psyr_0912at 1035.631 kb on - strand, within Psyr_0912at 1035.631 kb on - strand, within Psyr_0912at 1035.631 kb on - strand, within Psyr_0912at 1035.631 kb on - strand, within Psyr_0912at 1035.631 kb on - strand, within Psyr_0912at 1035.631 kb on - strand, within Psyr_0912at 1035.936 kb on + strandat 1035.937 kb on - strandat 1035.991 kb on + strandat 1035.991 kb on + strandat 1035.991 kb on + strandat 1035.992 kb on - strandat 1035.992 kb on - strandat 1036.060 kb on - strandat 1036.060 kb on - strandat 1036.060 kb on - strandat 1036.060 kb on - strandat 1036.369 kb on + strandat 1036.369 kb on + strandat 1036.370 kb on - strandat 1036.370 kb on - strandat 1036.553 kb on + strand, within Psyr_0913at 1036.804 kb on + strand, within Psyr_0913at 1036.804 kb on + strand, within Psyr_0913at 1036.804 kb on + strand, within Psyr_0913at 1036.804 kb on + strand, within Psyr_0913at 1036.804 kb on + strand, within Psyr_0913at 1036.804 kb on + strand, within Psyr_0913at 1036.804 kb on + strand, within Psyr_0913at 1036.804 kb on + strand, within Psyr_0913at 1036.804 kb on + strand, within Psyr_0913at 1036.805 kb on - strand, within Psyr_0913at 1036.805 kb on - strand, within Psyr_0913at 1036.805 kb on - strand, within Psyr_0913at 1036.805 kb on - strand, within Psyr_0913at 1036.805 kb on - strand, within Psyr_0913at 1036.805 kb on - strand, within Psyr_0913at 1036.805 kb on - strand, within Psyr_0913at 1037.035 kb on + strand, within Psyr_0913at 1037.035 kb on + strand, within Psyr_0913at 1037.035 kb on + strand, within Psyr_0913at 1037.035 kb on + strand, within Psyr_0913at 1037.035 kb on + strand, within Psyr_0913at 1037.035 kb on + strand, within Psyr_0913at 1037.035 kb on + strand, within Psyr_0913at 1037.035 kb on + strand, within Psyr_0913at 1037.035 kb on + strand, within Psyr_0913at 1037.035 kb on + strand, within Psyr_0913at 1037.035 kb on + strand, within Psyr_0913at 1037.035 kb on + strand, within Psyr_0913at 1037.035 kb on + strand, within Psyr_0913at 1037.035 kb on + strand, within Psyr_0913at 1037.036 kb on - strand, within Psyr_0913at 1037.036 kb on - strand, within Psyr_0913at 1037.036 kb on - strand, within Psyr_0913at 1037.036 kb on - strand, within Psyr_0913at 1037.036 kb on - strand, within Psyr_0913at 1037.036 kb on - strand, within Psyr_0913at 1037.209 kb on + strand, within Psyr_0913at 1037.209 kb on + strand, within Psyr_0913at 1037.209 kb on + strand, within Psyr_0913at 1037.209 kb on + strand, within Psyr_0913at 1037.212 kb on + strand, within Psyr_0913at 1037.212 kb on + strand, within Psyr_0913at 1037.212 kb on + strand, within Psyr_0913at 1037.213 kb on - strand, within Psyr_0913at 1037.284 kb on + strand, within Psyr_0913at 1037.284 kb on + strand, within Psyr_0913at 1037.284 kb on + strand, within Psyr_0913at 1037.284 kb on + strand, within Psyr_0913at 1037.284 kb on + strand, within Psyr_0913at 1037.284 kb on + strand, within Psyr_0913at 1037.284 kb on + strand, within Psyr_0913at 1037.285 kb on - strand, within Psyr_0913at 1037.285 kb on - strand, within Psyr_0913at 1037.285 kb on - strand, within Psyr_0913at 1037.285 kb on - strand, within Psyr_0913at 1037.285 kb on - strand, within Psyr_0913at 1037.285 kb on - strand, within Psyr_0913at 1037.451 kb on + strand, within Psyr_0913at 1037.929 kb on - strand, within Psyr_0913at 1038.119 kb on + strandat 1038.240 kb on + strandat 1038.301 kb on + strandat 1038.301 kb on + strandat 1038.301 kb on + strandat 1038.301 kb on + strandat 1038.302 kb on - strandat 1038.302 kb on - strandat 1038.302 kb on - strandat 1038.302 kb on - strandat 1038.384 kb on + strandat 1038.384 kb on + strandat 1038.384 kb on + strandat 1038.534 kb on - strand, within Psyr_0914at 1038.559 kb on + strand, within Psyr_0914at 1038.567 kb on + strand, within Psyr_0914at 1038.567 kb on + strand, within Psyr_0914at 1038.567 kb on + strand, within Psyr_0914at 1038.567 kb on + strand, within Psyr_0914at 1038.567 kb on + strand, within Psyr_0914at 1038.567 kb on + strand, within Psyr_0914at 1038.567 kb on + strand, within Psyr_0914at 1038.568 kb on - strand, within Psyr_0914at 1038.568 kb on - strand, within Psyr_0914at 1038.568 kb on - strand, within Psyr_0914at 1038.612 kb on + strand, within Psyr_0914at 1038.612 kb on + strand, within Psyr_0914at 1038.612 kb on + strand, within Psyr_0914at 1038.612 kb on + strand, within Psyr_0914at 1038.613 kb on - strand, within Psyr_0914at 1038.613 kb on - strand, within Psyr_0914at 1038.656 kb on + strand, within Psyr_0914at 1038.656 kb on + strand, within Psyr_0914at 1038.656 kb on + strand, within Psyr_0914at 1038.656 kb on + strand, within Psyr_0914at 1038.657 kb on - strand, within Psyr_0914at 1038.657 kb on - strand, within Psyr_0914at 1038.657 kb on - strand, within Psyr_0914at 1038.657 kb on - strand, within Psyr_0914at 1038.657 kb on - strand, within Psyr_0914at 1038.657 kb on - strand, within Psyr_0914at 1038.682 kb on - strand, within Psyr_0914at 1038.861 kb on + strand, within Psyr_0914at 1038.861 kb on + strand, within Psyr_0914at 1038.861 kb on + strand, within Psyr_0914at 1038.861 kb on + strand, within Psyr_0914at 1038.862 kb on - strand, within Psyr_0914at 1038.862 kb on - strand, within Psyr_0914at 1038.862 kb on - strand, within Psyr_0914at 1038.862 kb on - strand, within Psyr_0914at 1038.862 kb on - strand, within Psyr_0914at 1038.862 kb on - strand, within Psyr_0914at 1039.026 kb on + strand, within Psyr_0914at 1039.027 kb on - strand, within Psyr_0914at 1039.089 kb on + strand, within Psyr_0914at 1039.090 kb on - strand, within Psyr_0914at 1039.090 kb on - strand, within Psyr_0914

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Cyclopamine 10 mM
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1,035,415 - Psyr_0912 0.56 -0.5
1,035,530 + Psyr_0912 0.67 +0.7
1,035,531 - Psyr_0912 0.67 +0.2
1,035,545 + Psyr_0912 0.68 -0.4
1,035,545 + Psyr_0912 0.68 -0.0
1,035,545 + Psyr_0912 0.68 -1.3
1,035,546 - Psyr_0912 0.68 -0.1
1,035,546 - Psyr_0912 0.68 -2.0
1,035,546 - Psyr_0912 0.68 +0.8
1,035,546 - Psyr_0912 0.68 -1.6
1,035,546 - Psyr_0912 0.68 +2.6
1,035,555 - Psyr_0912 0.69 -0.4
1,035,555 - Psyr_0912 0.69 +0.1
1,035,555 - Psyr_0912 0.69 -0.4
1,035,555 - Psyr_0912 0.69 -1.2
1,035,615 + Psyr_0912 0.74 -0.4
1,035,615 + Psyr_0912 0.74 +1.3
1,035,615 + Psyr_0912 0.74 +0.8
1,035,616 - Psyr_0912 0.74 +0.3
1,035,616 - Psyr_0912 0.74 +0.3
1,035,630 + Psyr_0912 0.76 -0.9
1,035,630 + Psyr_0912 0.76 -1.6
1,035,630 + Psyr_0912 0.76 -0.3
1,035,630 + Psyr_0912 0.76 +0.3
1,035,630 + Psyr_0912 0.76 -1.1
1,035,630 + Psyr_0912 0.76 -0.0
1,035,630 + Psyr_0912 0.76 +1.3
1,035,631 - Psyr_0912 0.76 +0.5
1,035,631 - Psyr_0912 0.76 -0.3
1,035,631 - Psyr_0912 0.76 -0.6
1,035,631 - Psyr_0912 0.76 -3.2
1,035,631 - Psyr_0912 0.76 -0.8
1,035,631 - Psyr_0912 0.76 +0.6
1,035,631 - Psyr_0912 0.76 +0.9
1,035,631 - Psyr_0912 0.76 +0.4
1,035,631 - Psyr_0912 0.76 +1.6
1,035,936 + +0.4
1,035,937 - -0.5
1,035,991 + -0.4
1,035,991 + +0.8
1,035,991 + +0.0
1,035,992 - +0.0
1,035,992 - -0.6
1,036,060 - +1.4
1,036,060 - -0.1
1,036,060 - +1.3
1,036,060 - +0.3
1,036,369 + +0.4
1,036,369 + -0.1
1,036,370 - -3.2
1,036,370 - +1.0
1,036,553 + Psyr_0913 0.15 -1.2
1,036,804 + Psyr_0913 0.27 +1.4
1,036,804 + Psyr_0913 0.27 +0.3
1,036,804 + Psyr_0913 0.27 +0.5
1,036,804 + Psyr_0913 0.27 +0.1
1,036,804 + Psyr_0913 0.27 +1.0
1,036,804 + Psyr_0913 0.27 -0.5
1,036,804 + Psyr_0913 0.27 -1.4
1,036,804 + Psyr_0913 0.27 +1.2
1,036,804 + Psyr_0913 0.27 +0.4
1,036,805 - Psyr_0913 0.27 +0.2
1,036,805 - Psyr_0913 0.27 -1.3
1,036,805 - Psyr_0913 0.27 -0.6
1,036,805 - Psyr_0913 0.27 +0.1
1,036,805 - Psyr_0913 0.27 -0.4
1,036,805 - Psyr_0913 0.27 +0.8
1,036,805 - Psyr_0913 0.27 +0.8
1,037,035 + Psyr_0913 0.38 -0.7
1,037,035 + Psyr_0913 0.38 +0.4
1,037,035 + Psyr_0913 0.38 +0.4
1,037,035 + Psyr_0913 0.38 +0.4
1,037,035 + Psyr_0913 0.38 -0.6
1,037,035 + Psyr_0913 0.38 +0.9
1,037,035 + Psyr_0913 0.38 -0.9
1,037,035 + Psyr_0913 0.38 +0.5
1,037,035 + Psyr_0913 0.38 +0.8
1,037,035 + Psyr_0913 0.38 +0.8
1,037,035 + Psyr_0913 0.38 -0.4
1,037,035 + Psyr_0913 0.38 +1.2
1,037,035 + Psyr_0913 0.38 -0.2
1,037,035 + Psyr_0913 0.38 -0.6
1,037,036 - Psyr_0913 0.39 +0.3
1,037,036 - Psyr_0913 0.39 +0.9
1,037,036 - Psyr_0913 0.39 -0.0
1,037,036 - Psyr_0913 0.39 +0.3
1,037,036 - Psyr_0913 0.39 -0.6
1,037,036 - Psyr_0913 0.39 +0.8
1,037,209 + Psyr_0913 0.47 -0.2
1,037,209 + Psyr_0913 0.47 +0.6
1,037,209 + Psyr_0913 0.47 +1.9
1,037,209 + Psyr_0913 0.47 -0.2
1,037,212 + Psyr_0913 0.47 +0.2
1,037,212 + Psyr_0913 0.47 +0.4
1,037,212 + Psyr_0913 0.47 +0.4
1,037,213 - Psyr_0913 0.47 +0.3
1,037,284 + Psyr_0913 0.51 +0.3
1,037,284 + Psyr_0913 0.51 +0.7
1,037,284 + Psyr_0913 0.51 -0.5
1,037,284 + Psyr_0913 0.51 -0.1
1,037,284 + Psyr_0913 0.51 +1.2
1,037,284 + Psyr_0913 0.51 +1.2
1,037,284 + Psyr_0913 0.51 -1.0
1,037,285 - Psyr_0913 0.51 -0.7
1,037,285 - Psyr_0913 0.51 -1.6
1,037,285 - Psyr_0913 0.51 -0.7
1,037,285 - Psyr_0913 0.51 -0.6
1,037,285 - Psyr_0913 0.51 +0.9
1,037,285 - Psyr_0913 0.51 +0.2
1,037,451 + Psyr_0913 0.59 +0.5
1,037,929 - Psyr_0913 0.82 +0.8
1,038,119 + +1.0
1,038,240 + -0.9
1,038,301 + +1.0
1,038,301 + -0.1
1,038,301 + -0.8
1,038,301 + -0.6
1,038,302 - -0.9
1,038,302 - -0.2
1,038,302 - +0.7
1,038,302 - -0.3
1,038,384 + +1.5
1,038,384 + -1.0
1,038,384 + +1.3
1,038,534 - Psyr_0914 0.15 -0.3
1,038,559 + Psyr_0914 0.17 +0.1
1,038,567 + Psyr_0914 0.18 -0.0
1,038,567 + Psyr_0914 0.18 -0.4
1,038,567 + Psyr_0914 0.18 -0.7
1,038,567 + Psyr_0914 0.18 -0.4
1,038,567 + Psyr_0914 0.18 -0.2
1,038,567 + Psyr_0914 0.18 +1.0
1,038,567 + Psyr_0914 0.18 -0.9
1,038,568 - Psyr_0914 0.18 +0.5
1,038,568 - Psyr_0914 0.18 -2.2
1,038,568 - Psyr_0914 0.18 +0.6
1,038,612 + Psyr_0914 0.22 -0.1
1,038,612 + Psyr_0914 0.22 +0.6
1,038,612 + Psyr_0914 0.22 -1.3
1,038,612 + Psyr_0914 0.22 -0.7
1,038,613 - Psyr_0914 0.22 -0.1
1,038,613 - Psyr_0914 0.22 -0.8
1,038,656 + Psyr_0914 0.26 +0.8
1,038,656 + Psyr_0914 0.26 -0.5
1,038,656 + Psyr_0914 0.26 +0.4
1,038,656 + Psyr_0914 0.26 -0.1
1,038,657 - Psyr_0914 0.26 +0.6
1,038,657 - Psyr_0914 0.26 -0.5
1,038,657 - Psyr_0914 0.26 -0.0
1,038,657 - Psyr_0914 0.26 +0.4
1,038,657 - Psyr_0914 0.26 -0.8
1,038,657 - Psyr_0914 0.26 -0.6
1,038,682 - Psyr_0914 0.28 +0.5
1,038,861 + Psyr_0914 0.45 +2.3
1,038,861 + Psyr_0914 0.45 +0.3
1,038,861 + Psyr_0914 0.45 -0.4
1,038,861 + Psyr_0914 0.45 -0.9
1,038,862 - Psyr_0914 0.45 -1.0
1,038,862 - Psyr_0914 0.45 -0.8
1,038,862 - Psyr_0914 0.45 -0.0
1,038,862 - Psyr_0914 0.45 +0.6
1,038,862 - Psyr_0914 0.45 +0.8
1,038,862 - Psyr_0914 0.45 -0.2
1,039,026 + Psyr_0914 0.59 -0.6
1,039,027 - Psyr_0914 0.59 -0.2
1,039,089 + Psyr_0914 0.65 +0.1
1,039,090 - Psyr_0914 0.65 +2.6
1,039,090 - Psyr_0914 0.65 -0.8

Or see this region's nucleotide sequence