Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25255

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
5,569,826	-		AO353_25250	0.54	-1.1
5,569,914	-		AO353_25250	0.61	+0.6
5,569,914	-		AO353_25250	0.61	-0.6
5,569,961	+		AO353_25250	0.64	-1.4
5,569,961	+		AO353_25250	0.64	-0.7
5,569,961	+		AO353_25250	0.64	-2.0
5,569,961	+		AO353_25250	0.64	-0.9
5,569,961	+		AO353_25250	0.64	-2.0
5,570,010	-		AO353_25250	0.68	+0.3
5,570,010	-		AO353_25250	0.68	-1.3
5,570,096	+		AO353_25250	0.74	+0.9
5,570,097	-		AO353_25250	0.74	-0.4
5,570,165	+		AO353_25250	0.79	-0.3
5,570,165	+		AO353_25250	0.79	-0.1
5,570,166	-		AO353_25250	0.79	-1.3
5,570,166	-		AO353_25250	0.79	-0.4
5,570,282	+		AO353_25250	0.88	-0.1
5,570,433	+				-1.1
5,570,433	+				+0.3
5,570,433	+				+0.9
5,570,434	-				-2.4
5,570,434	-				-2.4
5,570,493	+				-1.2
5,570,493	+				-1.1
5,570,493	+				-0.1
5,570,493	+				+1.9
5,570,493	+				-0.7
5,570,494	-				+1.9
5,570,494	-				+0.4
5,570,494	-				-1.3
5,570,494	-				-0.4
5,570,504	+				+1.5
5,570,583	+				-0.7
5,570,583	+				-1.7
5,570,584	-				-0.3
5,570,584	-				+0.7
5,570,584	-				+1.2
5,570,584	-				+0.9
5,570,587	+				+0.5
5,570,587	+				-0.6
5,570,587	+				-1.5
5,570,587	+				-3.3
5,570,588	-				-1.1
5,570,588	-				+0.5
5,570,588	-				-0.4
5,570,588	-				-0.4
5,570,588	-				-1.8
5,570,593	+				+0.3
5,570,593	+				-0.7
5,570,593	+				+0.9
5,570,593	+				-2.0
5,570,593	+				-3.2
5,570,593	+				-0.7
5,570,594	-				-2.0
5,570,594	-				-1.6
5,570,594	-				+0.5
5,570,594	-				-1.6
5,570,608	+				-0.9
5,570,608	+				-1.7
5,570,608	+				+0.9
5,570,609	-				-2.1
5,570,609	-				+0.6
5,570,609	-				-0.4
5,570,612	+				+0.1
5,570,612	+				-0.7
5,570,613	-				-1.7
5,570,667	+				-1.6
5,570,680	+				+0.3
5,570,680	+				+0.3
5,570,680	+				-1.4
5,570,680	+				-0.7
5,570,681	-				-0.7
5,570,681	-				-1.9
5,570,860	+				+0.0
5,570,860	+				-2.4
5,570,860	+				-1.1
5,570,861	-				+1.3
5,570,861	-				-1.8
5,570,861	-				-0.8
5,570,861	-				+1.1
5,570,861	-				-1.3
5,570,881	+				-1.4
5,570,881	+				-1.8
5,570,881	+				-2.3
5,570,881	+				-1.3
5,570,882	-				-1.1
5,570,882	-				-0.7
5,570,882	-				-1.4
5,570,882	-				-0.1
5,570,966	-		AO353_25255	0.12	-0.5
5,570,966	-		AO353_25255	0.12	+1.5
5,570,966	-		AO353_25255	0.12	-1.6
5,570,966	-		AO353_25255	0.12	-0.7
5,570,966	-		AO353_25255	0.12	+1.9
5,570,970	-		AO353_25255	0.12	-2.8
5,570,970	-		AO353_25255	0.12	-0.7
5,571,352	+		AO353_25255	0.30	-0.1
5,571,352	+		AO353_25255	0.30	-0.7
5,571,361	+		AO353_25255	0.31	-0.9
5,571,361	+		AO353_25255	0.31	-0.1
5,571,361	+		AO353_25255	0.31	-0.1
5,571,361	+		AO353_25255	0.31	+0.4
5,571,361	+		AO353_25255	0.31	-1.8
5,571,568	+				+1.9
5,571,568	+		AO353_25255	0.41	-2.6
5,571,569	-		AO353_25255	0.41	-0.9
5,571,569	-		AO353_25255	0.41	+1.9
5,571,569	-		AO353_25255	0.41	-1.3
5,571,627	+		AO353_25255	0.44	-1.3
5,571,628	-		AO353_25255	0.44	+0.9
5,571,713	+		AO353_25255	0.48	-2.2
5,571,714	-				+0.3
5,571,720	+		AO353_25255	0.48	-2.0
5,571,895	+		AO353_25255	0.57	-1.4
5,571,941	+		AO353_25255	0.59	+0.6
5,571,942	-		AO353_25255	0.59	-0.9
5,571,982	-		AO353_25255	0.61	-2.2
5,572,407	+		AO353_25255	0.82	-3.0
5,572,445	-		AO353_25255	0.83	-0.7
5,572,445	-		AO353_25255	0.83	-1.9
5,572,445	-		AO353_25255	0.83	-0.1
5,572,562	-		AO353_25255	0.89	+0.9
5,572,562	-		AO353_25255	0.89	+0.9
5,572,562	-		AO353_25255	0.89	+0.1
5,572,784	-				+0.6
5,572,882	+		AO353_25260	0.41	-0.1
5,572,882	+		AO353_25260	0.41	-1.1
5,572,882	+		AO353_25260	0.41	+1.5
5,572,882	+		AO353_25260	0.41	-2.3
5,572,882	+		AO353_25260	0.41	+0.4
5,572,930	+		AO353_25260	0.65	+0.5
5,572,930	+		AO353_25260	0.65	-1.2
5,572,931	-		AO353_25260	0.66	-0.3
5,572,931	-		AO353_25260	0.66	-0.3
5,573,113	-				+0.3
5,573,185	+				-0.7
5,573,185	+				-0.9
5,573,222	-				-2.4
5,573,389	-		AO353_25265	0.17	+1.9
5,573,633	+		AO353_25265	0.32	-0.6
5,573,633	+		AO353_25265	0.32	-0.3
5,573,633	+		AO353_25265	0.32	+0.6
5,573,633	+		AO353_25265	0.32	+0.6
5,573,634	-		AO353_25265	0.32	-1.6