Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_17855

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
3,931,566	+				+1.1
3,931,567	-				-2.4
3,931,629	+				-1.1
3,931,629	+				-2.0
3,931,629	+				+0.6
3,931,629	+				-0.5
3,931,629	+				-1.9
3,931,629	+				+1.1
3,931,629	+				+0.6
3,931,630	-				+2.1
3,931,630	-				-0.1
3,931,630	-				-0.8
3,931,630	-				-0.9
3,931,630	-				+1.2
3,931,630	-				+0.0
3,931,713	+				-1.2
3,931,714	-				+1.2
3,931,740	+				+0.4
3,931,741	-				-0.8
3,931,741	-				+1.4
3,931,754	+				-2.2
3,931,754	+				-0.8
3,931,755	-				-0.2
3,931,755	-				-2.1
3,931,785	+				-0.4
3,931,785	+				+2.0
3,931,785	+				+1.2
3,931,785	+				-0.2
3,931,785	+				-0.1
3,931,785	+				+0.0
3,931,785	+				-1.5
3,931,786	-				-1.2
3,931,786	-				+0.8
3,931,786	-				-0.4
3,931,786	-				-1.9
3,931,786	-				-1.5
3,931,786	-				-0.4
3,931,786	-				+0.5
3,931,786	-				-1.2
3,931,786	-				+0.6
3,931,786	-				+1.6
3,932,013	+		AO353_17850	0.34	+0.6
3,932,014	-		AO353_17850	0.34	-1.5
3,932,014	-		AO353_17850	0.34	-0.8
3,932,014	-		AO353_17850	0.34	-0.9
3,932,278	+		AO353_17850	0.74	+0.6
3,932,386	+				-1.2
3,932,426	-				-1.7
3,932,426	-				-0.4
3,932,426	-				+0.4
3,932,436	+				-1.2
3,932,436	+				-1.3
3,932,437	-				+0.1
3,932,437	-				-0.9
3,932,437	-				-0.5
3,932,437	-				-2.5
3,932,446	+				+0.2
3,932,446	+				-0.1
3,932,446	+				+0.1
3,932,446	+				-1.7
3,932,446	+				-1.0
3,932,446	+				+0.6
3,932,446	+				+0.2
3,932,447	-				+0.1
3,932,447	-				+2.6
3,932,447	-				-0.7
3,932,447	-				+1.1
3,932,447	-				-0.5
3,932,447	-				+1.2
3,932,455	+				+0.6
3,932,455	+				+0.6
3,932,455	+				-2.0
3,932,456	-				+0.6
3,932,456	-				-1.1
3,932,527	-				-0.8
3,932,527	-				+0.1
3,932,528	+				-0.4
3,932,528	+				+1.0
3,932,528	+				+0.8
3,932,528	+				-1.3
3,932,528	+				-1.5
3,932,528	+				-0.9
3,932,528	+				-1.2
3,932,528	+				+1.6
3,932,528	+				-0.2
3,932,528	+				-1.2
3,932,528	+				-0.7
3,932,528	+				-0.4
3,932,528	+				+0.6
3,932,528	+				-1.6
3,932,528	+				+0.6
3,932,528	+				-2.4
3,932,528	+				-0.9
3,932,528	+				-0.5
3,932,529	-				-0.5
3,932,529	-				-3.9
3,932,529	-				+0.2
3,932,529	-				+0.4
3,932,529	-				+0.9
3,932,529	-				-0.4
3,932,529	-				-0.7
3,932,529	-				-1.2
3,932,529	-				+0.8
3,932,529	-				-0.9
3,932,529	-				-0.9
3,932,529	-				+1.6
3,932,530	+				-0.2
3,932,530	+				+0.9
3,932,530	+				+0.2
3,932,530	+				+1.6
3,932,530	+				-0.7
3,932,530	+				+0.5
3,932,530	+				-0.7
3,932,530	+				-3.9
3,932,530	+				-0.9
3,932,530	+				-3.1
3,932,530	+				-3.1
3,932,530	+				-0.1
3,932,531	-				-0.6
3,932,531	-				-0.9
3,932,531	-				-0.3
3,932,531	-				-1.8
3,932,531	-				-0.8
3,932,531	-				-0.4
3,932,531	-				-0.9
3,932,531	-				-1.8
3,932,531	-				+0.1
3,932,531	-				+0.4
3,932,573	-				-1.5
3,932,679	-		AO353_17855	0.10	-1.4
3,932,679	-		AO353_17855	0.10	-1.4
3,932,891	+		AO353_17855	0.29	+0.5
3,932,892	-		AO353_17855	0.29	-1.2
3,933,018	-		AO353_17855	0.40	-0.7
3,933,089	+		AO353_17855	0.47	-2.4
3,933,152	+		AO353_17855	0.52	-1.2
3,933,603	-				+1.2
3,933,699	+				+1.1
3,933,699	+				+0.6
3,933,699	+				-0.7
3,933,699	+				+0.8
3,933,699	+				-1.4
3,933,700	-				+0.0
3,933,700	-				-0.4
3,933,700	-				-0.9
3,933,700	-				-0.4
3,933,708	+				-0.2
3,933,709	-				-1.0
3,933,709	-				+1.4
3,933,709	-				+1.0
3,933,709	-				-0.8
3,933,712	+				+0.2
3,933,712	+				-0.8
3,933,713	-				+2.2
3,933,713	-				+0.2
3,933,739	+		AO353_17860	0.16	-0.1
3,933,739	+		AO353_17860	0.16	-1.1
3,933,739	+		AO353_17860	0.16	-0.9
3,933,739	+		AO353_17860	0.16	-0.3
3,933,739	+		AO353_17860	0.16	-1.4
3,933,739	+		AO353_17860	0.16	-0.2
3,933,739	+		AO353_17860	0.16	-1.6
3,933,739	+		AO353_17860	0.16	-1.9
3,933,739	+		AO353_17860	0.16	-0.9
3,933,739	+		AO353_17860	0.16	-0.7
3,933,739	+		AO353_17860	0.16	+1.1
3,933,739	+		AO353_17860	0.16	-0.1
3,933,739	+		AO353_17860	0.16	+0.1
3,933,739	+		AO353_17860	0.16	+1.6
3,933,739	+		AO353_17860	0.16	-0.6
3,933,740	-		AO353_17860	0.17	+2.2
3,933,740	-		AO353_17860	0.17	-1.7
3,933,740	-		AO353_17860	0.17	+0.6
3,933,740	-		AO353_17860	0.17	-1.8
3,933,740	-		AO353_17860	0.17	-0.9
3,933,740	-		AO353_17860	0.17	+0.1
3,933,740	-		AO353_17860	0.17	+0.3
3,933,740	-		AO353_17860	0.17	+2.6
3,933,740	-		AO353_17860	0.17	-1.1
3,933,740	-		AO353_17860	0.17	-2.2
3,933,740	-		AO353_17860	0.17	+0.2
3,933,740	-		AO353_17860	0.17	-0.1
3,933,740	-		AO353_17860	0.17	+0.3
3,933,740	-		AO353_17860	0.17	+1.6
3,933,740	-		AO353_17860	0.17	-1.5
3,933,740	-		AO353_17860	0.17	+0.6
3,933,740	-		AO353_17860	0.17	-2.3
3,933,740	-		AO353_17860	0.17	-0.4
3,933,745	+		AO353_17860	0.18	+0.2
3,933,745	+		AO353_17860	0.18	-1.4
3,933,745	+		AO353_17860	0.18	-0.7
3,933,745	+		AO353_17860	0.18	-1.5
3,933,745	+		AO353_17860	0.18	+0.1
3,933,745	+		AO353_17860	0.18	+0.6
3,933,745	+		AO353_17860	0.18	+0.6
3,933,745	+		AO353_17860	0.18	-0.2
3,933,746	-		AO353_17860	0.19	-0.9
3,933,746	-		AO353_17860	0.19	+0.6
3,933,746	-		AO353_17860	0.19	-0.0
3,933,746	-		AO353_17860	0.19	+0.6
3,933,746	-		AO353_17860	0.19	+0.7
3,933,746	-		AO353_17860	0.19	-0.6
3,933,746	-		AO353_17860	0.19	-0.5
3,933,746	-		AO353_17860	0.19	+1.6
3,933,746	-		AO353_17860	0.19	+1.9
3,933,746	-		AO353_17860	0.19	+0.6
3,933,746	-		AO353_17860	0.19	-0.1
3,933,746	-		AO353_17860	0.19	+0.1
3,933,746	-		AO353_17860	0.19	-0.9
3,933,746	-		AO353_17860	0.19	+0.1
3,933,901	+		AO353_17860	0.71	-2.1
3,933,901	+		AO353_17860	0.71	-2.9
3,933,934	+		AO353_17860	0.83	-0.6
3,933,934	+		AO353_17860	0.83	+1.1
3,933,935	-		AO353_17860	0.83	+1.4
3,933,935	-		AO353_17860	0.83	-1.2
3,933,962	+				+0.5
3,933,962	+				+0.1
3,933,962	+				-0.1
3,933,963	-				-0.2
3,933,963	-				-0.5
3,933,969	+				-0.7
3,933,969	+				-1.8
3,933,969	+				+0.3
3,933,970	-				+1.6
3,933,970	-				-0.1
3,933,970	-				+0.4
3,933,970	-				+0.4
3,933,970	-				+0.1
3,933,970	-				-1.5
3,933,970	-				+1.6
3,933,970	-				-1.1
3,933,970	-				+0.6
3,933,970	-				-0.1
3,933,970	-				-1.5
3,933,970	-				+1.1
3,933,970	-				+0.2
3,933,970	-				+0.6
3,933,970	-				-1.2
3,933,970	-				-1.5
3,933,970	-				-1.3
3,933,995	+				+1.2
3,933,996	-				+0.4
3,934,036	-				-0.4
3,934,146	+				+0.1
3,934,146	+				-0.4
3,934,146	+				+1.1
3,934,146	+				-1.8
3,934,146	+				+1.6
3,934,146	+				+0.1
3,934,146	+				-1.2
3,934,146	+				-1.9
3,934,146	+				-1.4
3,934,146	+				-0.7
3,934,146	+				+0.5
3,934,146	+				+0.9
3,934,146	+				+1.6
3,934,147	-				-0.2
3,934,147	-				-1.9
3,934,147	-				+1.6
3,934,147	-				-0.9
3,934,147	-				-0.7
3,934,147	-				-0.7
3,934,147	-				+1.0
3,934,147	-				-1.7
3,934,147	-				-1.1
3,934,147	-				-1.1
3,934,147	-				+0.1
3,934,147	-				-2.4
3,934,147	-				+0.6
3,934,147	-				-1.4
3,934,147	-				+0.1
3,934,147	-				-0.1
3,934,147	-				-1.8
3,934,147	-				-3.1
3,934,147	-				-0.5
3,934,148	+				-1.2
3,934,148	+				+2.1
3,934,148	+				+0.6
3,934,148	+				-0.7
3,934,148	+				-1.4
3,934,148	+				-0.2
3,934,149	-				-0.4
3,934,149	-				-0.4
3,934,149	-				-0.4
3,934,149	-				-2.3
3,934,149	-				-2.5
3,934,188	+				+1.9
3,934,188	+				+1.0
3,934,188	+				+0.6
3,934,188	+				-0.1
3,934,189	-				-0.4
3,934,327	+		AO353_17865	0.23	+0.1
3,934,327	+		AO353_17865	0.23	-0.7
3,934,327	+		AO353_17865	0.23	-2.3
3,934,327	+		AO353_17865	0.23	-1.5
3,934,327	+		AO353_17865	0.23	-2.2
3,934,327	+		AO353_17865	0.23	+0.5
3,934,327	+		AO353_17865	0.23	-0.1
3,934,327	+		AO353_17865	0.23	+0.1
3,934,328	-		AO353_17865	0.23	+0.8
3,934,328	-		AO353_17865	0.23	-0.3
3,934,409	+		AO353_17865	0.32	+1.6
3,934,409	+		AO353_17865	0.32	+0.1
3,934,409	+		AO353_17865	0.32	+0.8
3,934,409	+		AO353_17865	0.32	+0.4
3,934,409	+		AO353_17865	0.32	+0.6
3,934,409	+		AO353_17865	0.32	+2.0
3,934,409	+		AO353_17865	0.32	-0.5
3,934,409	+		AO353_17865	0.32	+0.1
3,934,409	+		AO353_17865	0.32	+1.6
3,934,409	+		AO353_17865	0.32	-1.5
3,934,409	+		AO353_17865	0.32	-0.8
3,934,409	+		AO353_17865	0.32	-1.2
3,934,410	-		AO353_17865	0.32	+0.9
3,934,410	-		AO353_17865	0.32	-0.9
3,934,410	-		AO353_17865	0.32	+1.6
3,934,410	-		AO353_17865	0.32	-1.9
3,934,410	-		AO353_17865	0.32	-0.8
3,934,410	-		AO353_17865	0.32	+0.2
3,934,410	-		AO353_17865	0.32	+1.1
3,934,410	-		AO353_17865	0.32	-1.2
3,934,421	+		AO353_17865	0.33	+0.1
3,934,421	+		AO353_17865	0.33	-1.7
3,934,421	+		AO353_17865	0.33	+0.1
3,934,421	+		AO353_17865	0.33	-0.4
3,934,421	+		AO353_17865	0.33	-0.7
3,934,422	-		AO353_17865	0.33	+1.1
3,934,422	-		AO353_17865	0.33	-0.2
3,934,422	-		AO353_17865	0.33	-0.7
3,934,422	-		AO353_17865	0.33	-2.1
3,934,422	-		AO353_17865	0.33	-1.4
3,934,422	-		AO353_17865	0.33	+0.6
3,934,422	-		AO353_17865	0.33	-0.1
3,934,422	-		AO353_17865	0.33	-0.4
3,934,422	-		AO353_17865	0.33	+1.1
3,934,606	+				+0.6
3,934,682	+		AO353_17865	0.61	+0.6
3,934,682	+		AO353_17865	0.61	+0.5
3,934,682	+				-0.8
3,934,682	+		AO353_17865	0.61	+0.1
3,934,682	+		AO353_17865	0.61	-0.7
3,934,683	-		AO353_17865	0.61	-0.8
3,934,683	-		AO353_17865	0.61	+0.8
3,934,683	-		AO353_17865	0.61	+2.1
3,934,683	-		AO353_17865	0.61	+0.8
3,934,683	-		AO353_17865	0.61	-0.8