Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04225

Experiment: Nitrate reduction, replicate C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_04220 and AO353_04225 overlap by 4 nucleotidesAO353_04225 and AO353_04230 overlap by 4 nucleotidesAO353_04230 and AO353_04235 overlap by 4 nucleotides AO353_04220: AO353_04220 - chemotaxis protein CheY, at 905,988 to 906,998 _04220 AO353_04225: AO353_04225 - chemotaxis protein CheA, at 906,995 to 909,289 _04225 AO353_04230: AO353_04230 - chemotaxis protein CheW, at 909,286 to 909,969 _04230 AO353_04235: AO353_04235 - chemotaxis protein CheR, at 909,966 to 911,243 _04235 Position (kb) 906 907 908 909 910Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 906.045 kb on + strandat 906.085 kb on + strandat 906.085 kb on + strandat 906.085 kb on + strandat 906.085 kb on + strandat 906.086 kb on - strandat 906.086 kb on - strandat 906.087 kb on + strandat 906.087 kb on + strandat 906.087 kb on + strandat 906.087 kb on + strandat 906.087 kb on + strandat 906.088 kb on - strandat 906.088 kb on - strandat 906.088 kb on - strandat 906.088 kb on - strandat 906.088 kb on - strandat 906.088 kb on - strandat 906.088 kb on - strandat 906.124 kb on + strand, within AO353_04220at 906.124 kb on + strand, within AO353_04220at 906.124 kb on + strand, within AO353_04220at 906.124 kb on + strand, within AO353_04220at 906.124 kb on + strand, within AO353_04220at 906.125 kb on - strand, within AO353_04220at 906.125 kb on - strand, within AO353_04220at 906.125 kb on - strand, within AO353_04220at 906.125 kb on - strand, within AO353_04220at 906.146 kb on + strand, within AO353_04220at 906.146 kb on + strand, within AO353_04220at 906.146 kb on + strand, within AO353_04220at 906.147 kb on - strand, within AO353_04220at 906.147 kb on - strand, within AO353_04220at 906.147 kb on - strand, within AO353_04220at 906.211 kb on + strand, within AO353_04220at 906.211 kb on + strand, within AO353_04220at 906.211 kb on + strand, within AO353_04220at 906.212 kb on - strand, within AO353_04220at 906.212 kb on - strand, within AO353_04220at 906.212 kb on - strand, within AO353_04220at 906.212 kb on - strand, within AO353_04220at 906.212 kb on - strand, within AO353_04220at 906.254 kb on - strand, within AO353_04220at 906.254 kb on - strand, within AO353_04220at 906.254 kb on - strand, within AO353_04220at 906.254 kb on - strand, within AO353_04220at 906.254 kb on - strand, within AO353_04220at 906.281 kb on - strand, within AO353_04220at 906.290 kb on + strand, within AO353_04220at 906.303 kb on + strand, within AO353_04220at 907.013 kb on + strandat 907.014 kb on - strandat 907.014 kb on - strandat 907.014 kb on - strandat 907.014 kb on - strandat 907.014 kb on - strandat 907.067 kb on + strandat 907.068 kb on - strandat 907.068 kb on - strandat 907.068 kb on - strandat 907.068 kb on - strandat 907.071 kb on + strandat 907.071 kb on + strandat 907.071 kb on + strandat 907.071 kb on + strandat 907.071 kb on + strandat 907.071 kb on + strandat 907.071 kb on + strandat 907.072 kb on - strandat 907.072 kb on - strandat 907.072 kb on - strandat 907.072 kb on - strandat 907.072 kb on - strandat 907.072 kb on - strandat 907.072 kb on - strandat 907.072 kb on - strandat 907.072 kb on - strandat 907.074 kb on + strandat 907.074 kb on + strandat 907.074 kb on + strandat 907.075 kb on - strandat 907.075 kb on - strandat 907.075 kb on - strandat 907.075 kb on - strandat 907.125 kb on + strandat 907.125 kb on + strandat 907.125 kb on + strandat 907.125 kb on + strandat 907.126 kb on - strandat 907.126 kb on - strandat 907.126 kb on - strandat 907.210 kb on + strandat 907.211 kb on - strandat 907.363 kb on + strand, within AO353_04225at 907.363 kb on + strand, within AO353_04225at 907.363 kb on + strand, within AO353_04225at 907.363 kb on + strand, within AO353_04225at 907.363 kb on + strand, within AO353_04225at 907.363 kb on + strand, within AO353_04225at 907.364 kb on - strand, within AO353_04225at 907.599 kb on + strand, within AO353_04225at 907.599 kb on + strand, within AO353_04225at 907.599 kb on + strand, within AO353_04225at 907.599 kb on + strand, within AO353_04225at 907.600 kb on - strand, within AO353_04225at 907.600 kb on - strand, within AO353_04225at 907.600 kb on - strand, within AO353_04225at 907.634 kb on - strand, within AO353_04225at 907.800 kb on + strand, within AO353_04225at 907.800 kb on + strand, within AO353_04225at 907.800 kb on + strand, within AO353_04225at 907.800 kb on + strand, within AO353_04225at 907.801 kb on - strand, within AO353_04225at 907.801 kb on - strand, within AO353_04225at 907.952 kb on + strand, within AO353_04225at 907.952 kb on + strand, within AO353_04225at 907.952 kb on + strand, within AO353_04225at 908.234 kb on + strand, within AO353_04225at 908.235 kb on - strand, within AO353_04225at 908.344 kb on + strand, within AO353_04225at 908.344 kb on + strand, within AO353_04225at 908.344 kb on + strand, within AO353_04225at 908.344 kb on + strand, within AO353_04225at 908.344 kb on + strand, within AO353_04225at 908.344 kb on + strand, within AO353_04225at 908.345 kb on - strand, within AO353_04225at 908.345 kb on - strand, within AO353_04225at 908.345 kb on - strand, within AO353_04225at 908.345 kb on - strand, within AO353_04225at 908.345 kb on - strand, within AO353_04225at 908.345 kb on - strand, within AO353_04225at 908.345 kb on - strand, within AO353_04225at 908.427 kb on + strand, within AO353_04225at 908.427 kb on + strand, within AO353_04225at 908.427 kb on + strand, within AO353_04225at 908.427 kb on + strand, within AO353_04225at 908.427 kb on + strand, within AO353_04225at 908.427 kb on + strand, within AO353_04225at 908.428 kb on - strand, within AO353_04225at 908.428 kb on - strand, within AO353_04225at 908.428 kb on - strand, within AO353_04225at 908.649 kb on + strand, within AO353_04225at 908.649 kb on + strand, within AO353_04225at 908.649 kb on + strand, within AO353_04225at 908.650 kb on - strand, within AO353_04225at 908.767 kb on + strand, within AO353_04225at 908.931 kb on + strand, within AO353_04225at 908.931 kb on + strand, within AO353_04225at 908.931 kb on + strand, within AO353_04225at 908.931 kb on + strand, within AO353_04225at 908.932 kb on - strand, within AO353_04225at 908.932 kb on - strand, within AO353_04225at 908.932 kb on - strand, within AO353_04225at 908.932 kb on - strand, within AO353_04225at 909.377 kb on + strand, within AO353_04230at 909.377 kb on + strand, within AO353_04230at 909.377 kb on + strand, within AO353_04230at 909.378 kb on - strand, within AO353_04230at 909.378 kb on - strand, within AO353_04230at 909.378 kb on - strand, within AO353_04230at 909.378 kb on - strand, within AO353_04230at 909.378 kb on - strand, within AO353_04230at 909.378 kb on - strand, within AO353_04230at 909.378 kb on - strand, within AO353_04230at 909.798 kb on - strand, within AO353_04230at 909.830 kb on + strand, within AO353_04230at 909.975 kb on - strandat 909.975 kb on - strandat 909.975 kb on - strandat 910.001 kb on + strandat 910.001 kb on + strandat 910.002 kb on - strandat 910.060 kb on - strandat 910.105 kb on + strand, within AO353_04235at 910.105 kb on + strand, within AO353_04235at 910.105 kb on + strand, within AO353_04235at 910.105 kb on + strand, within AO353_04235at 910.106 kb on - strand, within AO353_04235at 910.106 kb on - strand, within AO353_04235at 910.106 kb on - strand, within AO353_04235at 910.106 kb on - strand, within AO353_04235at 910.177 kb on + strand, within AO353_04235at 910.177 kb on + strand, within AO353_04235at 910.178 kb on - strand, within AO353_04235at 910.213 kb on + strand, within AO353_04235at 910.213 kb on + strand, within AO353_04235at 910.213 kb on + strand, within AO353_04235at 910.213 kb on + strand, within AO353_04235at 910.213 kb on + strand, within AO353_04235at 910.214 kb on - strand, within AO353_04235at 910.214 kb on - strand, within AO353_04235at 910.214 kb on - strand, within AO353_04235at 910.247 kb on + strand, within AO353_04235at 910.247 kb on + strand, within AO353_04235at 910.247 kb on + strand, within AO353_04235at 910.247 kb on + strand, within AO353_04235at 910.247 kb on + strand, within AO353_04235at 910.248 kb on - strand, within AO353_04235

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C
remove
906,045 + +0.9
906,085 + +1.6
906,085 + -1.5
906,085 + -1.4
906,085 + -0.3
906,086 - -1.8
906,086 - -0.7
906,087 + -0.7
906,087 + -0.4
906,087 + +2.9
906,087 + -1.1
906,087 + +1.6
906,088 - +0.0
906,088 - -0.4
906,088 - -1.7
906,088 - +1.6
906,088 - -1.0
906,088 - -1.4
906,088 - -2.1
906,124 + AO353_04220 0.13 -1.0
906,124 + AO353_04220 0.13 -0.8
906,124 + AO353_04220 0.13 -0.7
906,124 + AO353_04220 0.13 -1.7
906,124 + AO353_04220 0.13 -1.4
906,125 - AO353_04220 0.14 -1.7
906,125 - AO353_04220 0.14 +0.0
906,125 - AO353_04220 0.14 -0.7
906,125 - AO353_04220 0.14 -0.7
906,146 + AO353_04220 0.16 -0.4
906,146 + AO353_04220 0.16 +1.0
906,146 + AO353_04220 0.16 -0.4
906,147 - AO353_04220 0.16 -1.0
906,147 - AO353_04220 0.16 +0.6
906,147 - AO353_04220 0.16 +0.6
906,211 + AO353_04220 0.22 -0.7
906,211 + AO353_04220 0.22 -0.2
906,211 + AO353_04220 0.22 -0.5
906,212 - AO353_04220 0.22 -2.2
906,212 - AO353_04220 0.22 +0.6
906,212 - AO353_04220 0.22 -2.5
906,212 - AO353_04220 0.22 +1.6
906,212 - AO353_04220 0.22 -1.5
906,254 - AO353_04220 0.26 -1.0
906,254 - AO353_04220 0.26 -1.7
906,254 - AO353_04220 0.26 -1.5
906,254 - AO353_04220 0.26 -3.4
906,254 - AO353_04220 0.26 -0.4
906,281 - AO353_04220 0.29 +1.6
906,290 + AO353_04220 0.30 +1.3
906,303 + AO353_04220 0.31 -1.5
907,013 + +0.0
907,014 - +2.6
907,014 - -1.0
907,014 - -1.4
907,014 - -1.5
907,014 - +0.0
907,067 + +0.3
907,068 - +0.9
907,068 - +2.2
907,068 - +0.0
907,068 - +0.6
907,071 + -1.0
907,071 + +0.9
907,071 + -0.1
907,071 + +1.2
907,071 + -1.0
907,071 + +0.0
907,071 + +0.0
907,072 - +0.4
907,072 - +0.6
907,072 - +0.6
907,072 - -1.2
907,072 - -0.4
907,072 - -2.1
907,072 - -1.2
907,072 - -0.4
907,072 - -0.1
907,074 + -0.7
907,074 + +0.0
907,074 + -2.8
907,075 - +1.6
907,075 - -1.4
907,075 - +1.0
907,075 - -0.9
907,125 + -0.4
907,125 + -0.5
907,125 + +1.6
907,125 + -0.3
907,126 - -0.4
907,126 - +2.7
907,126 - +1.0
907,210 + +0.3
907,211 - +0.0
907,363 + AO353_04225 0.16 -0.4
907,363 + AO353_04225 0.16 +0.6
907,363 + AO353_04225 0.16 -3.1
907,363 + AO353_04225 0.16 -1.7
907,363 + AO353_04225 0.16 -0.4
907,363 + AO353_04225 0.16 -1.0
907,364 - AO353_04225 0.16 -0.4
907,599 + AO353_04225 0.26 +0.6
907,599 + AO353_04225 0.26 -0.4
907,599 + AO353_04225 0.26 +1.6
907,599 + AO353_04225 0.26 +0.0
907,600 - AO353_04225 0.26 -1.7
907,600 - AO353_04225 0.26 -1.5
907,600 - AO353_04225 0.26 -1.6
907,634 - AO353_04225 0.28 +0.1
907,800 + AO353_04225 0.35 +1.2
907,800 + AO353_04225 0.35 -1.5
907,800 + AO353_04225 0.35 -1.2
907,800 + AO353_04225 0.35 +0.2
907,801 - AO353_04225 0.35 -0.4
907,801 - AO353_04225 0.35 +0.6
907,952 + AO353_04225 0.42 +1.0
907,952 + AO353_04225 0.42 -0.7
907,952 + AO353_04225 0.42 -1.0
908,234 + AO353_04225 0.54 -0.4
908,235 - AO353_04225 0.54 -0.9
908,344 + AO353_04225 0.59 +2.3
908,344 + AO353_04225 0.59 -0.4
908,344 + AO353_04225 0.59 -2.5
908,344 + AO353_04225 0.59 +0.6
908,344 + AO353_04225 0.59 +1.5
908,344 + AO353_04225 0.59 +1.2
908,345 - AO353_04225 0.59 -1.7
908,345 - AO353_04225 0.59 +1.0
908,345 - AO353_04225 0.59 -2.3
908,345 - AO353_04225 0.59 -0.4
908,345 - AO353_04225 0.59 -1.4
908,345 - AO353_04225 0.59 -0.7
908,345 - AO353_04225 0.59 -0.7
908,427 + AO353_04225 0.62 +0.3
908,427 + AO353_04225 0.62 +0.5
908,427 + AO353_04225 0.62 +1.6
908,427 + AO353_04225 0.62 -0.5
908,427 + AO353_04225 0.62 +0.9
908,427 + AO353_04225 0.62 -2.6
908,428 - AO353_04225 0.62 -1.2
908,428 - AO353_04225 0.62 +0.6
908,428 - AO353_04225 0.62 -0.1
908,649 + AO353_04225 0.72 +1.6
908,649 + AO353_04225 0.72 +0.6
908,649 + AO353_04225 0.72 -1.0
908,650 - AO353_04225 0.72 +0.6
908,767 + AO353_04225 0.77 -0.4
908,931 + AO353_04225 0.84 +0.0
908,931 + AO353_04225 0.84 +0.6
908,931 + AO353_04225 0.84 -0.4
908,931 + AO353_04225 0.84 -2.0
908,932 - AO353_04225 0.84 -2.5
908,932 - AO353_04225 0.84 -1.8
908,932 - AO353_04225 0.84 +0.6
908,932 - AO353_04225 0.84 +1.9
909,377 + AO353_04230 0.13 -1.2
909,377 + AO353_04230 0.13 -0.7
909,377 + AO353_04230 0.13 -1.5
909,378 - AO353_04230 0.13 -1.5
909,378 - AO353_04230 0.13 -0.7
909,378 - AO353_04230 0.13 -0.8
909,378 - AO353_04230 0.13 +0.2
909,378 - AO353_04230 0.13 -0.4
909,378 - AO353_04230 0.13 +1.2
909,378 - AO353_04230 0.13 -0.8
909,798 - AO353_04230 0.75 -1.2
909,830 + AO353_04230 0.80 -0.7
909,975 - +0.6
909,975 - +1.0
909,975 - -0.9
910,001 + +0.6
910,001 + -1.2
910,002 - +0.0
910,060 - -0.7
910,105 + AO353_04235 0.11 +1.6
910,105 + AO353_04235 0.11 -0.1
910,105 + AO353_04235 0.11 +0.0
910,105 + AO353_04235 0.11 +1.2
910,106 - AO353_04235 0.11 -0.8
910,106 - AO353_04235 0.11 -1.4
910,106 - AO353_04235 0.11 +1.3
910,106 - AO353_04235 0.11 -2.0
910,177 + AO353_04235 0.17 -0.1
910,177 + AO353_04235 0.17 -1.2
910,178 - AO353_04235 0.17 -1.1
910,213 + AO353_04235 0.19 -1.5
910,213 + AO353_04235 0.19 -0.4
910,213 + AO353_04235 0.19 -1.0
910,213 + AO353_04235 0.19 -1.0
910,213 + AO353_04235 0.19 +0.6
910,214 - AO353_04235 0.19 -0.5
910,214 - AO353_04235 0.19 +1.9
910,214 - AO353_04235 0.19 +0.3
910,247 + AO353_04235 0.22 -1.1
910,247 + AO353_04235 0.22 +0.6
910,247 + AO353_04235 0.22 +0.2
910,247 + AO353_04235 0.22 -0.7
910,247 + AO353_04235 0.22 -2.3
910,248 - AO353_04235 0.22 +0.5

Or see this region's nucleotide sequence