Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05520

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
1,221,901	+		AO353_05515	0.41	-0.4
1,221,901	+		AO353_05515	0.41	-0.1
1,221,901	+		AO353_05515	0.41	+0.6
1,221,901	+		AO353_05515	0.41	-0.4
1,221,902	-		AO353_05515	0.42	-1.6
1,221,902	-		AO353_05515	0.42	-2.0
1,221,902	-		AO353_05515	0.42	-0.2
1,221,902	-		AO353_05515	0.42	-0.4
1,221,902	-		AO353_05515	0.42	+0.9
1,221,902	-		AO353_05515	0.42	-0.3
1,221,928	+		AO353_05515	0.44	+0.0
1,221,928	+		AO353_05515	0.44	+1.6
1,221,928	+		AO353_05515	0.44	-0.3
1,221,928	+		AO353_05515	0.44	+0.0
1,221,928	+		AO353_05515	0.44	+1.6
1,221,928	+		AO353_05515	0.44	+1.6
1,221,928	+		AO353_05515	0.44	+0.6
1,221,928	+		AO353_05515	0.44	+0.3
1,221,928	+		AO353_05515	0.44	-0.7
1,221,929	-		AO353_05515	0.44	-0.5
1,221,929	-		AO353_05515	0.44	-1.3
1,221,929	-		AO353_05515	0.44	+1.6
1,221,929	-		AO353_05515	0.44	-0.1
1,221,929	-		AO353_05515	0.44	-1.0
1,221,929	-		AO353_05515	0.44	-1.0
1,222,003	+		AO353_05515	0.51	-2.1
1,222,165	+		AO353_05515	0.66	-1.6
1,222,228	+		AO353_05515	0.71	+0.0
1,222,229	-		AO353_05515	0.72	-1.3
1,222,388	+		AO353_05515	0.86	-1.4
1,222,389	-		AO353_05515	0.86	-0.4
1,222,389	-		AO353_05515	0.86	-0.4
1,222,518	+				-0.3
1,222,518	+				-1.2
1,222,518	+				-0.9
1,222,518	+				-1.2
1,222,518	+				-3.0
1,222,518	+				-2.0
1,222,518	+				+2.2
1,222,518	+				-2.4
1,222,518	+				-0.6
1,222,518	+				+0.6
1,222,518	+				+0.2
1,222,518	+				+0.0
1,222,519	-				-0.7
1,222,519	-				-0.6
1,222,519	-				-1.2
1,222,519	-				+0.6
1,222,519	-				+1.6
1,222,519	-				+0.6
1,222,519	-				+0.0
1,222,519	-				+0.2
1,222,519	-				+0.4
1,222,519	-				-2.5
1,222,519	-				-1.8
1,222,519	-				-0.3
1,222,519	-				-0.2
1,222,694	+				-1.2
1,222,777	+				-0.6
1,222,777	+				-0.3
1,222,778	-				+1.0
1,222,799	+				+1.6
1,222,799	+				+2.6
1,222,799	+				-1.7
1,222,799	+				+0.0
1,222,800	-				+0.0
1,222,800	-				-2.1
1,222,800	-				+0.6
1,222,800	-				+1.6
1,222,800	-				+3.2
1,222,809	-				-2.3
1,222,859	+				-2.5
1,222,859	+				-1.8
1,222,859	+				-1.5
1,222,859	+				-0.7
1,222,860	-				+1.6
1,222,860	-				-1.5
1,222,860	-				-0.6
1,222,861	+				-1.7
1,222,862	-				-1.2
1,222,902	+				-1.6
1,222,902	+				-1.0
1,222,902	+				-1.1
1,222,903	-				-2.4
1,222,903	-				-1.8
1,222,903	-				+0.6
1,222,903	-				+0.0
1,222,903	-				-1.7
1,223,200	+		AO353_05520	0.36	-0.4
1,223,200	+		AO353_05520	0.36	-1.6
1,223,200	+		AO353_05520	0.36	+1.6
1,223,200	+		AO353_05520	0.36	+1.0
1,223,201	-		AO353_05520	0.36	-4.1
1,223,252	+		AO353_05520	0.42	+0.6
1,223,253	-		AO353_05520	0.43	-1.4
1,223,275	+		AO353_05520	0.45	-1.3
1,223,336	+		AO353_05520	0.52	-1.4
1,223,336	+		AO353_05520	0.52	-1.2
1,223,336	+		AO353_05520	0.52	+0.0
1,223,337	-		AO353_05520	0.52	-2.2
1,223,337	-		AO353_05520	0.52	-1.2
1,223,381	+		AO353_05520	0.58	-1.6
1,223,382	-		AO353_05520	0.58	-1.7
1,223,411	-		AO353_05520	0.61	-2.1
1,223,672	+				-1.4
1,223,672	+				-0.8
1,223,672	+				+1.9
1,223,672	+				-1.0
1,223,672	+				+0.4
1,223,672	+				-1.3
1,223,672	+				-1.1
1,223,672	+				-0.7
1,223,672	+				-0.7
1,223,672	+				-0.5
1,223,673	-				+1.6
1,223,673	-				-1.6
1,223,673	-				-1.1
1,223,673	-				-2.2
1,223,673	-				-1.0
1,223,673	-				+1.6
1,223,673	-				-2.3
1,223,673	-				+1.0
1,223,712	+				-1.4
1,223,712	+				-0.2
1,223,712	+				+0.6
1,223,712	+				-2.0
1,223,712	+				+0.6
1,223,712	+				-1.8
1,223,712	+				-1.0
1,223,712	+				-2.5
1,223,712	+				+0.0
1,223,713	-				-1.6
1,223,713	-				-0.8
1,223,713	-				-1.2
1,223,713	-				-1.4
1,223,713	-				-0.5
1,223,713	-				-2.0
1,223,713	-				-0.7
1,223,713	-				-2.2
1,223,713	-				-2.2
1,223,808	-				-1.2
1,223,808	-				+0.4
1,223,873	+		AO353_05525	0.31	+1.6
1,223,874	-		AO353_05525	0.31	-1.2
1,223,894	+		AO353_05525	0.38	-0.3
1,223,894	+		AO353_05525	0.38	-1.4
1,223,894	+		AO353_05525	0.38	+0.6
1,223,894	+		AO353_05525	0.38	-1.2
1,223,894	+		AO353_05525	0.38	+0.2
1,223,894	+		AO353_05525	0.38	-1.4
1,223,894	+		AO353_05525	0.38	-0.4
1,223,895	-		AO353_05525	0.38	-1.4
1,223,895	-		AO353_05525	0.38	-1.3
1,223,895	-		AO353_05525	0.38	+1.4
1,223,895	-		AO353_05525	0.38	-1.0
1,223,895	-		AO353_05525	0.38	-0.5
1,223,895	-		AO353_05525	0.38	+0.3
1,223,895	-		AO353_05525	0.38	-1.0
1,223,895	-		AO353_05525	0.38	-1.8
1,223,895	-		AO353_05525	0.38	+0.0
1,224,029	+		AO353_05525	0.82	-0.7
1,224,029	+		AO353_05525	0.82	+0.0
1,224,029	+		AO353_05525	0.82	-0.6
1,224,029	+		AO353_05525	0.82	+0.3
1,224,029	+		AO353_05525	0.82	+1.1
1,224,029	+		AO353_05525	0.82	-1.6
1,224,029	+		AO353_05525	0.82	-0.4
1,224,029	+		AO353_05525	0.82	-1.7
1,224,029	+		AO353_05525	0.82	+0.4
1,224,030	-		AO353_05525	0.82	-1.4
1,224,030	-		AO353_05525	0.82	-1.3
1,224,030	-		AO353_05525	0.82	-3.5
1,224,030	-		AO353_05525	0.82	+0.8
1,224,170	+				+1.6
1,224,171	-				-1.2
1,224,238	-				-1.0
1,224,239	+				-1.6
1,224,239	+				-1.0
1,224,239	+				-1.1
1,224,239	+				+3.2
1,224,239	+				-1.4
1,224,239	+				+0.0
1,224,239	+				+0.0
1,224,240	-				+1.6
1,224,272	+				+1.6
1,224,272	+				-0.6
1,224,272	+				+0.0
1,224,272	+				-1.2
1,224,273	-				-1.3
1,224,273	-				-1.6
1,224,273	-				-0.3
1,224,273	-				+1.4
1,224,273	-				+0.6
1,224,273	-				+1.2
1,224,273	-				-2.6
1,224,278	+				+2.6
1,224,278	+				-1.4
1,224,278	+				+0.0
1,224,278	+				-0.1
1,224,278	+				+0.6
1,224,278	+				-0.7
1,224,278	+				-0.7
1,224,278	+				-1.2
1,224,278	+				+0.9
1,224,278	+				-0.2
1,224,278	+				+0.0
1,224,278	+				-0.2
1,224,278	+				+0.0
1,224,278	+				-1.0
1,224,278	+				+1.0
1,224,279	-				-1.2
1,224,279	-				+0.0
1,224,279	-				-0.7
1,224,279	-				+0.0
1,224,279	-				+1.1
1,224,279	-				+0.0
1,224,326	+				-0.4
1,224,326	+				-0.4
1,224,327	-				+0.9
1,224,327	-				+0.0
1,224,327	-				-1.7
1,224,327	-				-1.6
1,224,327	-				-1.1
1,224,327	-				+1.3
1,224,327	-				+1.6
1,224,510	+		AO353_05530	0.24	-1.0
1,224,510	+		AO353_05530	0.24	+1.3
1,224,510	+		AO353_05530	0.24	-0.3
1,224,510	+		AO353_05530	0.24	-0.1
1,224,510	+		AO353_05530	0.24	-1.2
1,224,537	+		AO353_05530	0.30	+0.4
1,224,537	+		AO353_05530	0.30	+0.2
1,224,537	+		AO353_05530	0.30	+0.0
1,224,537	+		AO353_05530	0.30	-1.2
1,224,537	+		AO353_05530	0.30	+0.9
1,224,538	-		AO353_05530	0.30	+1.4
1,224,543	+		AO353_05530	0.31	+0.9
1,224,543	+		AO353_05530	0.31	-1.0
1,224,731	+		AO353_05530	0.68	-0.4