Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_17990

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
3,960,179	+		AO353_17985	0.31	+2.6
3,960,179	+		AO353_17985	0.31	-2.1
3,960,180	-		AO353_17985	0.31	+0.1
3,960,237	+		AO353_17985	0.37	+1.1
3,960,279	+		AO353_17985	0.42	+1.6
3,960,279	+		AO353_17985	0.42	-0.1
3,960,279	+		AO353_17985	0.42	+0.6
3,960,280	-		AO353_17985	0.42	-1.2
3,960,280	-		AO353_17985	0.42	-1.5
3,960,280	-		AO353_17985	0.42	+1.2
3,960,280	-		AO353_17985	0.42	-0.4
3,960,280	-		AO353_17985	0.42	+0.1
3,960,291	+		AO353_17985	0.43	-0.7
3,960,291	+		AO353_17985	0.43	+2.6
3,960,291	+		AO353_17985	0.43	+1.1
3,960,292	-		AO353_17985	0.43	-0.9
3,960,292	-		AO353_17985	0.43	-0.4
3,960,433	+		AO353_17985	0.59	-0.4
3,960,455	+		AO353_17985	0.61	-1.2
3,960,456	-		AO353_17985	0.61	+0.5
3,960,456	-		AO353_17985	0.61	-0.7
3,960,456	-		AO353_17985	0.61	+1.1
3,960,465	+		AO353_17985	0.62	+2.0
3,960,828	+				-3.2
3,960,829	-				+0.6
3,960,829	-				-2.5
3,960,847	+				+0.9
3,960,847	+				-2.9
3,960,847	+				-0.4
3,960,848	-				-0.2
3,960,848	-				-1.2
3,960,848	-				-1.5
3,960,850	+				-0.7
3,960,850	+				-0.9
3,960,850	+				-0.6
3,960,851	-				-1.8
3,960,851	-				+0.1
3,960,851	-				-1.9
3,960,851	-				-0.2
3,960,924	+				-2.1
3,960,924	+				-0.3
3,960,924	+				-1.2
3,960,924	+				-1.4
3,960,924	+				+0.0
3,960,924	+				-2.2
3,960,924	+				-1.1
3,960,924	+				-0.8
3,960,924	+				-0.3
3,960,925	-				+0.6
3,960,925	-				-0.9
3,960,925	-				+0.3
3,961,313	+		AO353_17990	0.28	+0.1
3,961,650	-		AO353_17990	0.54	-2.8
3,961,727	+		AO353_17990	0.60	-0.4
3,961,727	+		AO353_17990	0.60	-1.6
3,961,728	-		AO353_17990	0.60	+0.6
3,961,728	-		AO353_17990	0.60	-1.7
3,961,783	-		AO353_17990	0.64	+3.2
3,961,783	-		AO353_17990	0.64	-0.2
3,961,783	-		AO353_17990	0.64	-0.9
3,961,783	-		AO353_17990	0.64	-1.5
3,961,783	-		AO353_17990	0.64	-2.1
3,961,783	-		AO353_17990	0.64	+1.3
3,961,826	+		AO353_17990	0.68	+0.3
3,961,827	-		AO353_17990	0.68	-1.5
3,961,835	+		AO353_17990	0.68	-1.5
3,961,835	+		AO353_17990	0.68	+1.6
3,961,836	-		AO353_17990	0.68	-1.7
3,961,925	+		AO353_17990	0.75	+1.6
3,961,925	+		AO353_17990	0.75	-1.4
3,961,925	+		AO353_17990	0.75	+0.1
3,961,925	+		AO353_17990	0.75	-2.5
3,961,925	+		AO353_17990	0.75	-0.7
3,961,925	+		AO353_17990	0.75	-1.4
3,962,072	+		AO353_17990	0.87	+3.2
3,962,073	-		AO353_17990	0.87	+2.6
3,962,136	+				-0.7
3,962,177	+				+1.4
3,962,177	+				+0.6
3,962,184	+				-0.7
3,962,184	+				-0.4
3,962,184	+				-1.4
3,962,184	+				-0.9
3,962,185	-				+3.6
3,962,185	-				+0.1
3,962,185	-				-0.8
3,962,244	-				+0.8
3,962,244	-				+0.2
3,962,244	-				-0.7
3,962,250	+				+2.1
3,962,280	+				+0.8
3,962,289	-				-2.3
3,962,303	+				+3.2
3,962,303	+				+0.6
3,962,304	-				+0.6
3,962,324	+				+0.4
3,962,325	-				+0.3
3,962,392	+		AO353_17995	0.11	+2.2
3,962,393	-		AO353_17995	0.11	-0.9
3,962,506	+		AO353_17995	0.26	+0.4
3,962,545	+		AO353_17995	0.31	-0.9
3,962,545	+		AO353_17995	0.31	-2.2
3,962,546	-		AO353_17995	0.31	+0.6
3,962,546	-		AO353_17995	0.31	-0.4
3,962,546	-		AO353_17995	0.31	-0.7
3,962,578	+		AO353_17995	0.35	-1.8
3,962,632	+		AO353_17995	0.43	-1.9
3,962,633	-		AO353_17995	0.43	-1.4
3,962,633	-		AO353_17995	0.43	+0.3
3,962,656	+		AO353_17995	0.46	-0.9
3,962,656	+		AO353_17995	0.46	-0.9
3,962,656	+		AO353_17995	0.46	-1.4
3,962,656	+		AO353_17995	0.46	-0.4
3,962,656	+		AO353_17995	0.46	+0.4
3,962,656	+		AO353_17995	0.46	+3.0
3,962,657	-		AO353_17995	0.46	+1.4
3,962,657	-		AO353_17995	0.46	+0.6
3,962,657	-		AO353_17995	0.46	-2.1
3,962,716	+		AO353_17995	0.54	-0.7
3,962,716	+		AO353_17995	0.54	+0.1
3,962,830	+		AO353_17995	0.69	-0.3
3,962,830	+		AO353_17995	0.69	-0.4
3,962,830	+		AO353_17995	0.69	-0.7
3,962,830	+		AO353_17995	0.69	-0.4
3,962,830	+		AO353_17995	0.69	+0.1
3,962,831	-		AO353_17995	0.69	-1.4
3,962,831	-		AO353_17995	0.69	-0.8
3,962,987	+		AO353_17995	0.90	-0.7
3,962,988	-				+1.6
3,962,988	-				-0.7
3,963,210	+		AO353_18000	0.21	-0.3
3,963,210	+		AO353_18000	0.21	-1.2
3,963,210	+		AO353_18000	0.21	-1.5
3,963,210	+				+0.6
3,963,210	+		AO353_18000	0.21	-1.4
3,963,210	+		AO353_18000	0.21	-0.4
3,963,210	+		AO353_18000	0.21	-0.8
3,963,210	+		AO353_18000	0.21	-1.5
3,963,210	+		AO353_18000	0.21	+1.6
3,963,210	+		AO353_18000	0.21	+0.6
3,963,210	+		AO353_18000	0.21	+0.9
3,963,211	-		AO353_18000	0.21	+0.1
3,963,211	-		AO353_18000	0.21	-0.4
3,963,211	-		AO353_18000	0.21	-0.9
3,963,211	-		AO353_18000	0.21	+0.2
3,963,211	-		AO353_18000	0.21	-1.4
3,963,211	-		AO353_18000	0.21	-2.3
3,963,211	-		AO353_18000	0.21	-1.4
3,963,211	-		AO353_18000	0.21	+1.6
3,963,211	-		AO353_18000	0.21	-1.4
3,963,212	+		AO353_18000	0.22	-1.2
3,963,212	+		AO353_18000	0.22	-1.1
3,963,212	+		AO353_18000	0.22	+1.6
3,963,212	+		AO353_18000	0.22	+1.2
3,963,212	+		AO353_18000	0.22	+1.1
3,963,212	+		AO353_18000	0.22	-0.4
3,963,213	-		AO353_18000	0.22	+0.9
3,963,213	-				+0.6
3,963,213	-		AO353_18000	0.22	+0.9
3,963,213	-		AO353_18000	0.22	-0.2
3,963,213	-		AO353_18000	0.22	-2.3
3,963,213	-		AO353_18000	0.22	-0.0
3,963,215	+		AO353_18000	0.22	+0.1
3,963,215	+		AO353_18000	0.22	-0.8
3,963,216	-		AO353_18000	0.22	+0.9
3,963,216	-		AO353_18000	0.22	+0.1