Experiment: Nitrate reduction, replicate C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02265 and AO353_02270 are separated by 238 nucleotides AO353_02270 and AO353_02275 are separated by 132 nucleotides AO353_02275 and AO353_02280 are separated by 75 nucleotides
AO353_02265: AO353_02265 - protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific, at 484,246 to 485,154
_02265
AO353_02270: AO353_02270 - isochorismatase, at 485,393 to 485,983
_02270
AO353_02275: AO353_02275 - hypothetical protein, at 486,116 to 486,436
_02275
AO353_02280: AO353_02280 - DNA mismatch repair protein MutS, at 486,512 to 487,069
_02280
Position (kb) 485
486 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 484.509 kb on - strand, within AO353_02265 at 484.547 kb on + strand, within AO353_02265 at 484.548 kb on - strand, within AO353_02265 at 484.548 kb on - strand, within AO353_02265 at 484.548 kb on - strand, within AO353_02265 at 484.548 kb on - strand, within AO353_02265 at 484.619 kb on + strand, within AO353_02265 at 484.619 kb on + strand, within AO353_02265 at 484.721 kb on + strand, within AO353_02265 at 484.846 kb on + strand, within AO353_02265 at 484.846 kb on + strand, within AO353_02265 at 484.846 kb on + strand, within AO353_02265 at 484.847 kb on - strand, within AO353_02265 at 484.847 kb on - strand, within AO353_02265 at 484.847 kb on - strand, within AO353_02265 at 484.901 kb on + strand, within AO353_02265 at 484.901 kb on + strand, within AO353_02265 at 484.901 kb on + strand, within AO353_02265 at 484.901 kb on + strand, within AO353_02265 at 484.902 kb on - strand, within AO353_02265 at 484.902 kb on - strand, within AO353_02265 at 484.988 kb on + strand, within AO353_02265 at 484.988 kb on + strand, within AO353_02265 at 484.988 kb on + strand, within AO353_02265 at 484.988 kb on + strand, within AO353_02265 at 484.988 kb on + strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 485.189 kb on + strand at 485.189 kb on + strand at 485.189 kb on + strand at 485.189 kb on + strand at 485.190 kb on - strand at 485.190 kb on - strand at 485.190 kb on - strand at 485.198 kb on - strand at 485.238 kb on + strand at 485.238 kb on + strand at 485.238 kb on + strand at 485.238 kb on + strand at 485.238 kb on + strand at 485.238 kb on + strand at 485.239 kb on - strand at 485.239 kb on - strand at 485.239 kb on - strand at 485.318 kb on + strand at 485.319 kb on - strand at 485.492 kb on + strand, within AO353_02270 at 485.492 kb on + strand, within AO353_02270 at 485.492 kb on + strand, within AO353_02270 at 485.542 kb on + strand, within AO353_02270 at 485.595 kb on + strand, within AO353_02270 at 485.595 kb on + strand, within AO353_02270 at 485.595 kb on + strand at 485.596 kb on - strand, within AO353_02270 at 485.596 kb on - strand, within AO353_02270 at 485.596 kb on - strand, within AO353_02270 at 485.596 kb on - strand, within AO353_02270 at 485.596 kb on - strand, within AO353_02270 at 485.596 kb on - strand, within AO353_02270 at 485.596 kb on - strand, within AO353_02270 at 485.596 kb on - strand, within AO353_02270 at 485.596 kb on - strand, within AO353_02270 at 485.803 kb on + strand, within AO353_02270 at 485.804 kb on - strand, within AO353_02270 at 485.804 kb on - strand, within AO353_02270 at 486.052 kb on + strand at 486.341 kb on + strand, within AO353_02275 at 486.341 kb on + strand, within AO353_02275 at 486.341 kb on + strand, within AO353_02275 at 486.341 kb on + strand, within AO353_02275 at 486.341 kb on + strand, within AO353_02275 at 486.341 kb on + strand, within AO353_02275 at 486.342 kb on - strand, within AO353_02275 at 486.342 kb on - strand, within AO353_02275 at 486.342 kb on - strand, within AO353_02275 at 486.342 kb on - strand, within AO353_02275 at 486.342 kb on - strand, within AO353_02275 at 486.342 kb on - strand, within AO353_02275 at 486.906 kb on + strand, within AO353_02280 at 486.906 kb on + strand, within AO353_02280 at 486.906 kb on + strand, within AO353_02280 at 486.906 kb on + strand, within AO353_02280
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C remove 484,509 - AO353_02265 0.29 -0.2 484,547 + AO353_02265 0.33 -0.9 484,548 - AO353_02265 0.33 +1.1 484,548 - AO353_02265 0.33 -0.7 484,548 - AO353_02265 0.33 +0.9 484,548 - AO353_02265 0.33 -0.8 484,619 + AO353_02265 0.41 -1.2 484,619 + AO353_02265 0.41 +0.1 484,721 + AO353_02265 0.52 -1.5 484,846 + AO353_02265 0.66 -1.4 484,846 + AO353_02265 0.66 -1.7 484,846 + AO353_02265 0.66 -2.1 484,847 - AO353_02265 0.66 +1.6 484,847 - AO353_02265 0.66 -1.5 484,847 - AO353_02265 0.66 -1.8 484,901 + AO353_02265 0.72 -0.4 484,901 + AO353_02265 0.72 -1.5 484,901 + AO353_02265 0.72 -0.9 484,901 + AO353_02265 0.72 -2.1 484,902 - AO353_02265 0.72 -1.8 484,902 - AO353_02265 0.72 +0.1 484,988 + AO353_02265 0.82 -0.9 484,988 + AO353_02265 0.82 +0.9 484,988 + AO353_02265 0.82 -0.7 484,988 + AO353_02265 0.82 -0.4 484,988 + AO353_02265 0.82 -0.4 484,989 - AO353_02265 0.82 +2.0 484,989 - AO353_02265 0.82 -0.6 484,989 - AO353_02265 0.82 -0.9 484,989 - AO353_02265 0.82 -0.1 484,989 - AO353_02265 0.82 -0.8 484,989 - AO353_02265 0.82 +1.6 484,989 - AO353_02265 0.82 -2.7 484,989 - AO353_02265 0.82 +0.3 484,989 - AO353_02265 0.82 +1.2 484,989 - AO353_02265 0.82 +1.1 484,989 - AO353_02265 0.82 +0.1 484,989 - AO353_02265 0.82 +0.1 484,989 - AO353_02265 0.82 +0.1 485,189 + -1.4 485,189 + +0.9 485,189 + -0.9 485,189 + -0.5 485,190 - +2.4 485,190 - +0.1 485,190 - +1.6 485,198 - -1.4 485,238 + -1.8 485,238 + +0.1 485,238 + -0.7 485,238 + +0.8 485,238 + +0.3 485,238 + +0.2 485,239 - -0.7 485,239 - +1.1 485,239 - +1.6 485,318 + +1.2 485,319 - +1.2 485,492 + AO353_02270 0.17 -2.6 485,492 + AO353_02270 0.17 -0.9 485,492 + AO353_02270 0.17 +0.1 485,542 + AO353_02270 0.25 -1.0 485,595 + AO353_02270 0.34 -2.1 485,595 + AO353_02270 0.34 -1.1 485,595 + +0.1 485,596 - AO353_02270 0.34 -1.9 485,596 - AO353_02270 0.34 -1.1 485,596 - AO353_02270 0.34 +0.6 485,596 - AO353_02270 0.34 +0.1 485,596 - AO353_02270 0.34 -0.7 485,596 - AO353_02270 0.34 -1.4 485,596 - AO353_02270 0.34 -1.1 485,596 - AO353_02270 0.34 +2.6 485,596 - AO353_02270 0.34 +1.1 485,803 + AO353_02270 0.69 -1.9 485,804 - AO353_02270 0.70 -1.3 485,804 - AO353_02270 0.70 -1.9 486,052 + +0.1 486,341 + AO353_02275 0.70 -0.9 486,341 + AO353_02275 0.70 +1.1 486,341 + AO353_02275 0.70 +0.9 486,341 + AO353_02275 0.70 +0.2 486,341 + AO353_02275 0.70 -1.7 486,341 + AO353_02275 0.70 +0.3 486,342 - AO353_02275 0.70 -0.4 486,342 - AO353_02275 0.70 -0.7 486,342 - AO353_02275 0.70 +1.1 486,342 - AO353_02275 0.70 +0.3 486,342 - AO353_02275 0.70 -1.2 486,342 - AO353_02275 0.70 -1.4 486,906 + AO353_02280 0.71 +0.7 486,906 + AO353_02280 0.71 -1.2 486,906 + AO353_02280 0.71 +3.7 486,906 + AO353_02280 0.71 -1.2
Or see this region's nucleotide sequence