Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_08475

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
1,862,586	+		AO353_08465	0.86	-0.1
1,862,587	-		AO353_08465	0.86	-1.2
1,862,613	+		AO353_08465	0.87	-1.1
1,862,613	+		AO353_08465	0.87	-0.5
1,862,614	-		AO353_08465	0.87	-0.9
1,862,784	+				-1.4
1,862,784	+				-0.9
1,862,785	-				-0.8
1,862,785	-				-1.2
1,862,785	-				-1.2
1,862,833	+				-1.1
1,862,833	+				-1.3
1,862,834	-				-1.2
1,862,834	-				-1.2
1,862,834	-				-1.1
1,862,834	-				-0.7
1,862,834	-				-0.6
1,862,869	+				-1.1
1,862,869	+				-0.7
1,862,870	-				-0.3
1,862,870	-				-0.2
1,862,896	+				-0.9
1,862,896	+				-1.2
1,862,896	+				-1.1
1,862,896	+				-0.8
1,862,897	-				-1.6
1,862,897	-				-1.0
1,862,897	-				-1.1
1,862,897	-				-0.6
1,862,897	-				-0.4
1,862,897	-				-1.1
1,862,940	+				-1.3
1,862,940	+				-0.6
1,862,941	-				-0.7
1,863,022	+		AO353_08470	0.20	+0.5
1,863,022	+		AO353_08470	0.20	-1.5
1,863,022	+		AO353_08470	0.20	-0.5
1,863,022	+		AO353_08470	0.20	-1.1
1,863,022	+		AO353_08470	0.20	-0.5
1,863,023	-		AO353_08470	0.20	+3.1
1,863,056	+		AO353_08470	0.27	-3.5
1,863,057	-		AO353_08470	0.27	+1.5
1,863,256	+		AO353_08470	0.68	-1.0
1,863,257	-		AO353_08470	0.69	+1.5
1,863,290	+		AO353_08470	0.75	+0.2
1,863,291	-		AO353_08470	0.76	+1.5
1,863,478	+				-0.0
1,863,478	+				-1.6
1,863,478	+				-0.0
1,863,478	+				-0.8
1,863,478	+				+0.2
1,863,478	+				+0.5
1,863,478	+				-1.8
1,863,478	+				-0.0
1,863,479	-				-0.8
1,863,479	-				+0.5
1,863,479	-				+2.1
1,863,479	-				+1.5
1,863,479	-				+0.5
1,863,479	-				-0.5
1,863,479	-				+1.5
1,863,479	-				-0.5
1,863,479	-				-0.6
1,863,483	+				+0.5
1,863,483	+				-0.2
1,863,483	+				-0.0
1,863,483	+				+1.1
1,863,484	-				+0.5
1,863,508	+				-3.2
1,863,508	+				+0.5
1,863,509	-				+0.5
1,863,526	-				+0.5
1,863,565	+				-2.0
1,863,566	-				-1.8
1,863,621	+		AO353_08475	0.11	-1.0
1,863,621	+		AO353_08475	0.11	-1.3
1,863,621	+		AO353_08475	0.11	-2.4
1,863,621	+		AO353_08475	0.11	-1.5
1,863,621	+		AO353_08475	0.11	-0.5
1,863,621	+		AO353_08475	0.11	+0.5
1,863,621	+		AO353_08475	0.11	-2.3
1,863,621	+		AO353_08475	0.11	-1.9
1,863,621	+		AO353_08475	0.11	-1.5
1,863,622	-		AO353_08475	0.11	-1.3
1,863,657	+		AO353_08475	0.16	-1.3
1,863,658	-		AO353_08475	0.16	+0.2
1,863,681	+		AO353_08475	0.20	-1.8
1,863,682	-		AO353_08475	0.20	+0.5
1,863,690	+		AO353_08475	0.21	-1.6
1,863,690	+		AO353_08475	0.21	-1.8
1,863,690	+		AO353_08475	0.21	+0.5
1,863,690	+		AO353_08475	0.21	-1.3
1,863,690	+		AO353_08475	0.21	+0.5
1,863,691	-		AO353_08475	0.21	-1.6
1,863,691	-		AO353_08475	0.21	-1.5
1,863,691	-		AO353_08475	0.21	-1.3
1,863,691	-		AO353_08475	0.21	-1.0
1,863,720	+		AO353_08475	0.26	+0.8
1,863,720	+		AO353_08475	0.26	-3.1
1,863,789	+		AO353_08475	0.36	-1.0
1,863,789	+		AO353_08475	0.36	+0.5
1,863,789	+		AO353_08475	0.36	+0.5
1,863,789	+		AO353_08475	0.36	-0.8
1,863,789	+		AO353_08475	0.36	-1.0
1,863,789	+		AO353_08475	0.36	-0.8
1,863,789	+		AO353_08475	0.36	-1.3
1,863,790	-		AO353_08475	0.36	-0.0
1,863,790	-		AO353_08475	0.36	-1.4
1,863,790	-		AO353_08475	0.36	-0.5
1,863,790	-		AO353_08475	0.36	-0.8
1,863,790	-		AO353_08475	0.36	-1.3
1,864,005	+		AO353_08475	0.69	-1.9
1,864,074	+		AO353_08475	0.79	-1.5
1,864,074	+		AO353_08475	0.79	+0.3
1,864,074	+		AO353_08475	0.79	-3.3
1,864,074	+		AO353_08475	0.79	-2.2
1,864,075	-		AO353_08475	0.80	-1.8
1,864,075	-		AO353_08475	0.80	-2.6
1,864,075	-		AO353_08475	0.80	-1.6
1,864,075	-		AO353_08475	0.80	-2.2
1,864,075	-		AO353_08475	0.80	+1.2
1,864,075	-		AO353_08475	0.80	-0.3
1,864,080	+		AO353_08475	0.80	-0.8
1,864,081	-		AO353_08475	0.81	+0.5
1,864,221	+				+0.2
1,864,222	-				+0.5
1,864,222	-				+1.1
1,864,222	-				-0.5
1,864,222	-				+1.5
1,864,222	-				-2.5
1,864,407	-		AO353_08480	0.18	-1.5
1,864,407	-		AO353_08480	0.18	-0.5
1,864,407	-		AO353_08480	0.18	-0.5
1,864,407	-		AO353_08480	0.18	-0.5
1,864,407	-		AO353_08480	0.18	-1.0
1,864,407	-		AO353_08480	0.18	+1.1
1,864,433	+		AO353_08480	0.24	-1.8
1,864,434	-				+1.5
1,864,434	-		AO353_08480	0.24	+0.7
1,864,434	-		AO353_08480	0.24	+0.5
1,864,445	+		AO353_08480	0.27	-1.6
1,864,446	-		AO353_08480	0.27	-0.2
1,864,446	-		AO353_08480	0.27	+1.0
1,864,489	+		AO353_08480	0.37	+1.0
1,864,489	+		AO353_08480	0.37	-0.4
1,864,489	+		AO353_08480	0.37	-0.8
1,864,489	+		AO353_08480	0.37	-0.3
1,864,490	-		AO353_08480	0.37	-0.5
1,864,490	-		AO353_08480	0.37	-0.0
1,864,490	-		AO353_08480	0.37	-1.3
1,864,490	-		AO353_08480	0.37	+0.7
1,864,791	-				-0.5
1,864,791	-				-0.0
1,864,791	-				-1.0
1,864,816	+				-0.9
1,864,816	+				-0.2
1,864,817	-				+0.3
1,864,817	-				-0.0
1,864,817	-				+0.4
1,864,899	+				-0.3
1,864,900	-				-1.7
1,864,900	-				-0.5
1,864,948	+				-0.6