Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04215

Experiment: Nitrate reduction, replicate C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04210 and AO353_04215 are separated by 320 nucleotidesAO353_04215 and AO353_04220 are separated by 42 nucleotides AO353_04210: AO353_04210 - peptide chain release factor 2, at 903,742 to 904,623 _04210 AO353_04215: AO353_04215 - diguanylate cyclase, at 904,944 to 905,945 _04215 AO353_04220: AO353_04220 - chemotaxis protein CheY, at 905,988 to 906,998 _04220 Position (kb) 904 905 906Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 904.882 kb on - strandat 904.882 kb on - strandat 904.887 kb on - strandat 904.887 kb on - strandat 904.887 kb on - strandat 904.887 kb on - strandat 904.887 kb on - strandat 904.887 kb on - strandat 904.987 kb on + strandat 904.987 kb on + strandat 904.987 kb on + strandat 904.987 kb on + strandat 904.988 kb on - strandat 904.988 kb on - strandat 904.988 kb on - strandat 904.988 kb on - strandat 905.024 kb on - strandat 905.095 kb on - strand, within AO353_04215at 905.171 kb on + strand, within AO353_04215at 905.172 kb on - strand, within AO353_04215at 905.172 kb on - strand, within AO353_04215at 905.172 kb on - strand, within AO353_04215at 905.308 kb on + strand, within AO353_04215at 905.308 kb on + strand, within AO353_04215at 905.308 kb on + strand, within AO353_04215at 905.308 kb on + strand, within AO353_04215at 905.308 kb on + strand, within AO353_04215at 905.309 kb on - strand, within AO353_04215at 905.309 kb on - strand, within AO353_04215at 905.309 kb on - strand, within AO353_04215at 905.309 kb on - strand, within AO353_04215at 905.309 kb on - strand, within AO353_04215at 905.320 kb on + strand, within AO353_04215at 905.320 kb on + strand, within AO353_04215at 905.321 kb on - strand, within AO353_04215at 905.321 kb on - strand, within AO353_04215at 905.392 kb on + strand, within AO353_04215at 905.392 kb on + strand, within AO353_04215at 905.392 kb on + strand, within AO353_04215at 905.393 kb on - strand, within AO353_04215at 905.393 kb on - strand, within AO353_04215at 905.393 kb on - strand, within AO353_04215at 905.393 kb on - strand, within AO353_04215at 905.393 kb on - strand, within AO353_04215at 905.414 kb on + strand, within AO353_04215at 905.536 kb on + strand, within AO353_04215at 905.536 kb on + strand, within AO353_04215at 905.536 kb on + strand, within AO353_04215at 905.536 kb on + strand, within AO353_04215at 905.536 kb on + strand, within AO353_04215at 905.536 kb on + strand, within AO353_04215at 905.536 kb on + strand, within AO353_04215at 905.536 kb on + strand, within AO353_04215at 905.536 kb on + strand, within AO353_04215at 905.536 kb on + strand, within AO353_04215at 905.536 kb on + strand, within AO353_04215at 905.536 kb on + strand, within AO353_04215at 905.537 kb on - strand, within AO353_04215at 905.537 kb on - strand, within AO353_04215at 905.537 kb on - strand, within AO353_04215at 905.537 kb on - strand, within AO353_04215at 905.537 kb on - strand, within AO353_04215at 905.537 kb on - strand, within AO353_04215at 905.537 kb on - strand, within AO353_04215at 905.537 kb on - strand, within AO353_04215at 905.599 kb on + strand, within AO353_04215at 905.919 kb on - strandat 905.919 kb on - strandat 905.934 kb on + strandat 905.934 kb on + strandat 905.934 kb on + strandat 905.934 kb on + strandat 905.935 kb on - strandat 905.935 kb on - strandat 905.962 kb on - strandat 905.970 kb on + strandat 905.971 kb on - strandat 905.971 kb on - strandat 905.971 kb on - strandat 905.971 kb on - strandat 906.045 kb on + strandat 906.085 kb on + strandat 906.085 kb on + strandat 906.085 kb on + strandat 906.085 kb on + strandat 906.086 kb on - strandat 906.086 kb on - strandat 906.087 kb on + strandat 906.087 kb on + strandat 906.087 kb on + strandat 906.087 kb on + strandat 906.087 kb on + strandat 906.088 kb on - strandat 906.088 kb on - strandat 906.088 kb on - strandat 906.088 kb on - strandat 906.088 kb on - strandat 906.088 kb on - strandat 906.088 kb on - strandat 906.124 kb on + strand, within AO353_04220at 906.124 kb on + strand, within AO353_04220at 906.124 kb on + strand, within AO353_04220at 906.124 kb on + strand, within AO353_04220at 906.124 kb on + strand, within AO353_04220at 906.125 kb on - strand, within AO353_04220at 906.125 kb on - strand, within AO353_04220at 906.125 kb on - strand, within AO353_04220at 906.125 kb on - strand, within AO353_04220at 906.146 kb on + strand, within AO353_04220at 906.146 kb on + strand, within AO353_04220at 906.146 kb on + strand, within AO353_04220at 906.147 kb on - strand, within AO353_04220at 906.147 kb on - strand, within AO353_04220at 906.147 kb on - strand, within AO353_04220at 906.211 kb on + strand, within AO353_04220at 906.211 kb on + strand, within AO353_04220at 906.211 kb on + strand, within AO353_04220at 906.212 kb on - strand, within AO353_04220at 906.212 kb on - strand, within AO353_04220at 906.212 kb on - strand, within AO353_04220at 906.212 kb on - strand, within AO353_04220at 906.212 kb on - strand, within AO353_04220at 906.254 kb on - strand, within AO353_04220at 906.254 kb on - strand, within AO353_04220at 906.254 kb on - strand, within AO353_04220at 906.254 kb on - strand, within AO353_04220at 906.254 kb on - strand, within AO353_04220at 906.281 kb on - strand, within AO353_04220at 906.290 kb on + strand, within AO353_04220at 906.303 kb on + strand, within AO353_04220

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C
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904,882 - +1.6
904,882 - -0.6
904,887 - +0.0
904,887 - +1.6
904,887 - -0.4
904,887 - +2.0
904,887 - -0.5
904,887 - -0.4
904,987 + +2.2
904,987 + -0.4
904,987 + -0.4
904,987 + +3.2
904,988 - +0.6
904,988 - -1.4
904,988 - +0.6
904,988 - -0.5
905,024 - -0.1
905,095 - AO353_04215 0.15 -1.8
905,171 + AO353_04215 0.23 +0.3
905,172 - AO353_04215 0.23 -0.7
905,172 - AO353_04215 0.23 +0.8
905,172 - AO353_04215 0.23 -1.8
905,308 + AO353_04215 0.36 -0.7
905,308 + AO353_04215 0.36 +1.6
905,308 + AO353_04215 0.36 -0.7
905,308 + AO353_04215 0.36 -2.3
905,308 + AO353_04215 0.36 +1.0
905,309 - AO353_04215 0.36 -0.4
905,309 - AO353_04215 0.36 -2.0
905,309 - AO353_04215 0.36 -2.5
905,309 - AO353_04215 0.36 -0.3
905,309 - AO353_04215 0.36 +0.5
905,320 + AO353_04215 0.38 +0.6
905,320 + AO353_04215 0.38 +0.6
905,321 - AO353_04215 0.38 -1.4
905,321 - AO353_04215 0.38 -1.5
905,392 + AO353_04215 0.45 -0.6
905,392 + AO353_04215 0.45 -0.3
905,392 + AO353_04215 0.45 +0.9
905,393 - AO353_04215 0.45 -0.7
905,393 - AO353_04215 0.45 +0.0
905,393 - AO353_04215 0.45 +0.3
905,393 - AO353_04215 0.45 +2.0
905,393 - AO353_04215 0.45 -1.2
905,414 + AO353_04215 0.47 +0.0
905,536 + AO353_04215 0.59 -1.0
905,536 + AO353_04215 0.59 +0.0
905,536 + AO353_04215 0.59 +1.6
905,536 + AO353_04215 0.59 +0.3
905,536 + AO353_04215 0.59 -0.5
905,536 + AO353_04215 0.59 +0.0
905,536 + AO353_04215 0.59 -1.0
905,536 + AO353_04215 0.59 -1.0
905,536 + AO353_04215 0.59 -0.4
905,536 + AO353_04215 0.59 -0.4
905,536 + AO353_04215 0.59 +0.4
905,536 + AO353_04215 0.59 +1.0
905,537 - AO353_04215 0.59 +3.2
905,537 - AO353_04215 0.59 -0.5
905,537 - AO353_04215 0.59 +0.0
905,537 - AO353_04215 0.59 -2.2
905,537 - AO353_04215 0.59 -0.9
905,537 - AO353_04215 0.59 +0.4
905,537 - AO353_04215 0.59 +0.4
905,537 - AO353_04215 0.59 -1.8
905,599 + AO353_04215 0.65 -1.2
905,919 - -0.6
905,919 - -0.8
905,934 + -1.5
905,934 + -0.0
905,934 + -1.0
905,934 + -1.8
905,935 - -2.4
905,935 - -1.0
905,962 - -0.0
905,970 + +0.6
905,971 - -0.1
905,971 - +1.0
905,971 - -1.0
905,971 - -2.0
906,045 + +0.9
906,085 + +1.6
906,085 + -1.5
906,085 + -1.4
906,085 + -0.3
906,086 - -1.8
906,086 - -0.7
906,087 + -0.7
906,087 + -0.4
906,087 + +2.9
906,087 + -1.1
906,087 + +1.6
906,088 - +0.0
906,088 - -0.4
906,088 - -1.7
906,088 - +1.6
906,088 - -1.0
906,088 - -1.4
906,088 - -2.1
906,124 + AO353_04220 0.13 -1.0
906,124 + AO353_04220 0.13 -0.8
906,124 + AO353_04220 0.13 -0.7
906,124 + AO353_04220 0.13 -1.7
906,124 + AO353_04220 0.13 -1.4
906,125 - AO353_04220 0.14 -1.7
906,125 - AO353_04220 0.14 +0.0
906,125 - AO353_04220 0.14 -0.7
906,125 - AO353_04220 0.14 -0.7
906,146 + AO353_04220 0.16 -0.4
906,146 + AO353_04220 0.16 +1.0
906,146 + AO353_04220 0.16 -0.4
906,147 - AO353_04220 0.16 -1.0
906,147 - AO353_04220 0.16 +0.6
906,147 - AO353_04220 0.16 +0.6
906,211 + AO353_04220 0.22 -0.7
906,211 + AO353_04220 0.22 -0.2
906,211 + AO353_04220 0.22 -0.5
906,212 - AO353_04220 0.22 -2.2
906,212 - AO353_04220 0.22 +0.6
906,212 - AO353_04220 0.22 -2.5
906,212 - AO353_04220 0.22 +1.6
906,212 - AO353_04220 0.22 -1.5
906,254 - AO353_04220 0.26 -1.0
906,254 - AO353_04220 0.26 -1.7
906,254 - AO353_04220 0.26 -1.5
906,254 - AO353_04220 0.26 -3.4
906,254 - AO353_04220 0.26 -0.4
906,281 - AO353_04220 0.29 +1.6
906,290 + AO353_04220 0.30 +1.3
906,303 + AO353_04220 0.31 -1.5

Or see this region's nucleotide sequence