Experiment: Nitrate reduction, replicate C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_26305 and AO353_26310 overlap by 4 nucleotides AO353_26310 and AO353_26315 are separated by 10 nucleotides AO353_26315 and AO353_26320 are separated by 5 nucleotides AO353_26320 and AO353_26325 overlap by 14 nucleotides
AO353_26305: AO353_26305 - hypothetical protein, at 5,778,256 to 5,778,876
_26305
AO353_26310: AO353_26310 - hypothetical protein, at 5,778,873 to 5,779,460
_26310
AO353_26315: AO353_26315 - hypothetical protein, at 5,779,471 to 5,779,971
_26315
AO353_26320: AO353_26320 - hypothetical protein, at 5,779,977 to 5,780,771
_26320
AO353_26325: AO353_26325 - phage replication protein, at 5,780,758 to 5,781,741
_26325
Position (kb) 5779
5780 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5778.524 kb on + strand, within AO353_26305 at 5778.840 kb on + strand at 5778.841 kb on - strand at 5778.841 kb on - strand at 5778.880 kb on + strand at 5778.880 kb on + strand at 5778.880 kb on + strand at 5778.976 kb on + strand, within AO353_26310 at 5779.004 kb on + strand, within AO353_26310 at 5779.052 kb on + strand, within AO353_26310 at 5779.052 kb on + strand, within AO353_26310 at 5779.053 kb on - strand, within AO353_26310 at 5779.053 kb on - strand, within AO353_26310 at 5779.053 kb on - strand, within AO353_26310 at 5779.053 kb on - strand, within AO353_26310 at 5779.067 kb on - strand, within AO353_26310 at 5779.165 kb on + strand, within AO353_26310 at 5779.165 kb on + strand, within AO353_26310 at 5779.166 kb on - strand, within AO353_26310 at 5779.166 kb on - strand, within AO353_26310 at 5779.285 kb on + strand, within AO353_26310 at 5779.285 kb on + strand, within AO353_26310 at 5779.472 kb on + strand at 5779.590 kb on + strand, within AO353_26315 at 5779.590 kb on + strand, within AO353_26315 at 5779.591 kb on - strand, within AO353_26315 at 5779.591 kb on - strand, within AO353_26315 at 5779.621 kb on + strand, within AO353_26315 at 5779.621 kb on + strand, within AO353_26315 at 5779.621 kb on + strand, within AO353_26315 at 5779.645 kb on + strand, within AO353_26315 at 5779.646 kb on - strand, within AO353_26315 at 5779.681 kb on + strand, within AO353_26315 at 5779.682 kb on - strand, within AO353_26315 at 5779.684 kb on + strand, within AO353_26315 at 5779.684 kb on + strand, within AO353_26315 at 5779.684 kb on + strand, within AO353_26315 at 5779.823 kb on + strand, within AO353_26315 at 5779.824 kb on - strand, within AO353_26315 at 5779.905 kb on - strand, within AO353_26315 at 5779.998 kb on + strand at 5780.030 kb on + strand at 5780.030 kb on + strand at 5780.038 kb on + strand at 5780.038 kb on + strand at 5780.038 kb on + strand at 5780.038 kb on + strand at 5780.038 kb on + strand at 5780.043 kb on - strand at 5780.233 kb on + strand, within AO353_26320 at 5780.268 kb on - strand, within AO353_26320 at 5780.377 kb on + strand, within AO353_26320 at 5780.377 kb on + strand, within AO353_26320 at 5780.378 kb on - strand, within AO353_26320 at 5780.378 kb on - strand, within AO353_26320 at 5780.649 kb on + strand, within AO353_26320 at 5780.649 kb on + strand, within AO353_26320 at 5780.649 kb on + strand, within AO353_26320 at 5780.649 kb on + strand, within AO353_26320 at 5780.649 kb on + strand, within AO353_26320 at 5780.650 kb on - strand, within AO353_26320 at 5780.650 kb on - strand, within AO353_26320 at 5780.650 kb on - strand, within AO353_26320 at 5780.650 kb on - strand, within AO353_26320 at 5780.650 kb on - strand, within AO353_26320 at 5780.650 kb on - strand, within AO353_26320 at 5780.650 kb on - strand, within AO353_26320 at 5780.699 kb on + strand at 5780.765 kb on + strand at 5780.765 kb on + strand at 5780.906 kb on + strand, within AO353_26325 at 5780.906 kb on + strand, within AO353_26325 at 5780.907 kb on - strand, within AO353_26325 at 5780.907 kb on - strand, within AO353_26325 at 5780.907 kb on - strand, within AO353_26325
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C remove 5,778,524 + AO353_26305 0.43 -1.1 5,778,840 + -1.8 5,778,841 - +1.9 5,778,841 - -1.3 5,778,880 + +0.9 5,778,880 + -0.8 5,778,880 + -1.4 5,778,976 + AO353_26310 0.18 -0.5 5,779,004 + AO353_26310 0.22 +2.9 5,779,052 + AO353_26310 0.30 +0.7 5,779,052 + AO353_26310 0.30 +1.3 5,779,053 - AO353_26310 0.31 +1.3 5,779,053 - AO353_26310 0.31 -0.4 5,779,053 - AO353_26310 0.31 -0.7 5,779,053 - AO353_26310 0.31 -1.4 5,779,067 - AO353_26310 0.33 -1.8 5,779,165 + AO353_26310 0.50 +0.9 5,779,165 + AO353_26310 0.50 -1.3 5,779,166 - AO353_26310 0.50 -1.1 5,779,166 - AO353_26310 0.50 +3.2 5,779,285 + AO353_26310 0.70 -1.2 5,779,285 + AO353_26310 0.70 -0.1 5,779,472 + -0.4 5,779,590 + AO353_26315 0.24 -0.1 5,779,590 + AO353_26315 0.24 +0.9 5,779,591 - AO353_26315 0.24 -1.4 5,779,591 - AO353_26315 0.24 -1.6 5,779,621 + AO353_26315 0.30 -1.4 5,779,621 + AO353_26315 0.30 -0.1 5,779,621 + AO353_26315 0.30 -1.4 5,779,645 + AO353_26315 0.35 -0.7 5,779,646 - AO353_26315 0.35 -2.3 5,779,681 + AO353_26315 0.42 -1.7 5,779,682 - AO353_26315 0.42 -1.8 5,779,684 + AO353_26315 0.43 -0.1 5,779,684 + AO353_26315 0.43 -0.4 5,779,684 + AO353_26315 0.43 -1.3 5,779,823 + AO353_26315 0.70 -1.4 5,779,824 - AO353_26315 0.70 -0.0 5,779,905 - AO353_26315 0.87 +2.2 5,779,998 + -1.0 5,780,030 + -0.9 5,780,030 + -0.1 5,780,038 + +1.9 5,780,038 + +0.3 5,780,038 + -0.9 5,780,038 + -0.4 5,780,038 + +0.3 5,780,043 - -0.9 5,780,233 + AO353_26320 0.32 +0.7 5,780,268 - AO353_26320 0.37 -1.1 5,780,377 + AO353_26320 0.50 -1.3 5,780,377 + AO353_26320 0.50 -0.1 5,780,378 - AO353_26320 0.50 -2.0 5,780,378 - AO353_26320 0.50 -1.1 5,780,649 + AO353_26320 0.85 -0.4 5,780,649 + AO353_26320 0.85 +1.3 5,780,649 + AO353_26320 0.85 +0.7 5,780,649 + AO353_26320 0.85 +1.9 5,780,649 + AO353_26320 0.85 -1.9 5,780,650 - AO353_26320 0.85 +0.3 5,780,650 - AO353_26320 0.85 -1.4 5,780,650 - AO353_26320 0.85 -1.1 5,780,650 - AO353_26320 0.85 -0.9 5,780,650 - AO353_26320 0.85 -0.6 5,780,650 - AO353_26320 0.85 -0.4 5,780,650 - AO353_26320 0.85 -1.1 5,780,699 + -1.3 5,780,765 + -0.9 5,780,765 + -0.1 5,780,906 + AO353_26325 0.15 +0.9 5,780,906 + AO353_26325 0.15 +0.3 5,780,907 - AO353_26325 0.15 +0.3 5,780,907 - AO353_26325 0.15 -1.9 5,780,907 - AO353_26325 0.15 +0.6
Or see this region's nucleotide sequence