Experiment: Nitrate reduction, replicate C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02830 and AO353_02835 overlap by 4 nucleotides AO353_02835 and AO353_02840 are separated by 730 nucleotides
AO353_02830: AO353_02830 - histidine kinase, at 599,830 to 601,440
_02830
AO353_02835: AO353_02835 - chemotaxis protein CheY, at 601,437 to 602,162
_02835
AO353_02840: AO353_02840 - ribonucleotide-diphosphate reductase subunit alpha, at 602,893 to 605,787
_02840
Position (kb) 601
602
603 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 600.689 kb on + strand, within AO353_02830 at 600.689 kb on + strand, within AO353_02830 at 600.689 kb on + strand, within AO353_02830 at 600.689 kb on + strand, within AO353_02830 at 600.689 kb on + strand, within AO353_02830 at 600.690 kb on - strand, within AO353_02830 at 600.733 kb on + strand, within AO353_02830 at 600.734 kb on - strand, within AO353_02830 at 600.734 kb on - strand, within AO353_02830 at 600.915 kb on + strand, within AO353_02830 at 601.019 kb on + strand, within AO353_02830 at 601.019 kb on + strand, within AO353_02830 at 601.019 kb on + strand, within AO353_02830 at 601.019 kb on + strand, within AO353_02830 at 601.019 kb on + strand, within AO353_02830 at 601.020 kb on - strand, within AO353_02830 at 601.020 kb on - strand, within AO353_02830 at 601.087 kb on - strand, within AO353_02830 at 601.104 kb on - strand, within AO353_02830 at 601.369 kb on + strand at 601.369 kb on + strand at 601.369 kb on + strand at 601.370 kb on - strand at 601.415 kb on + strand at 601.416 kb on - strand at 601.416 kb on - strand at 601.416 kb on - strand at 601.416 kb on - strand at 601.452 kb on + strand at 601.452 kb on + strand at 601.452 kb on + strand at 601.452 kb on + strand at 601.453 kb on - strand at 601.453 kb on - strand at 601.453 kb on - strand at 601.453 kb on - strand at 601.453 kb on - strand at 601.453 kb on - strand at 601.453 kb on - strand at 601.453 kb on - strand at 601.477 kb on + strand at 601.478 kb on - strand at 601.478 kb on - strand at 601.858 kb on + strand, within AO353_02835 at 601.858 kb on + strand, within AO353_02835 at 601.858 kb on + strand, within AO353_02835 at 601.858 kb on + strand, within AO353_02835 at 601.858 kb on + strand, within AO353_02835 at 601.858 kb on + strand, within AO353_02835 at 601.858 kb on + strand, within AO353_02835 at 601.859 kb on - strand, within AO353_02835 at 601.859 kb on - strand, within AO353_02835 at 601.859 kb on - strand, within AO353_02835 at 601.859 kb on - strand, within AO353_02835 at 601.859 kb on - strand, within AO353_02835 at 601.859 kb on - strand, within AO353_02835 at 601.859 kb on - strand, within AO353_02835 at 601.859 kb on - strand, within AO353_02835 at 601.859 kb on - strand, within AO353_02835 at 601.859 kb on - strand, within AO353_02835 at 601.939 kb on + strand, within AO353_02835 at 601.939 kb on + strand, within AO353_02835 at 601.940 kb on - strand, within AO353_02835 at 601.940 kb on - strand, within AO353_02835 at 602.027 kb on + strand, within AO353_02835 at 602.093 kb on - strand at 602.093 kb on - strand at 602.093 kb on - strand at 602.139 kb on + strand at 602.139 kb on + strand at 602.140 kb on - strand at 602.185 kb on + strand at 602.185 kb on + strand at 602.185 kb on + strand at 602.185 kb on + strand at 602.185 kb on + strand at 602.186 kb on - strand at 602.188 kb on + strand at 602.188 kb on + strand at 602.189 kb on - strand at 602.189 kb on - strand at 602.214 kb on + strand at 602.215 kb on - strand at 602.215 kb on - strand at 602.230 kb on + strand at 602.230 kb on + strand at 602.231 kb on - strand at 602.231 kb on - strand at 602.231 kb on - strand at 602.240 kb on + strand at 602.240 kb on + strand at 602.241 kb on - strand at 602.257 kb on + strand at 602.257 kb on + strand at 602.257 kb on + strand at 602.257 kb on + strand at 602.257 kb on + strand at 602.258 kb on - strand at 602.258 kb on - strand at 602.258 kb on - strand at 602.258 kb on - strand at 602.322 kb on - strand at 602.322 kb on - strand at 602.354 kb on + strand at 602.409 kb on + strand at 602.431 kb on + strand at 602.441 kb on - strand at 602.441 kb on - strand at 602.462 kb on + strand at 602.463 kb on - strand at 602.465 kb on + strand at 602.465 kb on + strand at 602.465 kb on + strand at 602.465 kb on + strand at 602.493 kb on + strand at 602.493 kb on + strand at 602.522 kb on + strand at 602.522 kb on + strand at 602.522 kb on + strand at 602.528 kb on + strand at 602.528 kb on + strand at 602.610 kb on + strand at 602.696 kb on + strand at 602.696 kb on + strand at 602.801 kb on + strand at 602.823 kb on + strand at 602.823 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C remove 600,689 + AO353_02830 0.53 +0.2 600,689 + AO353_02830 0.53 -2.0 600,689 + AO353_02830 0.53 -1.7 600,689 + AO353_02830 0.53 -1.0 600,689 + AO353_02830 0.53 -0.1 600,690 - AO353_02830 0.53 -1.4 600,733 + AO353_02830 0.56 -1.9 600,734 - AO353_02830 0.56 +0.7 600,734 - AO353_02830 0.56 -0.2 600,915 + AO353_02830 0.67 -0.6 601,019 + AO353_02830 0.74 -0.1 601,019 + AO353_02830 0.74 -2.1 601,019 + AO353_02830 0.74 -0.2 601,019 + AO353_02830 0.74 +1.0 601,019 + AO353_02830 0.74 -2.1 601,020 - AO353_02830 0.74 -1.3 601,020 - AO353_02830 0.74 -0.1 601,087 - AO353_02830 0.78 +0.7 601,104 - AO353_02830 0.79 +0.1 601,369 + -0.9 601,369 + -0.3 601,369 + -0.1 601,370 - +1.5 601,415 + +0.4 601,416 - -1.3 601,416 - -2.4 601,416 - -1.4 601,416 - +0.4 601,452 + +0.7 601,452 + +1.1 601,452 + +0.2 601,452 + -2.6 601,453 - +0.1 601,453 - +0.8 601,453 - -0.7 601,453 - -1.5 601,453 - -1.6 601,453 - -0.4 601,453 - +0.1 601,453 - -0.6 601,477 + +0.9 601,478 - -1.0 601,478 - +0.7 601,858 + AO353_02835 0.58 -1.3 601,858 + AO353_02835 0.58 +1.4 601,858 + AO353_02835 0.58 -1.4 601,858 + AO353_02835 0.58 -1.6 601,858 + AO353_02835 0.58 -1.1 601,858 + AO353_02835 0.58 -1.1 601,858 + AO353_02835 0.58 -1.1 601,859 - AO353_02835 0.58 +1.1 601,859 - AO353_02835 0.58 +0.4 601,859 - AO353_02835 0.58 -0.5 601,859 - AO353_02835 0.58 -2.0 601,859 - AO353_02835 0.58 -1.1 601,859 - AO353_02835 0.58 +0.7 601,859 - AO353_02835 0.58 +0.0 601,859 - AO353_02835 0.58 -2.0 601,859 - AO353_02835 0.58 +1.7 601,859 - AO353_02835 0.58 -1.1 601,939 + AO353_02835 0.69 -0.1 601,939 + AO353_02835 0.69 +0.7 601,940 - AO353_02835 0.69 +0.9 601,940 - AO353_02835 0.69 -2.0 602,027 + AO353_02835 0.81 -1.5 602,093 - +0.7 602,093 - +0.7 602,093 - -0.8 602,139 + +0.7 602,139 + -0.9 602,140 - -2.2 602,185 + +0.4 602,185 + +1.0 602,185 + +0.1 602,185 + +3.3 602,185 + -0.3 602,186 - +0.7 602,188 + +2.7 602,188 + -0.1 602,189 - -2.0 602,189 - -1.1 602,214 + +0.7 602,215 - -1.3 602,215 - -1.3 602,230 + -1.1 602,230 + +0.1 602,231 - -0.3 602,231 - -1.3 602,231 - +1.9 602,240 + -0.3 602,240 + -0.2 602,241 - +0.1 602,257 + +1.7 602,257 + -1.3 602,257 + -0.1 602,257 + -1.5 602,257 + +0.0 602,258 - +0.4 602,258 - +0.1 602,258 - -1.6 602,258 - -0.6 602,322 - +0.7 602,322 - +0.5 602,354 + -0.1 602,409 + +2.1 602,431 + -1.8 602,441 - -0.9 602,441 - -1.8 602,462 + +0.4 602,463 - +1.7 602,465 + +0.7 602,465 + +0.8 602,465 + +0.5 602,465 + -1.1 602,493 + +1.1 602,493 + -2.5 602,522 + -1.9 602,522 + +0.1 602,522 + +0.8 602,528 + +1.1 602,528 + +0.4 602,610 + -0.3 602,696 + +0.1 602,696 + -0.8 602,801 + -0.3 602,823 + -0.6 602,823 + +0.3
Or see this region's nucleotide sequence