Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04230

Experiment: Nitrate reduction, replicate C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04225 and AO353_04230 overlap by 4 nucleotidesAO353_04230 and AO353_04235 overlap by 4 nucleotides AO353_04225: AO353_04225 - chemotaxis protein CheA, at 906,995 to 909,289 _04225 AO353_04230: AO353_04230 - chemotaxis protein CheW, at 909,286 to 909,969 _04230 AO353_04235: AO353_04235 - chemotaxis protein CheR, at 909,966 to 911,243 _04235 Position (kb) 909 910Strain fitness (log2 ratio) -2 -1 0 1 2at 908.344 kb on + strand, within AO353_04225at 908.344 kb on + strand, within AO353_04225at 908.344 kb on + strand, within AO353_04225at 908.344 kb on + strand, within AO353_04225at 908.344 kb on + strand, within AO353_04225at 908.344 kb on + strand, within AO353_04225at 908.345 kb on - strand, within AO353_04225at 908.345 kb on - strand, within AO353_04225at 908.345 kb on - strand, within AO353_04225at 908.345 kb on - strand, within AO353_04225at 908.345 kb on - strand, within AO353_04225at 908.345 kb on - strand, within AO353_04225at 908.345 kb on - strand, within AO353_04225at 908.427 kb on + strand, within AO353_04225at 908.427 kb on + strand, within AO353_04225at 908.427 kb on + strand, within AO353_04225at 908.427 kb on + strand, within AO353_04225at 908.427 kb on + strand, within AO353_04225at 908.427 kb on + strand, within AO353_04225at 908.428 kb on - strand, within AO353_04225at 908.428 kb on - strand, within AO353_04225at 908.428 kb on - strand, within AO353_04225at 908.649 kb on + strand, within AO353_04225at 908.649 kb on + strand, within AO353_04225at 908.649 kb on + strand, within AO353_04225at 908.650 kb on - strand, within AO353_04225at 908.767 kb on + strand, within AO353_04225at 908.931 kb on + strand, within AO353_04225at 908.931 kb on + strand, within AO353_04225at 908.931 kb on + strand, within AO353_04225at 908.931 kb on + strand, within AO353_04225at 908.932 kb on - strand, within AO353_04225at 908.932 kb on - strand, within AO353_04225at 908.932 kb on - strand, within AO353_04225at 908.932 kb on - strand, within AO353_04225at 909.377 kb on + strand, within AO353_04230at 909.377 kb on + strand, within AO353_04230at 909.377 kb on + strand, within AO353_04230at 909.378 kb on - strand, within AO353_04230at 909.378 kb on - strand, within AO353_04230at 909.378 kb on - strand, within AO353_04230at 909.378 kb on - strand, within AO353_04230at 909.378 kb on - strand, within AO353_04230at 909.378 kb on - strand, within AO353_04230at 909.378 kb on - strand, within AO353_04230at 909.798 kb on - strand, within AO353_04230at 909.830 kb on + strand, within AO353_04230at 909.975 kb on - strandat 909.975 kb on - strandat 909.975 kb on - strandat 910.001 kb on + strandat 910.001 kb on + strandat 910.002 kb on - strandat 910.060 kb on - strandat 910.105 kb on + strand, within AO353_04235at 910.105 kb on + strand, within AO353_04235at 910.105 kb on + strand, within AO353_04235at 910.105 kb on + strand, within AO353_04235at 910.106 kb on - strand, within AO353_04235at 910.106 kb on - strand, within AO353_04235at 910.106 kb on - strand, within AO353_04235at 910.106 kb on - strand, within AO353_04235at 910.177 kb on + strand, within AO353_04235at 910.177 kb on + strand, within AO353_04235at 910.178 kb on - strand, within AO353_04235at 910.213 kb on + strand, within AO353_04235at 910.213 kb on + strand, within AO353_04235at 910.213 kb on + strand, within AO353_04235at 910.213 kb on + strand, within AO353_04235at 910.213 kb on + strand, within AO353_04235at 910.214 kb on - strand, within AO353_04235at 910.214 kb on - strand, within AO353_04235at 910.214 kb on - strand, within AO353_04235at 910.247 kb on + strand, within AO353_04235at 910.247 kb on + strand, within AO353_04235at 910.247 kb on + strand, within AO353_04235at 910.247 kb on + strand, within AO353_04235at 910.247 kb on + strand, within AO353_04235at 910.248 kb on - strand, within AO353_04235at 910.418 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.552 kb on - strand, within AO353_04235at 910.552 kb on - strand, within AO353_04235at 910.552 kb on - strand, within AO353_04235at 910.552 kb on - strand, within AO353_04235at 910.553 kb on + strand, within AO353_04235at 910.553 kb on + strand, within AO353_04235at 910.553 kb on + strand, within AO353_04235at 910.553 kb on + strand, within AO353_04235at 910.554 kb on - strand, within AO353_04235at 910.554 kb on - strand, within AO353_04235at 910.554 kb on - strand, within AO353_04235at 910.554 kb on - strand, within AO353_04235at 910.554 kb on - strand, within AO353_04235at 910.554 kb on - strand, within AO353_04235at 910.554 kb on - strand, within AO353_04235at 910.554 kb on - strand, within AO353_04235at 910.554 kb on - strand, within AO353_04235at 910.609 kb on + strand, within AO353_04235at 910.609 kb on + strand, within AO353_04235at 910.609 kb on + strand, within AO353_04235at 910.610 kb on - strand, within AO353_04235at 910.610 kb on - strand, within AO353_04235at 910.610 kb on - strand, within AO353_04235at 910.642 kb on + strand, within AO353_04235at 910.642 kb on + strand, within AO353_04235at 910.643 kb on - strand, within AO353_04235at 910.753 kb on + strand, within AO353_04235at 910.754 kb on - strand, within AO353_04235at 910.754 kb on - strand, within AO353_04235at 910.802 kb on - strand, within AO353_04235at 910.910 kb on - strand, within AO353_04235at 910.910 kb on - strand, within AO353_04235at 910.962 kb on - strand, within AO353_04235

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C
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908,344 + AO353_04225 0.59 +2.3
908,344 + AO353_04225 0.59 -0.4
908,344 + AO353_04225 0.59 -2.5
908,344 + AO353_04225 0.59 +0.6
908,344 + AO353_04225 0.59 +1.5
908,344 + AO353_04225 0.59 +1.2
908,345 - AO353_04225 0.59 -1.7
908,345 - AO353_04225 0.59 +1.0
908,345 - AO353_04225 0.59 -2.3
908,345 - AO353_04225 0.59 -0.4
908,345 - AO353_04225 0.59 -1.4
908,345 - AO353_04225 0.59 -0.7
908,345 - AO353_04225 0.59 -0.7
908,427 + AO353_04225 0.62 +0.3
908,427 + AO353_04225 0.62 +0.5
908,427 + AO353_04225 0.62 +1.6
908,427 + AO353_04225 0.62 -0.5
908,427 + AO353_04225 0.62 +0.9
908,427 + AO353_04225 0.62 -2.6
908,428 - AO353_04225 0.62 -1.2
908,428 - AO353_04225 0.62 +0.6
908,428 - AO353_04225 0.62 -0.1
908,649 + AO353_04225 0.72 +1.6
908,649 + AO353_04225 0.72 +0.6
908,649 + AO353_04225 0.72 -1.0
908,650 - AO353_04225 0.72 +0.6
908,767 + AO353_04225 0.77 -0.4
908,931 + AO353_04225 0.84 +0.0
908,931 + AO353_04225 0.84 +0.6
908,931 + AO353_04225 0.84 -0.4
908,931 + AO353_04225 0.84 -2.0
908,932 - AO353_04225 0.84 -2.5
908,932 - AO353_04225 0.84 -1.8
908,932 - AO353_04225 0.84 +0.6
908,932 - AO353_04225 0.84 +1.9
909,377 + AO353_04230 0.13 -1.2
909,377 + AO353_04230 0.13 -0.7
909,377 + AO353_04230 0.13 -1.5
909,378 - AO353_04230 0.13 -1.5
909,378 - AO353_04230 0.13 -0.7
909,378 - AO353_04230 0.13 -0.8
909,378 - AO353_04230 0.13 +0.2
909,378 - AO353_04230 0.13 -0.4
909,378 - AO353_04230 0.13 +1.2
909,378 - AO353_04230 0.13 -0.8
909,798 - AO353_04230 0.75 -1.2
909,830 + AO353_04230 0.80 -0.7
909,975 - +0.6
909,975 - +1.0
909,975 - -0.9
910,001 + +0.6
910,001 + -1.2
910,002 - +0.0
910,060 - -0.7
910,105 + AO353_04235 0.11 +1.6
910,105 + AO353_04235 0.11 -0.1
910,105 + AO353_04235 0.11 +0.0
910,105 + AO353_04235 0.11 +1.2
910,106 - AO353_04235 0.11 -0.8
910,106 - AO353_04235 0.11 -1.4
910,106 - AO353_04235 0.11 +1.3
910,106 - AO353_04235 0.11 -2.0
910,177 + AO353_04235 0.17 -0.1
910,177 + AO353_04235 0.17 -1.2
910,178 - AO353_04235 0.17 -1.1
910,213 + AO353_04235 0.19 -1.5
910,213 + AO353_04235 0.19 -0.4
910,213 + AO353_04235 0.19 -1.0
910,213 + AO353_04235 0.19 -1.0
910,213 + AO353_04235 0.19 +0.6
910,214 - AO353_04235 0.19 -0.5
910,214 - AO353_04235 0.19 +1.9
910,214 - AO353_04235 0.19 +0.3
910,247 + AO353_04235 0.22 -1.1
910,247 + AO353_04235 0.22 +0.6
910,247 + AO353_04235 0.22 +0.2
910,247 + AO353_04235 0.22 -0.7
910,247 + AO353_04235 0.22 -2.3
910,248 - AO353_04235 0.22 +0.5
910,418 + AO353_04235 0.35 -2.1
910,551 + AO353_04235 0.46 -1.4
910,551 + AO353_04235 0.46 -0.4
910,551 + AO353_04235 0.46 +0.6
910,551 + AO353_04235 0.46 -2.1
910,551 + AO353_04235 0.46 -0.4
910,551 + AO353_04235 0.46 +0.0
910,551 + AO353_04235 0.46 +0.6
910,551 + AO353_04235 0.46 -1.7
910,551 + AO353_04235 0.46 -0.4
910,551 + AO353_04235 0.46 -1.4
910,551 + AO353_04235 0.46 +1.0
910,551 + AO353_04235 0.46 -0.5
910,551 + AO353_04235 0.46 -0.2
910,551 + AO353_04235 0.46 -0.7
910,551 + AO353_04235 0.46 -1.4
910,551 + AO353_04235 0.46 -1.0
910,551 + AO353_04235 0.46 -1.0
910,551 + AO353_04235 0.46 +0.3
910,551 + AO353_04235 0.46 -1.7
910,551 + AO353_04235 0.46 -1.7
910,552 - AO353_04235 0.46 +0.0
910,552 - AO353_04235 0.46 -1.2
910,552 - AO353_04235 0.46 -0.4
910,552 - AO353_04235 0.46 +0.6
910,553 + AO353_04235 0.46 -0.7
910,553 + AO353_04235 0.46 -2.0
910,553 + AO353_04235 0.46 -1.3
910,553 + AO353_04235 0.46 -0.5
910,554 - AO353_04235 0.46 -0.1
910,554 - AO353_04235 0.46 -1.4
910,554 - AO353_04235 0.46 +1.6
910,554 - AO353_04235 0.46 -1.1
910,554 - AO353_04235 0.46 -1.1
910,554 - AO353_04235 0.46 +0.5
910,554 - AO353_04235 0.46 -0.7
910,554 - AO353_04235 0.46 +1.6
910,554 - AO353_04235 0.46 -0.7
910,609 + AO353_04235 0.50 +1.2
910,609 + AO353_04235 0.50 +0.3
910,609 + AO353_04235 0.50 -0.9
910,610 - AO353_04235 0.50 +2.4
910,610 - AO353_04235 0.50 -0.6
910,610 - AO353_04235 0.50 +0.0
910,642 + AO353_04235 0.53 -1.4
910,642 + AO353_04235 0.53 +0.0
910,643 - AO353_04235 0.53 +0.3
910,753 + AO353_04235 0.62 -1.0
910,754 - AO353_04235 0.62 +0.0
910,754 - AO353_04235 0.62 +0.8
910,802 - AO353_04235 0.65 -1.8
910,910 - AO353_04235 0.74 +0.0
910,910 - AO353_04235 0.74 -0.5
910,962 - AO353_04235 0.78 +0.1

Or see this region's nucleotide sequence