Experiment: Nitrate reduction, replicate C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02030 and AO353_02035 overlap by 1 nucleotides AO353_02035 and AO353_02040 are separated by 24 nucleotides AO353_02040 and AO353_02045 are separated by 174 nucleotides AO353_02045 and AO353_02050 are separated by 196 nucleotides
AO353_02030: AO353_02030 - hypothetical protein, at 433,860 to 434,039
_02030
AO353_02035: AO353_02035 - hypothetical protein, at 434,039 to 434,278
_02035
AO353_02040: AO353_02040 - integration host factor subunit beta, at 434,303 to 434,599
_02040
AO353_02045: AO353_02045 - hypothetical protein, at 434,774 to 435,055
_02045
AO353_02050: AO353_02050 - 30S ribosomal protein S1, at 435,252 to 436,943
_02050
Position (kb) 434
435 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 433.360 kb on + strand at 433.360 kb on + strand at 433.360 kb on + strand at 433.451 kb on + strand at 433.451 kb on + strand at 433.510 kb on + strand at 433.511 kb on - strand at 433.555 kb on + strand at 433.555 kb on + strand at 433.555 kb on + strand at 433.556 kb on - strand at 433.556 kb on - strand at 433.556 kb on - strand at 433.565 kb on - strand at 433.565 kb on - strand at 433.565 kb on - strand at 433.565 kb on - strand at 433.565 kb on - strand at 433.565 kb on - strand at 433.628 kb on + strand at 433.628 kb on + strand at 433.629 kb on - strand at 433.629 kb on - strand at 433.629 kb on - strand at 433.629 kb on - strand at 433.630 kb on + strand at 433.630 kb on + strand at 433.630 kb on + strand at 433.631 kb on - strand at 433.737 kb on + strand at 433.738 kb on - strand at 433.738 kb on - strand at 433.752 kb on + strand at 433.766 kb on + strand at 433.853 kb on + strand at 433.853 kb on + strand at 433.854 kb on - strand at 433.858 kb on + strand at 433.859 kb on - strand at 433.883 kb on + strand, within AO353_02030 at 433.883 kb on + strand, within AO353_02030 at 433.883 kb on + strand, within AO353_02030 at 433.883 kb on + strand, within AO353_02030 at 433.884 kb on - strand, within AO353_02030 at 433.884 kb on - strand, within AO353_02030 at 433.884 kb on - strand, within AO353_02030 at 433.884 kb on - strand, within AO353_02030 at 433.890 kb on - strand, within AO353_02030 at 433.890 kb on - strand, within AO353_02030 at 433.961 kb on + strand, within AO353_02030 at 434.005 kb on + strand, within AO353_02030 at 434.020 kb on + strand, within AO353_02030 at 434.021 kb on - strand, within AO353_02030 at 434.053 kb on + strand at 434.053 kb on + strand at 434.054 kb on - strand at 434.258 kb on + strand at 434.258 kb on + strand at 434.259 kb on - strand at 434.272 kb on + strand at 434.272 kb on + strand at 434.273 kb on - strand at 434.273 kb on - strand at 434.273 kb on - strand at 434.378 kb on - strand, within AO353_02040 at 434.414 kb on - strand, within AO353_02040 at 434.436 kb on + strand, within AO353_02040 at 434.441 kb on + strand, within AO353_02040 at 434.553 kb on - strand, within AO353_02040 at 434.553 kb on - strand, within AO353_02040 at 434.600 kb on - strand at 434.625 kb on + strand at 434.625 kb on + strand at 434.648 kb on - strand at 434.648 kb on - strand at 434.675 kb on + strand at 434.675 kb on + strand at 434.675 kb on + strand at 434.676 kb on - strand at 434.676 kb on - strand at 434.677 kb on + strand at 434.677 kb on + strand at 434.677 kb on + strand at 434.677 kb on + strand at 434.677 kb on + strand at 434.677 kb on + strand at 434.677 kb on + strand at 434.678 kb on - strand at 434.678 kb on - strand at 434.678 kb on - strand at 434.678 kb on - strand at 434.678 kb on - strand at 434.678 kb on - strand at 434.679 kb on + strand at 434.679 kb on + strand at 434.679 kb on + strand at 434.679 kb on + strand at 434.679 kb on + strand at 434.679 kb on + strand at 434.680 kb on - strand at 434.680 kb on - strand at 434.680 kb on - strand at 434.680 kb on - strand at 434.680 kb on - strand at 434.680 kb on - strand at 434.680 kb on - strand at 434.680 kb on - strand at 434.687 kb on + strand at 434.687 kb on + strand at 434.693 kb on + strand at 434.693 kb on + strand at 434.693 kb on + strand at 434.693 kb on + strand at 434.831 kb on + strand, within AO353_02045 at 434.831 kb on + strand, within AO353_02045 at 434.832 kb on - strand, within AO353_02045 at 434.832 kb on - strand, within AO353_02045 at 434.832 kb on - strand, within AO353_02045 at 434.832 kb on - strand, within AO353_02045 at 434.835 kb on + strand, within AO353_02045 at 434.835 kb on + strand, within AO353_02045 at 434.835 kb on + strand, within AO353_02045 at 434.835 kb on + strand, within AO353_02045 at 434.835 kb on + strand, within AO353_02045 at 434.836 kb on - strand, within AO353_02045 at 434.836 kb on - strand, within AO353_02045 at 434.836 kb on - strand, within AO353_02045 at 434.836 kb on - strand, within AO353_02045 at 434.854 kb on + strand, within AO353_02045 at 434.854 kb on + strand, within AO353_02045 at 434.855 kb on - strand, within AO353_02045 at 434.883 kb on + strand, within AO353_02045 at 434.883 kb on + strand, within AO353_02045 at 434.919 kb on + strand, within AO353_02045 at 434.919 kb on + strand, within AO353_02045 at 434.919 kb on + strand, within AO353_02045 at 434.919 kb on + strand, within AO353_02045 at 434.920 kb on - strand, within AO353_02045 at 434.920 kb on - strand, within AO353_02045 at 434.920 kb on - strand, within AO353_02045 at 434.926 kb on + strand, within AO353_02045 at 434.927 kb on - strand, within AO353_02045 at 434.927 kb on - strand, within AO353_02045 at 435.007 kb on + strand, within AO353_02045 at 435.007 kb on + strand, within AO353_02045 at 435.007 kb on + strand, within AO353_02045 at 435.007 kb on + strand, within AO353_02045 at 435.007 kb on + strand, within AO353_02045 at 435.008 kb on - strand, within AO353_02045 at 435.008 kb on - strand, within AO353_02045 at 435.008 kb on - strand, within AO353_02045 at 435.105 kb on + strand at 435.105 kb on + strand at 435.106 kb on - strand at 435.106 kb on - strand at 435.106 kb on - strand at 435.106 kb on - strand at 435.112 kb on + strand at 435.112 kb on + strand at 435.122 kb on + strand at 435.123 kb on - strand at 435.133 kb on + strand at 435.133 kb on + strand at 435.133 kb on + strand at 435.134 kb on - strand at 435.134 kb on - strand at 435.134 kb on - strand at 435.134 kb on - strand at 435.157 kb on - strand at 435.157 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C remove 433,360 + +1.7 433,360 + -1.3 433,360 + +1.2 433,451 + -0.9 433,451 + -1.7 433,510 + -0.1 433,511 - -0.7 433,555 + +0.3 433,555 + -0.8 433,555 + +0.9 433,556 - -0.9 433,556 - -0.9 433,556 - +0.9 433,565 - -1.6 433,565 - -0.7 433,565 - -1.3 433,565 - -1.7 433,565 - -0.3 433,565 - +1.2 433,628 + -1.3 433,628 + -0.3 433,629 - -0.3 433,629 - +3.7 433,629 - -1.0 433,629 - -1.9 433,630 + +1.7 433,630 + -0.9 433,630 + -1.0 433,631 - +0.1 433,737 + +0.1 433,738 - -1.1 433,738 - -2.0 433,752 + -0.7 433,766 + -0.4 433,853 + +1.7 433,853 + +0.1 433,854 - +1.7 433,858 + -0.8 433,859 - -1.5 433,883 + AO353_02030 0.13 -0.7 433,883 + AO353_02030 0.13 +1.7 433,883 + AO353_02030 0.13 -0.3 433,883 + AO353_02030 0.13 -1.3 433,884 - AO353_02030 0.13 -0.3 433,884 - AO353_02030 0.13 +0.1 433,884 - AO353_02030 0.13 +0.8 433,884 - AO353_02030 0.13 +0.4 433,890 - AO353_02030 0.17 -0.6 433,890 - AO353_02030 0.17 +2.7 433,961 + AO353_02030 0.56 -0.1 434,005 + AO353_02030 0.81 +0.7 434,020 + AO353_02030 0.89 +0.3 434,021 - AO353_02030 0.89 +1.4 434,053 + -0.9 434,053 + -1.0 434,054 - -0.7 434,258 + +0.7 434,258 + +1.0 434,259 - -0.7 434,272 + -0.3 434,272 + -0.4 434,273 - +0.7 434,273 - +0.2 434,273 - +0.7 434,378 - AO353_02040 0.25 -1.5 434,414 - AO353_02040 0.37 -1.7 434,436 + AO353_02040 0.45 +0.1 434,441 + AO353_02040 0.46 +0.7 434,553 - AO353_02040 0.84 +0.1 434,553 - AO353_02040 0.84 -1.0 434,600 - +0.7 434,625 + +0.7 434,625 + +0.4 434,648 - +3.2 434,648 - +0.7 434,675 + +0.1 434,675 + -0.7 434,675 + +1.1 434,676 - -1.5 434,676 - +1.2 434,677 + -0.7 434,677 + -0.2 434,677 + -1.1 434,677 + -0.3 434,677 + -2.5 434,677 + -0.9 434,677 + +0.7 434,678 - +0.7 434,678 - -0.9 434,678 - -2.2 434,678 - -2.3 434,678 - +0.4 434,678 - +0.4 434,679 + -0.9 434,679 + -1.1 434,679 + -1.9 434,679 + +0.4 434,679 + +0.4 434,679 + -1.1 434,680 - -0.7 434,680 - -0.1 434,680 - -0.0 434,680 - -0.2 434,680 - +0.0 434,680 - +1.7 434,680 - -1.9 434,680 - -2.1 434,687 + -1.3 434,687 + -1.9 434,693 + +1.1 434,693 + +1.7 434,693 + -1.3 434,693 + +0.9 434,831 + AO353_02045 0.20 -1.0 434,831 + AO353_02045 0.20 -1.5 434,832 - AO353_02045 0.21 +1.2 434,832 - AO353_02045 0.21 -1.7 434,832 - AO353_02045 0.21 -0.1 434,832 - AO353_02045 0.21 -1.2 434,835 + AO353_02045 0.22 +0.4 434,835 + AO353_02045 0.22 +2.3 434,835 + AO353_02045 0.22 -0.9 434,835 + AO353_02045 0.22 -0.2 434,835 + AO353_02045 0.22 -1.1 434,836 - AO353_02045 0.22 -2.3 434,836 - AO353_02045 0.22 +0.1 434,836 - AO353_02045 0.22 +0.7 434,836 - AO353_02045 0.22 +0.1 434,854 + AO353_02045 0.28 +0.7 434,854 + AO353_02045 0.28 -1.1 434,855 - AO353_02045 0.29 -0.5 434,883 + AO353_02045 0.39 +1.3 434,883 + AO353_02045 0.39 -1.1 434,919 + AO353_02045 0.51 +0.7 434,919 + AO353_02045 0.51 +0.5 434,919 + AO353_02045 0.51 +0.7 434,919 + AO353_02045 0.51 +0.9 434,920 - AO353_02045 0.52 -0.3 434,920 - AO353_02045 0.52 -0.1 434,920 - AO353_02045 0.52 +0.9 434,926 + AO353_02045 0.54 +0.9 434,927 - AO353_02045 0.54 +0.5 434,927 - AO353_02045 0.54 +0.6 435,007 + AO353_02045 0.83 -0.9 435,007 + AO353_02045 0.83 +1.2 435,007 + AO353_02045 0.83 -1.3 435,007 + AO353_02045 0.83 +1.7 435,007 + AO353_02045 0.83 -0.6 435,008 - AO353_02045 0.83 -0.7 435,008 - AO353_02045 0.83 +1.2 435,008 - AO353_02045 0.83 +0.1 435,105 + -0.1 435,105 + +1.2 435,106 - +2.1 435,106 - +1.0 435,106 - -0.1 435,106 - -2.3 435,112 + -1.8 435,112 + +0.5 435,122 + +0.7 435,123 - -1.3 435,133 + +1.5 435,133 + -2.3 435,133 + -1.3 435,134 - -1.7 435,134 - +2.9 435,134 - +0.7 435,134 - +1.7 435,157 - +0.3 435,157 - +0.1
Or see this region's nucleotide sequence