Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02630

Experiment: Nitrate reduction, replicate C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_02620 and AO353_02625 overlap by 8 nucleotidesAO353_02625 and AO353_02630 overlap by 4 nucleotidesAO353_02630 and AO353_02635 overlap by 4 nucleotides AO353_02620: AO353_02620 - threonine-phosphate decarboxylase, at 558,812 to 559,804 _02620 AO353_02625: AO353_02625 - cobalamin biosynthesis protein CobD, at 559,797 to 560,705 _02625 AO353_02630: AO353_02630 - 5,6-dimethylbenzimidazole synthase, at 560,702 to 561,352 _02630 AO353_02635: AO353_02635 - cobyrinic acid a,c-diamide synthase, at 561,349 to 562,686 _02635 Position (kb) 560 561 562Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 559.804 kb on + strandat 559.804 kb on + strandat 559.804 kb on + strandat 559.804 kb on + strandat 559.804 kb on + strandat 559.805 kb on - strandat 559.805 kb on - strandat 559.805 kb on - strandat 559.805 kb on - strandat 559.805 kb on - strandat 559.805 kb on - strandat 559.942 kb on + strand, within AO353_02625at 559.942 kb on + strand, within AO353_02625at 559.942 kb on + strand, within AO353_02625at 559.942 kb on + strand, within AO353_02625at 559.943 kb on - strand, within AO353_02625at 559.943 kb on - strand, within AO353_02625at 559.943 kb on - strand, within AO353_02625at 560.066 kb on + strand, within AO353_02625at 560.080 kb on + strand, within AO353_02625at 560.080 kb on + strand, within AO353_02625at 560.080 kb on + strand, within AO353_02625at 560.080 kb on + strand, within AO353_02625at 560.080 kb on + strand, within AO353_02625at 560.080 kb on + strand, within AO353_02625at 560.081 kb on - strand, within AO353_02625at 560.081 kb on - strand, within AO353_02625at 560.108 kb on + strand, within AO353_02625at 560.108 kb on + strand, within AO353_02625at 560.109 kb on - strand, within AO353_02625at 560.109 kb on - strand, within AO353_02625at 560.110 kb on + strand, within AO353_02625at 560.110 kb on + strand, within AO353_02625at 560.110 kb on + strand, within AO353_02625at 560.110 kb on + strand, within AO353_02625at 560.110 kb on + strand, within AO353_02625at 560.110 kb on + strand, within AO353_02625at 560.110 kb on + strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.111 kb on - strand, within AO353_02625at 560.263 kb on - strand, within AO353_02625at 560.452 kb on + strand, within AO353_02625at 560.452 kb on + strand, within AO353_02625at 560.452 kb on + strand, within AO353_02625at 560.452 kb on + strand, within AO353_02625at 560.452 kb on + strand, within AO353_02625at 560.453 kb on - strandat 560.453 kb on - strand, within AO353_02625at 560.453 kb on - strand, within AO353_02625at 560.453 kb on - strand, within AO353_02625at 560.453 kb on - strand, within AO353_02625at 560.453 kb on - strand, within AO353_02625at 560.481 kb on + strand, within AO353_02625at 560.481 kb on + strand, within AO353_02625at 560.482 kb on - strand, within AO353_02625at 560.482 kb on - strand, within AO353_02625at 560.485 kb on + strand, within AO353_02625at 560.485 kb on + strand, within AO353_02625at 560.485 kb on + strand, within AO353_02625at 560.485 kb on + strand, within AO353_02625at 560.486 kb on - strand, within AO353_02625at 560.529 kb on + strand, within AO353_02625at 560.530 kb on - strand, within AO353_02625at 560.530 kb on - strand, within AO353_02625at 560.538 kb on + strand, within AO353_02625at 560.539 kb on - strand, within AO353_02625at 560.550 kb on - strand, within AO353_02625at 560.730 kb on + strandat 560.731 kb on - strandat 560.744 kb on + strandat 560.745 kb on - strandat 560.745 kb on - strandat 560.745 kb on - strandat 560.777 kb on + strand, within AO353_02630at 560.777 kb on + strand, within AO353_02630at 560.778 kb on - strand, within AO353_02630at 560.778 kb on - strand, within AO353_02630at 560.793 kb on + strand, within AO353_02630at 560.998 kb on + strand, within AO353_02630at 560.998 kb on + strand, within AO353_02630at 560.999 kb on - strand, within AO353_02630at 560.999 kb on - strand, within AO353_02630at 561.309 kb on + strandat 561.309 kb on + strandat 561.309 kb on + strandat 561.379 kb on + strandat 561.379 kb on + strandat 561.449 kb on + strandat 561.449 kb on + strandat 561.449 kb on + strandat 561.449 kb on + strandat 561.449 kb on + strandat 561.449 kb on + strandat 561.449 kb on + strandat 561.449 kb on + strandat 561.450 kb on - strandat 561.450 kb on - strandat 561.450 kb on - strandat 561.450 kb on - strandat 561.450 kb on - strandat 561.450 kb on - strandat 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.561 kb on - strandat 561.561 kb on - strand, within AO353_02635at 561.561 kb on - strand, within AO353_02635at 561.561 kb on - strand, within AO353_02635at 561.561 kb on - strand, within AO353_02635at 561.561 kb on - strand, within AO353_02635at 561.561 kb on - strand, within AO353_02635at 561.561 kb on - strand, within AO353_02635at 561.590 kb on - strand, within AO353_02635at 561.707 kb on + strand, within AO353_02635at 561.707 kb on + strand, within AO353_02635at 561.707 kb on + strand, within AO353_02635at 561.707 kb on + strand, within AO353_02635at 561.708 kb on - strand, within AO353_02635at 561.708 kb on - strand, within AO353_02635at 561.708 kb on - strand, within AO353_02635at 561.833 kb on + strand, within AO353_02635at 561.833 kb on + strand, within AO353_02635at 561.833 kb on + strand, within AO353_02635at 561.834 kb on - strand, within AO353_02635at 561.834 kb on - strand, within AO353_02635at 561.834 kb on - strand, within AO353_02635at 561.834 kb on - strand, within AO353_02635at 561.929 kb on + strand, within AO353_02635at 561.929 kb on + strand, within AO353_02635at 561.929 kb on + strand, within AO353_02635at 561.929 kb on + strand, within AO353_02635at 561.929 kb on + strand, within AO353_02635at 561.930 kb on - strand, within AO353_02635at 561.930 kb on - strand, within AO353_02635at 562.172 kb on + strand, within AO353_02635

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C
remove
559,804 + -2.0
559,804 + -0.7
559,804 + -0.7
559,804 + -1.3
559,804 + +0.3
559,805 - +0.3
559,805 - -0.5
559,805 - +2.3
559,805 - -0.3
559,805 - -0.3
559,805 - -0.1
559,942 + AO353_02625 0.16 +1.7
559,942 + AO353_02625 0.16 -1.1
559,942 + AO353_02625 0.16 -0.6
559,942 + AO353_02625 0.16 -0.7
559,943 - AO353_02625 0.16 +0.9
559,943 - AO353_02625 0.16 +0.9
559,943 - AO353_02625 0.16 -0.1
560,066 + AO353_02625 0.30 -0.9
560,080 + AO353_02625 0.31 -2.2
560,080 + AO353_02625 0.31 +2.4
560,080 + AO353_02625 0.31 -0.7
560,080 + AO353_02625 0.31 -0.9
560,080 + AO353_02625 0.31 -0.7
560,080 + AO353_02625 0.31 +0.2
560,081 - AO353_02625 0.31 -1.5
560,081 - AO353_02625 0.31 +0.5
560,108 + AO353_02625 0.34 +0.7
560,108 + AO353_02625 0.34 +0.1
560,109 - AO353_02625 0.34 -0.9
560,109 - AO353_02625 0.34 -0.7
560,110 + AO353_02625 0.34 -0.1
560,110 + AO353_02625 0.34 +0.5
560,110 + AO353_02625 0.34 -1.1
560,110 + AO353_02625 0.34 -0.3
560,110 + AO353_02625 0.34 -0.6
560,110 + AO353_02625 0.34 -0.3
560,110 + AO353_02625 0.34 +1.7
560,111 - AO353_02625 0.35 -1.5
560,111 - AO353_02625 0.35 -0.8
560,111 - AO353_02625 0.35 -0.9
560,111 - AO353_02625 0.35 +0.3
560,111 - AO353_02625 0.35 -0.1
560,111 - AO353_02625 0.35 -0.3
560,111 - AO353_02625 0.35 -0.3
560,111 - AO353_02625 0.35 +0.1
560,111 - AO353_02625 0.35 +0.3
560,111 - AO353_02625 0.35 -1.5
560,111 - AO353_02625 0.35 -0.7
560,111 - AO353_02625 0.35 -1.1
560,111 - AO353_02625 0.35 -2.0
560,111 - AO353_02625 0.35 -0.1
560,111 - AO353_02625 0.35 -2.0
560,111 - AO353_02625 0.35 -2.8
560,263 - AO353_02625 0.51 +0.1
560,452 + AO353_02625 0.72 -0.6
560,452 + AO353_02625 0.72 +0.1
560,452 + AO353_02625 0.72 +0.3
560,452 + AO353_02625 0.72 +0.7
560,452 + AO353_02625 0.72 +0.3
560,453 - +3.3
560,453 - AO353_02625 0.72 -2.2
560,453 - AO353_02625 0.72 +0.7
560,453 - AO353_02625 0.72 -1.9
560,453 - AO353_02625 0.72 -1.1
560,453 - AO353_02625 0.72 -1.4
560,481 + AO353_02625 0.75 -0.3
560,481 + AO353_02625 0.75 +0.0
560,482 - AO353_02625 0.75 +0.7
560,482 - AO353_02625 0.75 -0.7
560,485 + AO353_02625 0.76 -1.1
560,485 + AO353_02625 0.76 +2.4
560,485 + AO353_02625 0.76 -0.3
560,485 + AO353_02625 0.76 +0.7
560,486 - AO353_02625 0.76 -1.1
560,529 + AO353_02625 0.81 +1.7
560,530 - AO353_02625 0.81 -0.7
560,530 - AO353_02625 0.81 +0.8
560,538 + AO353_02625 0.82 +1.7
560,539 - AO353_02625 0.82 -1.9
560,550 - AO353_02625 0.83 -1.4
560,730 + -0.2
560,731 - -2.0
560,744 + +0.4
560,745 - -1.7
560,745 - +0.7
560,745 - -2.1
560,777 + AO353_02630 0.12 -1.2
560,777 + AO353_02630 0.12 -0.3
560,778 - AO353_02630 0.12 -0.3
560,778 - AO353_02630 0.12 -1.5
560,793 + AO353_02630 0.14 -1.2
560,998 + AO353_02630 0.45 -0.3
560,998 + AO353_02630 0.45 -1.3
560,999 - AO353_02630 0.46 +1.1
560,999 - AO353_02630 0.46 -1.3
561,309 + +1.3
561,309 + -0.9
561,309 + -0.2
561,379 + +0.7
561,379 + -0.3
561,449 + +0.4
561,449 + -1.2
561,449 + +0.7
561,449 + -1.3
561,449 + -0.8
561,449 + -0.3
561,449 + -0.3
561,449 + -1.7
561,450 - -1.5
561,450 - -1.3
561,450 - +0.1
561,450 - +0.8
561,450 - -0.5
561,450 - -0.3
561,560 + AO353_02635 0.16 +0.3
561,560 + AO353_02635 0.16 +0.6
561,560 + AO353_02635 0.16 +0.3
561,560 + AO353_02635 0.16 -0.3
561,560 + AO353_02635 0.16 -1.5
561,560 + AO353_02635 0.16 +1.7
561,560 + AO353_02635 0.16 -1.7
561,560 + AO353_02635 0.16 -1.7
561,560 + AO353_02635 0.16 +0.3
561,560 + AO353_02635 0.16 -1.3
561,560 + AO353_02635 0.16 +0.2
561,560 + AO353_02635 0.16 -2.0
561,560 + AO353_02635 0.16 +2.7
561,560 + AO353_02635 0.16 +1.7
561,560 + AO353_02635 0.16 -0.3
561,560 + AO353_02635 0.16 +2.4
561,560 + AO353_02635 0.16 +0.1
561,561 - -0.7
561,561 - AO353_02635 0.16 +1.7
561,561 - AO353_02635 0.16 +0.7
561,561 - AO353_02635 0.16 -0.2
561,561 - AO353_02635 0.16 -0.9
561,561 - AO353_02635 0.16 +0.1
561,561 - AO353_02635 0.16 +2.3
561,561 - AO353_02635 0.16 +1.7
561,590 - AO353_02635 0.18 -0.3
561,707 + AO353_02635 0.27 -0.8
561,707 + AO353_02635 0.27 +0.6
561,707 + AO353_02635 0.27 -0.3
561,707 + AO353_02635 0.27 +1.7
561,708 - AO353_02635 0.27 +1.3
561,708 - AO353_02635 0.27 -0.9
561,708 - AO353_02635 0.27 -1.3
561,833 + AO353_02635 0.36 -0.7
561,833 + AO353_02635 0.36 -2.1
561,833 + AO353_02635 0.36 +1.4
561,834 - AO353_02635 0.36 -1.8
561,834 - AO353_02635 0.36 -1.3
561,834 - AO353_02635 0.36 +0.7
561,834 - AO353_02635 0.36 +1.4
561,929 + AO353_02635 0.43 -1.3
561,929 + AO353_02635 0.43 +0.3
561,929 + AO353_02635 0.43 -0.9
561,929 + AO353_02635 0.43 -1.5
561,929 + AO353_02635 0.43 -0.7
561,930 - AO353_02635 0.43 -0.4
561,930 - AO353_02635 0.43 +0.3
562,172 + AO353_02635 0.62 -1.2

Or see this region's nucleotide sequence