Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_08780

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
1,929,037	+				+1.5
1,929,054	+				+2.1
1,929,054	+				+0.5
1,929,055	-				-0.4
1,929,055	-				-0.3
1,929,060	+				+1.5
1,929,061	-				+2.1
1,929,076	+				+0.5
1,929,076	+				-0.0
1,929,076	+				-0.5
1,929,076	+				-0.5
1,929,076	+				+1.5
1,929,077	-				-1.0
1,929,077	-				+0.3
1,929,077	-				-0.0
1,929,077	-				+0.6
1,929,077	-				-0.3
1,929,077	-				-0.0
1,929,077	-				+0.1
1,929,077	-				+0.1
1,929,081	+				-0.8
1,929,081	+				-0.0
1,929,081	+				+1.5
1,929,082	-				-2.8
1,929,082	-				+1.5
1,929,082	-				-0.5
1,929,082	-				+1.4
1,929,082	-				+2.5
1,929,082	-				-0.0
1,929,082	-				+0.5
1,929,082	-				+1.1
1,929,082	-				-0.5
1,929,082	-				+2.5
1,929,082	-				+1.0
1,929,082	-				+1.5
1,929,082	-				-0.1
1,929,104	+				-0.8
1,929,104	+				+0.5
1,929,105	-				-0.3
1,929,105	-				+0.5
1,929,105	-				-0.6
1,929,105	-				+1.3
1,929,107	+				+1.5
1,929,107	+				-1.9
1,929,107	+				-1.0
1,929,108	-				+0.4
1,929,108	-				-1.0
1,929,108	-				-0.2
1,929,108	-				+1.5
1,929,108	-				+1.5
1,929,125	+				+1.5
1,929,157	+				+0.8
1,929,157	+				-1.5
1,929,157	+				-1.8
1,929,157	+				-0.0
1,929,158	-				+1.5
1,929,158	-				+0.5
1,929,158	-				+0.8
1,929,158	-				-0.3
1,929,158	-				+1.0
1,929,158	-				-0.5
1,929,158	-				-0.9
1,929,158	-				-1.3
1,929,158	-				+1.2
1,929,158	-				+0.2
1,929,158	-				-1.0
1,929,158	-				+1.0
1,929,158	-				-3.4
1,929,204	+		AO353_08770	0.22	+1.5
1,929,204	+		AO353_08770	0.22	-0.9
1,929,204	+		AO353_08770	0.22	-0.0
1,929,204	+		AO353_08770	0.22	-0.0
1,929,204	+		AO353_08770	0.22	+0.7
1,929,204	+		AO353_08770	0.22	+1.5
1,929,204	+		AO353_08770	0.22	+1.5
1,929,204	+		AO353_08770	0.22	+0.6
1,929,204	+		AO353_08770	0.22	+2.0
1,929,204	+		AO353_08770	0.22	-0.5
1,929,204	+		AO353_08770	0.22	-0.5
1,929,204	+		AO353_08770	0.22	+0.5
1,929,204	+		AO353_08770	0.22	+1.5
1,929,204	+		AO353_08770	0.22	+1.5
1,929,204	+		AO353_08770	0.22	+0.5
1,929,204	+		AO353_08770	0.22	+2.9
1,929,205	-		AO353_08770	0.22	+0.5
1,929,205	-		AO353_08770	0.22	+0.1
1,929,205	-		AO353_08770	0.22	+1.1
1,929,205	-				+1.5
1,929,205	-		AO353_08770	0.22	-0.0
1,929,205	-		AO353_08770	0.22	-0.0
1,929,205	-		AO353_08770	0.22	+1.5
1,929,205	-		AO353_08770	0.22	+2.5
1,929,205	-		AO353_08770	0.22	+0.7
1,929,205	-		AO353_08770	0.22	+1.0
1,929,205	-		AO353_08770	0.22	+0.5
1,929,205	-		AO353_08770	0.22	+1.0
1,929,205	-		AO353_08770	0.22	+1.0
1,929,208	+		AO353_08770	0.24	+0.0
1,929,226	+		AO353_08770	0.32	+1.2
1,929,226	+		AO353_08770	0.32	+1.0
1,929,226	+		AO353_08770	0.32	+2.5
1,929,226	+		AO353_08770	0.32	+1.5
1,929,226	+		AO353_08770	0.32	+1.9
1,929,226	+		AO353_08770	0.32	-1.5
1,929,226	+		AO353_08770	0.32	-0.5
1,929,226	+		AO353_08770	0.32	+0.8
1,929,227	-		AO353_08770	0.33	-0.5
1,929,227	-		AO353_08770	0.33	+0.2
1,929,227	-		AO353_08770	0.33	-0.5
1,929,227	-		AO353_08770	0.33	-0.2
1,929,227	-		AO353_08770	0.33	+1.0
1,929,227	-		AO353_08770	0.33	+1.3
1,929,227	-		AO353_08770	0.33	-0.0
1,929,227	-		AO353_08770	0.33	-0.3
1,929,227	-		AO353_08770	0.33	-1.2
1,929,227	-		AO353_08770	0.33	+4.1
1,929,227	-		AO353_08770	0.33	+0.2
1,929,227	-		AO353_08770	0.33	+3.1
1,929,227	-		AO353_08770	0.33	+1.0
1,929,246	+		AO353_08770	0.42	+1.5
1,929,246	+		AO353_08770	0.42	-0.9
1,929,246	+		AO353_08770	0.42	-1.0
1,929,246	+		AO353_08770	0.42	+0.5
1,929,246	+		AO353_08770	0.42	-1.6
1,929,246	+		AO353_08770	0.42	-1.7
1,929,246	+		AO353_08770	0.42	-0.5
1,929,246	+		AO353_08770	0.42	-1.5
1,929,247	-		AO353_08770	0.42	-0.3
1,929,247	-		AO353_08770	0.42	+0.5
1,929,247	-		AO353_08770	0.42	-1.8
1,929,247	-		AO353_08770	0.42	-0.8
1,929,247	-		AO353_08770	0.42	-0.4
1,929,247	-		AO353_08770	0.42	+0.7
1,929,247	-		AO353_08770	0.42	-0.0
1,929,247	-		AO353_08770	0.42	+1.5
1,929,247	-		AO353_08770	0.42	-0.9
1,929,249	+		AO353_08770	0.43	-0.8
1,929,249	+		AO353_08770	0.43	-0.0
1,929,249	+		AO353_08770	0.43	-1.8
1,929,249	+		AO353_08770	0.43	+0.5
1,929,249	+		AO353_08770	0.43	+0.5
1,929,249	+		AO353_08770	0.43	+2.1
1,929,249	+		AO353_08770	0.43	+2.5
1,929,249	+		AO353_08770	0.43	+0.4
1,929,249	+		AO353_08770	0.43	+1.5
1,929,249	+		AO353_08770	0.43	+2.5
1,929,250	-		AO353_08770	0.44	+3.1
1,929,250	-		AO353_08770	0.44	+0.3
1,929,250	-		AO353_08770	0.44	-0.0
1,929,250	-		AO353_08770	0.44	-0.2
1,929,250	-		AO353_08770	0.44	+0.5
1,929,250	-		AO353_08770	0.44	+0.3
1,929,250	-		AO353_08770	0.44	+0.8
1,929,250	-		AO353_08770	0.44	-1.5
1,929,250	-		AO353_08770	0.44	-0.0
1,929,250	-		AO353_08770	0.44	-0.3
1,929,250	-		AO353_08770	0.44	+0.5
1,929,316	+		AO353_08770	0.75	-1.4
1,929,317	-		AO353_08770	0.76	-0.5
1,929,317	-		AO353_08770	0.76	-1.5
1,929,378	+				-0.0
1,929,378	+				-0.6
1,929,378	+				-0.9
1,929,378	+				-0.5
1,929,378	+				-0.8
1,929,378	+				-0.2
1,929,378	+				-1.0
1,929,379	-				-1.3
1,929,379	-				-0.2
1,929,384	+				+1.0
1,929,384	+				-0.5
1,929,409	+		AO353_08775	0.14	-1.2
1,929,409	+		AO353_08775	0.14	+0.9
1,929,409	+		AO353_08775	0.14	+0.2
1,929,410	-		AO353_08775	0.14	+0.1
1,929,701	+				+2.1
1,929,703	+				-2.6
1,929,703	+				-1.7
1,929,704	-				-1.7
1,929,704	-				-1.0
1,929,704	-				-1.3
1,929,802	+				-0.8
1,929,816	+				-3.1
1,929,823	+				+0.3
1,929,823	+				+1.1
1,929,823	+				-1.8
1,929,823	+				-1.3
1,929,823	+				-2.7
1,929,823	+				+1.0
1,929,823	+				-3.2
1,929,823	+				-0.4
1,929,824	-				-1.5
1,929,824	-				-1.6
1,929,824	-				-0.9
1,929,824	-				-1.0
1,929,824	-				+1.0
1,929,824	-				-0.3
1,929,824	-				-1.2
1,929,861	+				-0.8
1,929,861	+				+0.4
1,929,862	-				-1.9
1,929,890	+				-0.9
1,929,890	+				+0.4
1,929,890	+				-1.8
1,929,890	+				-3.1
1,929,890	+				+0.3
1,929,890	+				+0.3
1,929,890	+				-2.5
1,929,890	+				-0.5
1,929,890	+				+0.2
1,929,890	+				+2.2
1,929,890	+				-1.9
1,929,890	+				-1.0
1,929,890	+				-0.0
1,929,891	-				-2.6
1,929,891	-				-1.6
1,929,891	-				-1.0
1,929,891	-				-1.2
1,929,891	-				+0.8
1,929,891	-				-0.0
1,929,891	-				+1.5
1,929,891	-				+1.0
1,929,891	-				-2.2
1,929,891	-				-0.5
1,929,891	-				+1.5
1,929,891	-				+0.5
1,929,891	-				-2.4
1,929,891	-				-1.3
1,929,891	-				+0.8
1,929,891	-				-1.3
1,929,891	-				+1.5
1,929,891	-				-1.5
1,929,891	-				+1.0
1,929,891	-				-1.7
1,929,892	+				-1.0
1,929,892	+				-0.0
1,929,892	+				+0.2
1,929,892	+				-0.8
1,929,892	+				-2.3
1,929,892	+				-0.5
1,929,892	+				-1.5
1,929,892	+				+0.4
1,929,893	-				-0.0
1,929,893	-				-1.6
1,929,893	-				+0.8
1,929,931	+				-1.3
1,929,931	+				+0.3
1,929,931	+				-0.8
1,929,931	+				+1.5
1,929,931	+				+1.5
1,929,931	+				+1.1
1,929,931	+				-1.6
1,929,931	+				+0.5
1,929,931	+				+1.5
1,929,931	+				+0.1
1,930,084	+		AO353_08780	0.17	+1.5
1,930,138	+		AO353_08780	0.26	-0.0
1,930,138	+		AO353_08780	0.26	-0.8
1,930,139	-		AO353_08780	0.26	-2.9
1,930,139	-		AO353_08780	0.26	+1.5
1,930,210	+		AO353_08780	0.38	+1.5
1,930,210	+		AO353_08780	0.38	-0.8
1,930,210	+		AO353_08780	0.38	-2.8
1,930,210	+		AO353_08780	0.38	+2.5
1,930,210	+		AO353_08780	0.38	-0.5
1,930,211	-		AO353_08780	0.38	+0.5
1,930,211	-		AO353_08780	0.38	+0.5
1,930,211	-		AO353_08780	0.38	+0.5
1,930,211	-		AO353_08780	0.38	-1.3
1,930,211	-		AO353_08780	0.38	+0.5
1,930,211	-		AO353_08780	0.38	-0.8
1,930,211	-		AO353_08780	0.38	-1.3
1,930,211	-		AO353_08780	0.38	+1.5
1,930,211	-		AO353_08780	0.38	-1.5
1,930,220	+		AO353_08780	0.40	+0.5
1,930,221	-		AO353_08780	0.40	-1.9
1,930,326	+		AO353_08780	0.57	+0.5
1,930,327	-		AO353_08780	0.57	-0.5
1,930,420	+		AO353_08780	0.73	+0.3
1,930,420	+		AO353_08780	0.73	-0.5
1,930,420	+		AO353_08780	0.73	-1.0
1,930,420	+		AO353_08780	0.73	+0.5
1,930,420	+		AO353_08780	0.73	-0.3
1,930,420	+		AO353_08780	0.73	-0.0
1,930,421	-		AO353_08780	0.73	+2.5
1,930,421	-		AO353_08780	0.73	-1.6
1,930,421	-		AO353_08780	0.73	-1.6
1,930,421	-		AO353_08780	0.73	-1.0
1,930,421	-		AO353_08780	0.73	-1.6
1,930,421	-		AO353_08780	0.73	-2.2
1,930,421	-		AO353_08780	0.73	+1.5
1,930,421	-		AO353_08780	0.73	-1.5
1,930,438	+		AO353_08780	0.76	+0.5
1,930,439	-		AO353_08780	0.76	-1.9
1,930,535	+				-0.8
1,930,535	+				-1.3
1,930,536	-				-0.5
1,930,536	-				-1.3
1,930,536	-				+0.5
1,930,536	-				+1.5
1,930,536	-				+1.5
1,930,570	+				-0.5
1,930,570	+				+2.5
1,930,570	+				+1.0
1,930,571	-				+0.2
1,930,571	-				-1.3
1,930,571	-				+0.5
1,930,571	-				+0.7
1,930,571	-				+1.8
1,930,582	+				-0.8
1,930,582	+				+0.5
1,930,582	+				-0.5
1,930,582	+				+0.5
1,930,582	+				-3.0
1,930,582	+				-0.9
1,930,582	+				-0.0
1,930,583	-				+0.1
1,930,583	-				-1.5
1,930,583	-				-1.2
1,930,583	-				+1.2
1,930,583	-				-0.4
1,930,583	-				-1.0
1,930,629	-				+0.9
1,930,645	+				+0.8
1,930,716	-				-2.4
1,930,716	-				-0.7
1,930,716	-				+1.3
1,930,726	+				-0.5
1,930,727	-				+0.2
1,930,765	+				+0.3
1,930,765	+				-0.3
1,930,765	+				-1.3
1,930,765	+				-0.8
1,930,765	+				-0.0
1,930,766	-				+0.2
1,930,766	-				-0.3
1,930,766	-				+0.2
1,930,766	-				-0.0
1,930,839	+				+0.2
1,930,840	-				-0.5
1,930,864	+				-1.8
1,930,864	+				-0.3
1,930,864	+				-0.6
1,930,865	-				-0.5
1,930,865	-				-1.0
1,930,865	-				-0.2
1,930,936	+				-0.5
1,930,991	+				-0.9
1,930,991	+				-1.8
1,930,999	+				+0.5
1,931,000	-				+1.2
1,931,078	+		AO353_08785	0.21	-1.0
1,931,078	+		AO353_08785	0.21	+0.9
1,931,078	+		AO353_08785	0.21	-1.0
1,931,079	-		AO353_08785	0.21	-1.0
1,931,079	-		AO353_08785	0.21	+0.5
1,931,079	-		AO353_08785	0.21	-0.9
1,931,079	-		AO353_08785	0.21	+0.0
1,931,079	-		AO353_08785	0.21	+1.0
1,931,079	-		AO353_08785	0.21	+2.5
1,931,132	+		AO353_08785	0.33	-1.2
1,931,132	+		AO353_08785	0.33	-2.3
1,931,132	+		AO353_08785	0.33	-0.8
1,931,132	+		AO353_08785	0.33	+1.0
1,931,133	-		AO353_08785	0.33	-1.5
1,931,133	-		AO353_08785	0.33	+0.5
1,931,133	-		AO353_08785	0.33	+0.5
1,931,228	+		AO353_08785	0.54	-0.8
1,931,228	+		AO353_08785	0.54	+1.5
1,931,228	+		AO353_08785	0.54	+2.5
1,931,228	+		AO353_08785	0.54	-1.0
1,931,229	-		AO353_08785	0.54	-0.8
1,931,229	-		AO353_08785	0.54	-2.7
1,931,229	-		AO353_08785	0.54	-0.5
1,931,229	-		AO353_08785	0.54	-1.8
1,931,229	-		AO353_08785	0.54	-0.5
1,931,321	+		AO353_08785	0.75	+0.2
1,931,321	+		AO353_08785	0.75	-1.8
1,931,322	-		AO353_08785	0.75	+0.8
1,931,322	-		AO353_08785	0.75	-0.2
1,931,432	+				-0.8
1,931,433	-				+1.5
1,931,433	-				-1.8
1,931,436	+				+0.3
1,931,437	-				-1.1
1,931,437	-				-0.5
1,931,529	+				+0.5