Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_08695

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
1,909,778	+		AO353_08690	0.45	-1.6
1,909,778	+		AO353_08690	0.45	+0.2
1,909,888	+		AO353_08690	0.54	-0.0
1,909,888	+		AO353_08690	0.54	-1.0
1,909,888	+		AO353_08690	0.54	+0.1
1,909,889	-		AO353_08690	0.54	-0.6
1,909,889	-		AO353_08690	0.54	-0.5
1,909,894	+		AO353_08690	0.55	+0.5
1,909,894	+		AO353_08690	0.55	-2.3
1,909,894	+		AO353_08690	0.55	+1.0
1,909,894	+		AO353_08690	0.55	-0.8
1,909,895	-		AO353_08690	0.55	+2.3
1,909,895	-		AO353_08690	0.55	+1.5
1,909,895	-		AO353_08690	0.55	+1.5
1,909,895	-		AO353_08690	0.55	-0.6
1,910,198	+		AO353_08690	0.81	+0.5
1,910,449	+				-1.9
1,910,449	+				-0.8
1,910,449	+				+0.1
1,910,449	+				-1.3
1,910,449	+				-1.5
1,910,449	+				-1.3
1,910,449	+				-0.5
1,910,449	+				+1.0
1,910,450	-				-0.9
1,910,450	-				+0.7
1,910,450	-				-0.5
1,910,450	-				-0.0
1,910,450	-				-0.5
1,910,450	-				-0.7
1,910,450	-				+0.1
1,910,450	-				-0.0
1,910,450	-				+1.5
1,910,471	+				-0.7
1,910,471	+				-0.5
1,910,472	-				-1.8
1,910,472	-				+0.3
1,910,472	-				-0.5
1,910,472	-				-0.8
1,910,488	+				-0.5
1,910,488	+				+0.3
1,910,488	+				-2.0
1,910,489	-				-1.1
1,910,489	-				+0.5
1,910,489	-				-2.5
1,910,489	-				+2.1
1,910,494	+				-0.6
1,910,495	-				-1.2
1,910,495	-				+0.1
1,910,506	+				-0.0
1,910,506	+				-1.5
1,910,506	+				-1.3
1,910,506	+				+0.5
1,910,506	+				+0.1
1,910,506	+				+1.5
1,910,506	+				-0.2
1,910,506	+				-0.5
1,910,507	-				+1.5
1,910,507	-				+1.5
1,910,507	-				-0.8
1,910,507	-				+1.5
1,910,507	-				-1.0
1,910,642	+				-1.2
1,910,695	+				+0.8
1,910,696	-				+1.3
1,910,696	-				-1.5
1,910,827	+		AO353_08695	0.19	+0.5
1,910,827	+		AO353_08695	0.19	+0.7
1,910,828	-		AO353_08695	0.19	+1.0
1,911,151	-		AO353_08695	0.42	+0.0
1,911,192	+		AO353_08695	0.45	+1.1
1,911,192	+		AO353_08695	0.45	-0.8
1,911,192	+		AO353_08695	0.45	+0.7
1,911,192	+		AO353_08695	0.45	-1.1
1,911,192	+		AO353_08695	0.45	-0.0
1,911,192	+		AO353_08695	0.45	-1.0
1,911,192	+		AO353_08695	0.45	-0.0
1,911,192	+		AO353_08695	0.45	+1.0
1,911,192	+		AO353_08695	0.45	+0.3
1,911,192	+		AO353_08695	0.45	+0.8
1,911,192	+		AO353_08695	0.45	-0.3
1,911,192	+		AO353_08695	0.45	+2.9
1,911,193	-		AO353_08695	0.45	+0.2
1,911,193	-		AO353_08695	0.45	+0.5
1,911,193	-		AO353_08695	0.45	+1.0
1,911,193	-		AO353_08695	0.45	-0.0
1,911,193	-		AO353_08695	0.45	-1.6
1,911,193	-		AO353_08695	0.45	+1.3
1,911,193	-		AO353_08695	0.45	-0.8
1,911,193	-		AO353_08695	0.45	+1.5
1,911,196	+		AO353_08695	0.46	-1.2
1,911,196	+		AO353_08695	0.46	+1.1
1,911,196	+		AO353_08695	0.46	-0.5
1,911,196	+		AO353_08695	0.46	+1.5
1,911,196	+		AO353_08695	0.46	+1.5
1,911,196	+		AO353_08695	0.46	-0.3
1,911,196	+		AO353_08695	0.46	+0.5
1,911,196	+		AO353_08695	0.46	+3.5
1,911,196	+		AO353_08695	0.46	-1.3
1,911,197	-		AO353_08695	0.46	+0.8
1,911,197	-		AO353_08695	0.46	-0.0
1,911,197	-		AO353_08695	0.46	-0.6
1,911,197	-		AO353_08695	0.46	-0.5
1,911,197	-		AO353_08695	0.46	-0.6
1,911,197	-		AO353_08695	0.46	+0.5
1,911,197	-		AO353_08695	0.46	-2.3
1,911,197	-		AO353_08695	0.46	+0.0
1,911,197	-		AO353_08695	0.46	+1.5
1,911,307	+		AO353_08695	0.54	+1.0
1,911,646	-		AO353_08695	0.79	+2.3
1,911,741	+		AO353_08695	0.85	+1.8
1,911,741	+		AO353_08695	0.85	-0.1
1,911,741	+		AO353_08695	0.85	+1.2
1,911,811	+				-0.6
1,911,811	+				+1.5
1,911,812	-				+0.1
1,911,812	-				-1.0
1,911,901	+				+0.0
1,911,901	+				-0.4
1,911,901	+				-0.6
1,911,901	+				+1.5
1,911,901	+				+1.5
1,911,901	+				-0.8
1,911,902	-				-0.0
1,911,902	-				-1.0
1,911,902	-				+0.6
1,911,902	-				-0.0
1,911,902	-				-0.5
1,911,902	-				-1.1
1,911,902	-				-1.9
1,911,933	+				-1.0
1,911,933	+				-0.4
1,911,933	+				-0.7
1,911,933	+				+1.5
1,911,933	+				+2.1
1,911,933	+				+2.3
1,911,933	+				+0.5
1,911,933	+				-1.9
1,911,933	+				-0.2
1,911,933	+				+0.2
1,911,933	+				-0.7
1,911,933	+				+1.0
1,911,934	-				+0.3
1,911,934	-				-1.5
1,911,934	-				-2.7
1,911,934	-				-1.0
1,911,937	+				+0.5
1,911,937	+				-2.5
1,911,937	+				+3.1
1,911,937	+				-2.3
1,911,937	+				-0.6
1,911,937	+				-0.6
1,911,937	+				-1.3
1,911,937	+				+2.9
1,911,937	+				+0.9
1,911,937	+				-2.3
1,911,937	+				-0.8
1,911,937	+				-0.5
1,911,937	+				+0.1
1,911,937	+				-2.3
1,911,937	+				+2.0
1,911,937	+				+1.5
1,911,937	+				-0.9
1,911,937	+				-1.3
1,911,937	+				-0.0
1,911,937	+				+0.5
1,911,938	-				-0.3
1,911,938	-				-0.2
1,911,938	-				-1.0
1,911,938	-				+0.8
1,911,938	-				-0.6
1,911,938	-				-0.3
1,911,938	-				-1.0
1,911,938	-				-0.3
1,911,938	-				-0.9
1,911,938	-				-0.0
1,911,961	-				-0.2
1,911,961	-				-0.5
1,911,961	-				-2.2
1,911,961	-				-2.0
1,911,961	-				+1.5
1,911,961	-				+1.5
1,912,038	+				+0.1
1,912,039	-				+1.3
1,912,039	-				-2.5
1,912,039	-				-0.8
1,912,039	-				+0.5
1,912,237	+		AO353_08700	0.24	+1.0
1,912,237	+		AO353_08700	0.24	-0.8
1,912,237	+		AO353_08700	0.24	-0.5
1,912,237	+		AO353_08700	0.24	+0.4
1,912,237	+		AO353_08700	0.24	-0.2
1,912,238	-		AO353_08700	0.24	-2.2
1,912,238	-		AO353_08700	0.24	+1.5
1,912,238	-		AO353_08700	0.24	+0.5
1,912,238	-		AO353_08700	0.24	-1.3
1,912,238	-		AO353_08700	0.24	-0.8
1,912,238	-		AO353_08700	0.24	+0.2
1,912,297	+		AO353_08700	0.37	-0.0
1,912,297	+		AO353_08700	0.37	+0.2
1,912,297	+		AO353_08700	0.37	+0.5
1,912,297	+		AO353_08700	0.37	-1.9
1,912,297	+		AO353_08700	0.37	-0.5
1,912,297	+		AO353_08700	0.37	+1.5
1,912,297	+		AO353_08700	0.37	+0.2
1,912,297	+		AO353_08700	0.37	-0.2
1,912,297	+		AO353_08700	0.37	+0.5
1,912,297	+		AO353_08700	0.37	-0.8
1,912,297	+		AO353_08700	0.37	+0.8
1,912,297	+		AO353_08700	0.37	-0.0
1,912,297	+		AO353_08700	0.37	-0.8
1,912,297	+		AO353_08700	0.37	-1.4
1,912,298	-		AO353_08700	0.37	-1.0
1,912,298	-		AO353_08700	0.37	-0.7
1,912,298	-		AO353_08700	0.37	+0.7
1,912,298	-		AO353_08700	0.37	+0.5
1,912,298	-		AO353_08700	0.37	-1.3
1,912,298	-		AO353_08700	0.37	-0.8
1,912,298	-		AO353_08700	0.37	+0.7
1,912,298	-		AO353_08700	0.37	-0.8
1,912,298	-		AO353_08700	0.37	+1.5
1,912,298	-		AO353_08700	0.37	+0.5
1,912,298	-		AO353_08700	0.37	+1.5
1,912,298	-		AO353_08700	0.37	-0.6
1,912,298	-		AO353_08700	0.37	+0.8
1,912,298	-		AO353_08700	0.37	-1.3
1,912,298	-		AO353_08700	0.37	-0.9
1,912,298	-		AO353_08700	0.37	-1.0
1,912,298	-		AO353_08700	0.37	-2.8
1,912,298	-		AO353_08700	0.37	-1.6
1,912,298	-		AO353_08700	0.37	+0.5
1,912,446	-		AO353_08700	0.68	-0.8
1,912,473	-		AO353_08700	0.74	-1.7
1,912,573	+				+0.5
1,912,573	+				-2.9
1,912,574	-				-1.5
1,912,574	-				+0.4
1,912,616	+				+0.2
1,912,651	+				-1.3
1,912,651	+				-0.8
1,912,652	-				-0.8
1,912,662	+				-1.6
1,912,662	+				+0.4
1,912,662	+				-0.3
1,912,662	+				-0.5
1,912,662	+				+0.1
1,912,662	+				-0.9
1,912,662	+				-2.4
1,912,662	+				-0.5
1,912,662	+				-2.9
1,912,662	+				+0.2
1,912,662	+				-0.5
1,912,662	+				-0.5
1,912,662	+				-0.2
1,912,662	+				+0.4
1,912,662	+				-1.0
1,912,662	+				-0.5
1,912,662	+				+0.5
1,912,662	+				+0.1
1,912,662	+				-0.8
1,912,662	+				+0.2
1,912,663	-				+0.5
1,912,663	-				+0.5
1,912,663	-				+1.5
1,912,663	-				+1.5
1,912,663	-				-1.3
1,912,663	-				+0.3
1,912,663	-				-0.0
1,912,663	-				-0.8
1,912,663	-				-0.8
1,912,663	-				-0.8
1,912,663	-				-0.8
1,912,663	-				-0.8
1,912,663	-				+0.5
1,912,663	-				+2.0
1,912,663	-				-0.5
1,912,663	-				+0.5
1,912,663	-				-1.8
1,912,663	-				+1.5
1,912,666	+				+1.5
1,912,666	+				-0.5
1,912,767	+		AO353_08705	0.14	-0.2
1,912,767	+		AO353_08705	0.14	+0.2
1,912,767	+		AO353_08705	0.14	-0.8
1,912,767	+		AO353_08705	0.14	-0.5
1,912,767	+		AO353_08705	0.14	-0.8
1,912,767	+		AO353_08705	0.14	+0.5
1,912,767	+		AO353_08705	0.14	-0.2
1,912,767	+		AO353_08705	0.14	+1.5
1,912,767	+		AO353_08705	0.14	-0.5
1,912,767	+		AO353_08705	0.14	+0.3
1,912,767	+		AO353_08705	0.14	+0.2
1,912,767	+		AO353_08705	0.14	-1.4
1,912,768	-		AO353_08705	0.14	-1.0
1,912,768	-		AO353_08705	0.14	+2.5
1,912,768	-		AO353_08705	0.14	-0.3
1,912,768	-		AO353_08705	0.14	+1.5
1,912,768	-		AO353_08705	0.14	+1.0
1,912,768	-		AO353_08705	0.14	-2.2
1,912,768	-		AO353_08705	0.14	+0.5
1,912,768	-		AO353_08705	0.14	+2.1
1,912,768	-		AO353_08705	0.14	-1.0
1,912,781	-		AO353_08705	0.18	-0.8
1,912,781	-		AO353_08705	0.18	+0.5
1,912,781	-		AO353_08705	0.18	-1.8
1,912,799	+		AO353_08705	0.23	-1.3
1,912,799	+		AO353_08705	0.23	-0.0
1,912,799	+		AO353_08705	0.23	+1.0
1,912,799	+		AO353_08705	0.23	-0.5
1,912,799	+		AO353_08705	0.23	+0.1
1,912,799	+		AO353_08705	0.23	+0.5
1,912,799	+		AO353_08705	0.23	+0.2
1,912,799	+		AO353_08705	0.23	-1.0
1,912,799	+		AO353_08705	0.23	-1.6
1,912,799	+		AO353_08705	0.23	+0.7
1,912,800	-		AO353_08705	0.23	-0.2
1,912,800	-		AO353_08705	0.23	-1.2
1,912,802	+		AO353_08705	0.24	-0.4
1,912,802	+		AO353_08705	0.24	-0.3
1,912,802	+		AO353_08705	0.24	-1.7
1,912,802	+		AO353_08705	0.24	+1.1
1,912,802	+		AO353_08705	0.24	-1.5
1,912,802	+		AO353_08705	0.24	+0.3
1,912,802	+		AO353_08705	0.24	-0.9
1,912,803	-		AO353_08705	0.24	+0.7
1,912,803	-		AO353_08705	0.24	-0.8
1,912,803	-		AO353_08705	0.24	+1.5
1,912,803	-		AO353_08705	0.24	+1.1