Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_12575

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
2,769,700	+		AO353_12560	0.73	+1.5
2,769,706	+		AO353_12560	0.74	-0.3
2,769,706	+		AO353_12560	0.74	+0.5
2,769,707	-		AO353_12560	0.75	-0.0
2,769,707	-		AO353_12560	0.75	-2.4
2,769,751	+		AO353_12560	0.84	+1.5
2,769,752	-		AO353_12560	0.84	-1.5
2,769,752	-		AO353_12560	0.84	-2.3
2,769,752	-		AO353_12560	0.84	-1.6
2,769,752	-		AO353_12560	0.84	-0.5
2,769,752	-		AO353_12560	0.84	-1.3
2,769,854	+				+0.5
2,769,854	+				+0.7
2,769,855	-				-2.5
2,769,855	-				-0.0
2,769,855	-				+0.2
2,769,855	-				-1.9
2,769,983	+		AO353_12565	0.34	-0.0
2,769,983	+		AO353_12565	0.34	-1.5
2,769,984	-		AO353_12565	0.34	+0.4
2,769,984	-		AO353_12565	0.34	-0.0
2,770,060	+		AO353_12565	0.50	-2.4
2,770,061	-		AO353_12565	0.50	-1.5
2,770,142	+		AO353_12565	0.68	-1.3
2,770,143	-		AO353_12565	0.68	-0.8
2,770,291	+				-1.0
2,770,291	+				-1.3
2,770,333	+		AO353_12570	0.12	-0.7
2,770,333	+		AO353_12570	0.12	+0.1
2,770,406	+		AO353_12570	0.31	-0.0
2,770,406	+		AO353_12570	0.31	-0.0
2,770,407	-		AO353_12570	0.31	+1.5
2,770,407	-		AO353_12570	0.31	-2.5
2,770,517	+		AO353_12570	0.59	-1.5
2,770,518	-		AO353_12570	0.59	+0.5
2,770,518	-		AO353_12570	0.59	-2.4
2,770,638	+		AO353_12570	0.90	-1.6
2,770,639	-				-1.6
2,770,639	-				+0.1
2,770,639	-				+0.2
2,770,639	-				-1.8
2,770,639	-				+0.5
2,770,639	-				-0.8
2,770,676	+				+0.5
2,770,676	+				+1.0
2,770,676	+				-2.4
2,770,677	-				-0.8
2,770,677	-				-0.8
2,770,677	-				+2.5
2,770,965	+		AO353_12575	0.54	-1.8
2,770,965	+		AO353_12575	0.54	+0.5
2,770,965	+		AO353_12575	0.54	+1.5
2,770,965	+		AO353_12575	0.54	-0.0
2,770,965	+		AO353_12575	0.54	+1.5
2,770,965	+		AO353_12575	0.54	-1.8
2,770,966	-		AO353_12575	0.54	+1.9
2,770,966	-		AO353_12575	0.54	+1.5
2,770,987	+		AO353_12575	0.58	+0.5
2,771,074	-		AO353_12575	0.74	+0.5
2,771,074	-		AO353_12575	0.74	+1.0
2,771,074	-		AO353_12575	0.74	+1.1
2,771,114	+		AO353_12575	0.81	+1.5
2,771,115	-		AO353_12575	0.81	+0.1
2,771,321	-		AO353_12580	0.13	-0.7
2,771,321	-		AO353_12580	0.13	-1.3
2,771,455	+		AO353_12580	0.28	+0.5
2,772,079	+				-0.9
2,772,079	+				-0.0
2,772,079	+				+1.5
2,772,079	+				-0.2
2,772,080	-				-0.0
2,772,147	+				-0.3
2,772,148	-				+0.5
2,772,188	+		AO353_12585	0.11	+1.5
2,772,188	+		AO353_12585	0.11	+1.5
2,772,189	-		AO353_12585	0.11	+1.5