Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02590

Experiment: Nitrate reduction, replicate C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02585 and AO353_02590 are separated by 77 nucleotidesAO353_02590 and AO353_02595 are separated by 82 nucleotidesAO353_02595 and AO353_02600 are separated by 2 nucleotides AO353_02585: AO353_02585 - MFS transporter, at 552,699 to 553,907 _02585 AO353_02590: AO353_02590 - MarR family transcriptional regulator, at 553,985 to 554,389 _02590 AO353_02595: AO353_02595 - cobalamin synthase, at 554,472 to 555,203 _02595 AO353_02600: AO353_02600 - alpha-ribazole phosphatase, at 555,206 to 555,781 _02600 Position (kb) 553 554 555Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 552.997 kb on + strand, within AO353_02585at 552.997 kb on + strand, within AO353_02585at 552.997 kb on + strand, within AO353_02585at 552.997 kb on + strand, within AO353_02585at 552.998 kb on - strand, within AO353_02585at 552.998 kb on - strand, within AO353_02585at 552.998 kb on - strand, within AO353_02585at 552.998 kb on - strand, within AO353_02585at 552.998 kb on - strand, within AO353_02585at 552.998 kb on - strand, within AO353_02585at 552.998 kb on - strand, within AO353_02585at 553.060 kb on + strand, within AO353_02585at 553.060 kb on + strand, within AO353_02585at 553.061 kb on - strand, within AO353_02585at 553.061 kb on - strand, within AO353_02585at 553.117 kb on + strand, within AO353_02585at 553.117 kb on + strand, within AO353_02585at 553.117 kb on + strand, within AO353_02585at 553.117 kb on + strand, within AO353_02585at 553.117 kb on + strand, within AO353_02585at 553.117 kb on + strand, within AO353_02585at 553.118 kb on - strand, within AO353_02585at 553.118 kb on - strand, within AO353_02585at 553.118 kb on - strand, within AO353_02585at 553.118 kb on - strand, within AO353_02585at 553.118 kb on - strand, within AO353_02585at 553.118 kb on - strand, within AO353_02585at 553.118 kb on - strand, within AO353_02585at 553.121 kb on + strand, within AO353_02585at 553.121 kb on + strand, within AO353_02585at 553.121 kb on + strand, within AO353_02585at 553.131 kb on - strand, within AO353_02585at 553.198 kb on + strand, within AO353_02585at 553.198 kb on + strand, within AO353_02585at 553.198 kb on + strand, within AO353_02585at 553.199 kb on - strand, within AO353_02585at 553.199 kb on - strand, within AO353_02585at 553.655 kb on - strand, within AO353_02585at 553.655 kb on - strand, within AO353_02585at 553.872 kb on + strandat 553.872 kb on + strandat 553.872 kb on + strandat 553.873 kb on - strandat 553.873 kb on - strandat 553.873 kb on - strandat 553.912 kb on - strandat 553.912 kb on - strandat 553.912 kb on - strandat 553.928 kb on + strandat 553.930 kb on + strandat 553.930 kb on + strandat 553.932 kb on + strandat 553.932 kb on + strandat 553.962 kb on + strandat 553.963 kb on - strandat 553.963 kb on - strandat 553.963 kb on - strandat 553.963 kb on - strandat 553.963 kb on - strandat 554.192 kb on - strand, within AO353_02590at 554.192 kb on - strand, within AO353_02590at 554.203 kb on + strand, within AO353_02590at 554.203 kb on + strand, within AO353_02590at 554.283 kb on + strand, within AO353_02590at 554.283 kb on + strand, within AO353_02590at 554.283 kb on + strand, within AO353_02590at 554.284 kb on - strand, within AO353_02590at 554.325 kb on + strand, within AO353_02590at 554.326 kb on - strand, within AO353_02590at 554.369 kb on + strandat 554.369 kb on + strandat 554.370 kb on - strandat 554.370 kb on - strandat 554.385 kb on - strandat 554.385 kb on - strandat 554.385 kb on - strandat 554.398 kb on + strandat 554.399 kb on - strandat 554.399 kb on - strandat 554.399 kb on - strandat 554.399 kb on - strandat 554.400 kb on + strandat 554.400 kb on + strandat 554.401 kb on - strandat 554.401 kb on - strandat 554.418 kb on - strandat 554.418 kb on - strandat 554.418 kb on - strandat 554.735 kb on - strand, within AO353_02595at 554.735 kb on - strand, within AO353_02595at 554.804 kb on + strand, within AO353_02595at 554.805 kb on - strand, within AO353_02595at 554.805 kb on - strand, within AO353_02595at 554.805 kb on - strand, within AO353_02595at 555.103 kb on + strand, within AO353_02595at 555.103 kb on + strand, within AO353_02595at 555.373 kb on - strand, within AO353_02600at 555.373 kb on - strand, within AO353_02600at 555.373 kb on - strand, within AO353_02600at 555.373 kb on - strand, within AO353_02600at 555.373 kb on - strand, within AO353_02600

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C
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552,997 + AO353_02585 0.25 +0.1
552,997 + AO353_02585 0.25 -0.7
552,997 + AO353_02585 0.25 -0.3
552,997 + AO353_02585 0.25 +0.9
552,998 - AO353_02585 0.25 +0.7
552,998 - AO353_02585 0.25 -0.7
552,998 - AO353_02585 0.25 -0.9
552,998 - AO353_02585 0.25 -0.6
552,998 - AO353_02585 0.25 +0.4
552,998 - AO353_02585 0.25 +0.5
552,998 - AO353_02585 0.25 +0.3
553,060 + AO353_02585 0.30 +0.9
553,060 + AO353_02585 0.30 +0.7
553,061 - AO353_02585 0.30 +1.1
553,061 - AO353_02585 0.30 -1.8
553,117 + AO353_02585 0.35 -0.7
553,117 + AO353_02585 0.35 +4.0
553,117 + AO353_02585 0.35 +0.3
553,117 + AO353_02585 0.35 -1.7
553,117 + AO353_02585 0.35 -1.4
553,117 + AO353_02585 0.35 -0.9
553,118 - AO353_02585 0.35 +0.3
553,118 - AO353_02585 0.35 +0.2
553,118 - AO353_02585 0.35 -0.5
553,118 - AO353_02585 0.35 -2.3
553,118 - AO353_02585 0.35 -0.1
553,118 - AO353_02585 0.35 +1.7
553,118 - AO353_02585 0.35 +0.7
553,121 + AO353_02585 0.35 +0.7
553,121 + AO353_02585 0.35 +0.7
553,121 + AO353_02585 0.35 +3.0
553,131 - AO353_02585 0.36 +1.3
553,198 + AO353_02585 0.41 +0.1
553,198 + AO353_02585 0.41 -1.7
553,198 + AO353_02585 0.41 -1.9
553,199 - AO353_02585 0.41 +1.4
553,199 - AO353_02585 0.41 +0.9
553,655 - AO353_02585 0.79 -0.7
553,655 - AO353_02585 0.79 +0.3
553,872 + +1.7
553,872 + -2.0
553,872 + -1.8
553,873 - +0.3
553,873 - -1.3
553,873 - -0.5
553,912 - -0.3
553,912 - +2.3
553,912 - +0.0
553,928 + +2.7
553,930 + -0.7
553,930 + +2.3
553,932 + -2.2
553,932 + +0.3
553,962 + -2.8
553,963 - -0.7
553,963 - -0.6
553,963 - -1.3
553,963 - -2.7
553,963 - -1.3
554,192 - AO353_02590 0.51 -0.1
554,192 - AO353_02590 0.51 -0.3
554,203 + AO353_02590 0.54 +0.7
554,203 + AO353_02590 0.54 -0.8
554,283 + AO353_02590 0.74 +0.1
554,283 + AO353_02590 0.74 -0.9
554,283 + AO353_02590 0.74 -2.8
554,284 - AO353_02590 0.74 -1.9
554,325 + AO353_02590 0.84 -0.9
554,326 - AO353_02590 0.84 -2.8
554,369 + -0.8
554,369 + +0.3
554,370 - -0.3
554,370 - -1.8
554,385 - -1.1
554,385 - -0.1
554,385 - +0.1
554,398 + -1.0
554,399 - +0.1
554,399 - -0.3
554,399 - +1.9
554,399 - -0.3
554,400 + -0.7
554,400 + +1.7
554,401 - +0.5
554,401 - -0.3
554,418 - -2.0
554,418 - -1.1
554,418 - -1.6
554,735 - AO353_02595 0.36 -1.7
554,735 - AO353_02595 0.36 -0.1
554,804 + AO353_02595 0.45 +0.7
554,805 - AO353_02595 0.45 -1.5
554,805 - AO353_02595 0.45 +0.7
554,805 - AO353_02595 0.45 -2.1
555,103 + AO353_02595 0.86 -0.5
555,103 + AO353_02595 0.86 +0.7
555,373 - AO353_02600 0.29 -0.5
555,373 - AO353_02600 0.29 -1.2
555,373 - AO353_02600 0.29 -0.4
555,373 - AO353_02600 0.29 -0.2
555,373 - AO353_02600 0.29 -1.2

Or see this region's nucleotide sequence