Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01780

Experiment: Nitrate reduction, replicate C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_01770 and AO353_01775 are separated by 83 nucleotidesAO353_01775 and AO353_01780 are separated by 66 nucleotidesAO353_01780 and AO353_01785 are separated by 89 nucleotidesAO353_01785 and AO353_01790 overlap by 4 nucleotides AO353_01770: AO353_01770 - pirin, at 372,066 to 372,953 _01770 AO353_01775: AO353_01775 - dienelactone hydrolase, at 373,037 to 373,765 _01775 AO353_01780: AO353_01780 - heat-shock protein Hsp90, at 373,832 to 375,736 _01780 AO353_01785: AO353_01785 - thioesterase, at 375,826 to 376,278 _01785 AO353_01790: AO353_01790 - thioesterase, at 376,275 to 376,751 _01790 Position (kb) 373 374 375 376Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 372.923 kb on + strandat 372.923 kb on + strandat 372.924 kb on - strandat 372.924 kb on - strandat 372.951 kb on + strandat 372.952 kb on - strandat 372.952 kb on - strandat 372.952 kb on - strandat 372.952 kb on - strandat 372.952 kb on - strandat 373.107 kb on + strandat 373.107 kb on + strandat 373.107 kb on + strandat 373.107 kb on + strandat 373.107 kb on + strandat 373.107 kb on + strandat 373.108 kb on - strandat 373.108 kb on - strandat 373.321 kb on + strand, within AO353_01775at 373.423 kb on + strand, within AO353_01775at 373.423 kb on + strand, within AO353_01775at 373.423 kb on + strand, within AO353_01775at 373.423 kb on + strand, within AO353_01775at 373.563 kb on + strand, within AO353_01775at 373.563 kb on + strand, within AO353_01775at 373.564 kb on - strand, within AO353_01775at 373.583 kb on + strand, within AO353_01775at 373.583 kb on + strand, within AO353_01775at 373.583 kb on + strand, within AO353_01775at 373.583 kb on + strand, within AO353_01775at 373.583 kb on + strand, within AO353_01775at 373.583 kb on + strand, within AO353_01775at 373.583 kb on + strand, within AO353_01775at 373.583 kb on + strand, within AO353_01775at 373.583 kb on + strand, within AO353_01775at 373.583 kb on + strand, within AO353_01775at 373.583 kb on + strand, within AO353_01775at 373.584 kb on - strand, within AO353_01775at 373.584 kb on - strand, within AO353_01775at 373.584 kb on - strand, within AO353_01775at 373.584 kb on - strand, within AO353_01775at 373.584 kb on - strand, within AO353_01775at 373.584 kb on - strand, within AO353_01775at 373.584 kb on - strand, within AO353_01775at 373.584 kb on - strand, within AO353_01775at 373.584 kb on - strand, within AO353_01775at 373.584 kb on - strand, within AO353_01775at 373.584 kb on - strand, within AO353_01775at 373.584 kb on - strand, within AO353_01775at 373.584 kb on - strand, within AO353_01775at 373.584 kb on - strand, within AO353_01775at 373.584 kb on - strand, within AO353_01775at 373.584 kb on - strand, within AO353_01775at 373.584 kb on - strand, within AO353_01775at 373.584 kb on - strand, within AO353_01775at 373.584 kb on - strand, within AO353_01775at 373.584 kb on - strand, within AO353_01775at 373.584 kb on - strand, within AO353_01775at 373.584 kb on - strand, within AO353_01775at 373.587 kb on + strand, within AO353_01775at 373.587 kb on + strand, within AO353_01775at 373.587 kb on + strand, within AO353_01775at 373.588 kb on - strand, within AO353_01775at 373.588 kb on - strand, within AO353_01775at 373.588 kb on - strand, within AO353_01775at 373.588 kb on - strand, within AO353_01775at 373.588 kb on - strand, within AO353_01775at 373.588 kb on - strand, within AO353_01775at 373.713 kb on + strandat 373.713 kb on + strandat 373.713 kb on + strandat 373.714 kb on - strandat 373.734 kb on + strandat 373.734 kb on + strandat 373.753 kb on + strandat 373.753 kb on + strandat 373.753 kb on + strandat 373.754 kb on - strandat 373.754 kb on - strandat 373.754 kb on - strandat 373.754 kb on - strandat 373.754 kb on - strandat 373.822 kb on + strandat 373.822 kb on + strandat 373.875 kb on + strandat 373.875 kb on + strandat 373.875 kb on + strandat 373.875 kb on + strandat 373.876 kb on - strandat 373.876 kb on - strandat 373.876 kb on - strandat 373.876 kb on - strandat 374.307 kb on + strand, within AO353_01780at 374.307 kb on + strand, within AO353_01780at 374.307 kb on + strand, within AO353_01780at 374.307 kb on + strand, within AO353_01780at 374.308 kb on - strand, within AO353_01780at 374.308 kb on - strand, within AO353_01780at 374.308 kb on - strand, within AO353_01780at 374.308 kb on - strand, within AO353_01780at 374.308 kb on - strand, within AO353_01780at 374.308 kb on - strand, within AO353_01780at 374.406 kb on + strand, within AO353_01780at 374.406 kb on + strand, within AO353_01780at 374.406 kb on + strand, within AO353_01780at 374.406 kb on + strand, within AO353_01780at 374.406 kb on + strand, within AO353_01780at 374.407 kb on - strand, within AO353_01780at 374.407 kb on - strand, within AO353_01780at 374.407 kb on - strand, within AO353_01780at 374.407 kb on - strand, within AO353_01780at 374.424 kb on + strand, within AO353_01780at 374.424 kb on + strand, within AO353_01780at 374.427 kb on + strand, within AO353_01780at 374.427 kb on + strand, within AO353_01780at 374.427 kb on + strand, within AO353_01780at 374.427 kb on + strand, within AO353_01780at 374.427 kb on + strand, within AO353_01780at 374.428 kb on - strand, within AO353_01780at 374.428 kb on - strand, within AO353_01780at 374.428 kb on - strand, within AO353_01780at 374.428 kb on - strand, within AO353_01780at 374.463 kb on + strand, within AO353_01780at 374.607 kb on + strand, within AO353_01780at 374.607 kb on + strand, within AO353_01780at 374.607 kb on + strand, within AO353_01780at 374.608 kb on - strand, within AO353_01780at 374.608 kb on - strand, within AO353_01780at 374.608 kb on - strand, within AO353_01780at 374.608 kb on - strand, within AO353_01780at 374.608 kb on - strand, within AO353_01780at 374.608 kb on - strand, within AO353_01780at 374.608 kb on - strand, within AO353_01780at 374.770 kb on - strand, within AO353_01780at 374.820 kb on + strand, within AO353_01780at 374.821 kb on - strand, within AO353_01780at 374.821 kb on - strand, within AO353_01780at 374.853 kb on + strand, within AO353_01780at 374.883 kb on + strand, within AO353_01780at 374.883 kb on + strand, within AO353_01780at 374.883 kb on + strand, within AO353_01780at 374.898 kb on + strand, within AO353_01780at 374.899 kb on - strand, within AO353_01780at 374.899 kb on - strand, within AO353_01780at 374.970 kb on + strand, within AO353_01780at 374.971 kb on - strand, within AO353_01780at 375.129 kb on + strand, within AO353_01780at 375.129 kb on + strand, within AO353_01780at 375.129 kb on + strand, within AO353_01780at 375.130 kb on - strand, within AO353_01780at 375.209 kb on - strand, within AO353_01780at 375.209 kb on - strand, within AO353_01780at 375.309 kb on + strand, within AO353_01780at 375.309 kb on + strand, within AO353_01780at 375.309 kb on + strandat 375.309 kb on + strand, within AO353_01780at 375.309 kb on + strand, within AO353_01780at 375.310 kb on - strand, within AO353_01780at 375.311 kb on + strand, within AO353_01780at 375.311 kb on + strand, within AO353_01780at 375.311 kb on + strand, within AO353_01780at 375.311 kb on + strand, within AO353_01780at 375.311 kb on + strand, within AO353_01780at 375.311 kb on + strand, within AO353_01780at 375.311 kb on + strand, within AO353_01780at 375.311 kb on + strand, within AO353_01780at 375.312 kb on - strand, within AO353_01780at 375.312 kb on - strand, within AO353_01780at 375.312 kb on - strand, within AO353_01780at 375.312 kb on - strand, within AO353_01780at 375.312 kb on - strand, within AO353_01780at 375.312 kb on - strand, within AO353_01780at 375.312 kb on - strand, within AO353_01780at 375.312 kb on - strand, within AO353_01780at 375.312 kb on - strand, within AO353_01780at 375.312 kb on - strand, within AO353_01780at 375.346 kb on - strand, within AO353_01780at 375.590 kb on + strandat 375.590 kb on + strandat 375.591 kb on - strandat 375.591 kb on - strandat 375.654 kb on + strandat 375.655 kb on - strandat 375.813 kb on + strandat 375.813 kb on + strandat 375.814 kb on - strandat 375.960 kb on - strand, within AO353_01785at 375.960 kb on - strand, within AO353_01785at 375.960 kb on - strand, within AO353_01785at 375.960 kb on - strand, within AO353_01785at 375.989 kb on + strand, within AO353_01785at 375.989 kb on + strand, within AO353_01785at 375.990 kb on - strand, within AO353_01785at 375.990 kb on - strand, within AO353_01785at 376.081 kb on + strandat 376.122 kb on + strand, within AO353_01785at 376.122 kb on + strand, within AO353_01785at 376.122 kb on + strand, within AO353_01785at 376.122 kb on + strand, within AO353_01785at 376.122 kb on + strand, within AO353_01785at 376.123 kb on - strand, within AO353_01785at 376.123 kb on - strand, within AO353_01785at 376.227 kb on - strand, within AO353_01785at 376.269 kb on + strandat 376.269 kb on + strandat 376.483 kb on + strand, within AO353_01790at 376.483 kb on + strand, within AO353_01790at 376.483 kb on + strand, within AO353_01790at 376.483 kb on + strand, within AO353_01790at 376.483 kb on + strand, within AO353_01790at 376.483 kb on + strand, within AO353_01790at 376.484 kb on - strand, within AO353_01790at 376.484 kb on - strand, within AO353_01790at 376.484 kb on - strand, within AO353_01790at 376.484 kb on - strand, within AO353_01790at 376.484 kb on - strand, within AO353_01790at 376.575 kb on - strand, within AO353_01790at 376.575 kb on - strand, within AO353_01790at 376.575 kb on - strand, within AO353_01790at 376.575 kb on - strand, within AO353_01790at 376.631 kb on - strand, within AO353_01790at 376.658 kb on + strand, within AO353_01790at 376.658 kb on + strand, within AO353_01790at 376.658 kb on + strand, within AO353_01790at 376.658 kb on + strand, within AO353_01790at 376.659 kb on - strand, within AO353_01790at 376.659 kb on - strand, within AO353_01790at 376.659 kb on - strand, within AO353_01790at 376.659 kb on - strand, within AO353_01790at 376.659 kb on - strand, within AO353_01790at 376.677 kb on + strand, within AO353_01790at 376.678 kb on - strand, within AO353_01790

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C
remove
372,923 + -2.0
372,923 + +1.3
372,924 - +0.4
372,924 - -0.8
372,951 + +0.3
372,952 - -0.1
372,952 - -1.5
372,952 - -2.8
372,952 - -1.3
372,952 - -0.3
373,107 + -0.1
373,107 + -1.1
373,107 + +0.1
373,107 + +0.7
373,107 + +1.7
373,107 + +0.3
373,108 - -1.2
373,108 - +2.2
373,321 + AO353_01775 0.39 +0.5
373,423 + AO353_01775 0.53 -0.7
373,423 + AO353_01775 0.53 -2.2
373,423 + AO353_01775 0.53 -0.7
373,423 + AO353_01775 0.53 +0.3
373,563 + AO353_01775 0.72 -2.0
373,563 + AO353_01775 0.72 -1.8
373,564 - AO353_01775 0.72 +0.6
373,583 + AO353_01775 0.75 +0.3
373,583 + AO353_01775 0.75 +0.7
373,583 + AO353_01775 0.75 +0.1
373,583 + AO353_01775 0.75 +0.3
373,583 + AO353_01775 0.75 -0.1
373,583 + AO353_01775 0.75 -0.1
373,583 + AO353_01775 0.75 -1.0
373,583 + AO353_01775 0.75 -0.4
373,583 + AO353_01775 0.75 +0.7
373,583 + AO353_01775 0.75 +0.7
373,583 + AO353_01775 0.75 -0.3
373,584 - AO353_01775 0.75 -0.1
373,584 - AO353_01775 0.75 +0.7
373,584 - AO353_01775 0.75 -1.1
373,584 - AO353_01775 0.75 +1.7
373,584 - AO353_01775 0.75 +0.1
373,584 - AO353_01775 0.75 +2.1
373,584 - AO353_01775 0.75 -1.2
373,584 - AO353_01775 0.75 -0.3
373,584 - AO353_01775 0.75 +1.7
373,584 - AO353_01775 0.75 +0.4
373,584 - AO353_01775 0.75 -1.8
373,584 - AO353_01775 0.75 +2.1
373,584 - AO353_01775 0.75 -0.2
373,584 - AO353_01775 0.75 +2.3
373,584 - AO353_01775 0.75 -0.9
373,584 - AO353_01775 0.75 -1.5
373,584 - AO353_01775 0.75 -0.7
373,584 - AO353_01775 0.75 +1.7
373,584 - AO353_01775 0.75 -1.8
373,584 - AO353_01775 0.75 +3.1
373,584 - AO353_01775 0.75 +0.1
373,584 - AO353_01775 0.75 -1.7
373,587 + AO353_01775 0.75 -0.5
373,587 + AO353_01775 0.75 +3.0
373,587 + AO353_01775 0.75 -2.3
373,588 - AO353_01775 0.76 -0.9
373,588 - AO353_01775 0.76 -0.7
373,588 - AO353_01775 0.76 -0.3
373,588 - AO353_01775 0.76 +0.3
373,588 - AO353_01775 0.76 +0.7
373,588 - AO353_01775 0.76 -0.5
373,713 + -3.1
373,713 + -0.8
373,713 + -0.3
373,714 - +0.3
373,734 + +0.3
373,734 + -0.2
373,753 + +0.1
373,753 + +0.7
373,753 + -0.7
373,754 - -0.4
373,754 - -1.5
373,754 - +0.4
373,754 - -1.8
373,754 - +0.1
373,822 + +1.0
373,822 + +1.2
373,875 + +1.7
373,875 + -1.1
373,875 + -1.3
373,875 + +0.2
373,876 - -0.1
373,876 - -1.6
373,876 - -0.7
373,876 - +0.7
374,307 + AO353_01780 0.25 -1.5
374,307 + AO353_01780 0.25 -0.7
374,307 + AO353_01780 0.25 +0.1
374,307 + AO353_01780 0.25 -1.3
374,308 - AO353_01780 0.25 -0.9
374,308 - AO353_01780 0.25 -0.7
374,308 - AO353_01780 0.25 -1.5
374,308 - AO353_01780 0.25 -0.3
374,308 - AO353_01780 0.25 +1.7
374,308 - AO353_01780 0.25 -0.7
374,406 + AO353_01780 0.30 -1.0
374,406 + AO353_01780 0.30 -2.4
374,406 + AO353_01780 0.30 +0.1
374,406 + AO353_01780 0.30 -1.1
374,406 + AO353_01780 0.30 -0.2
374,407 - AO353_01780 0.30 -0.3
374,407 - AO353_01780 0.30 -1.7
374,407 - AO353_01780 0.30 -0.3
374,407 - AO353_01780 0.30 -2.0
374,424 + AO353_01780 0.31 -0.7
374,424 + AO353_01780 0.31 +0.7
374,427 + AO353_01780 0.31 -0.9
374,427 + AO353_01780 0.31 -1.7
374,427 + AO353_01780 0.31 +1.3
374,427 + AO353_01780 0.31 -0.9
374,427 + AO353_01780 0.31 -1.1
374,428 - AO353_01780 0.31 -0.9
374,428 - AO353_01780 0.31 -0.9
374,428 - AO353_01780 0.31 -2.1
374,428 - AO353_01780 0.31 -0.1
374,463 + AO353_01780 0.33 +0.1
374,607 + AO353_01780 0.41 +1.7
374,607 + AO353_01780 0.41 -0.3
374,607 + AO353_01780 0.41 +1.7
374,608 - AO353_01780 0.41 +0.8
374,608 - AO353_01780 0.41 -1.1
374,608 - AO353_01780 0.41 -0.7
374,608 - AO353_01780 0.41 -0.3
374,608 - AO353_01780 0.41 -0.9
374,608 - AO353_01780 0.41 -1.2
374,608 - AO353_01780 0.41 -0.7
374,770 - AO353_01780 0.49 -1.3
374,820 + AO353_01780 0.52 -1.1
374,821 - AO353_01780 0.52 -0.4
374,821 - AO353_01780 0.52 -2.0
374,853 + AO353_01780 0.54 -2.3
374,883 + AO353_01780 0.55 +0.7
374,883 + AO353_01780 0.55 +1.1
374,883 + AO353_01780 0.55 +1.7
374,898 + AO353_01780 0.56 -1.5
374,899 - AO353_01780 0.56 +0.4
374,899 - AO353_01780 0.56 +1.3
374,970 + AO353_01780 0.60 +1.1
374,971 - AO353_01780 0.60 -1.3
375,129 + AO353_01780 0.68 +0.1
375,129 + AO353_01780 0.68 +0.1
375,129 + AO353_01780 0.68 +0.7
375,130 - AO353_01780 0.68 +0.9
375,209 - AO353_01780 0.72 +0.1
375,209 - AO353_01780 0.72 -1.8
375,309 + AO353_01780 0.78 -0.2
375,309 + AO353_01780 0.78 -1.8
375,309 + -1.1
375,309 + AO353_01780 0.78 -2.1
375,309 + AO353_01780 0.78 -2.0
375,310 - AO353_01780 0.78 -2.1
375,311 + AO353_01780 0.78 -0.1
375,311 + AO353_01780 0.78 +0.1
375,311 + AO353_01780 0.78 -0.6
375,311 + AO353_01780 0.78 +1.7
375,311 + AO353_01780 0.78 -1.5
375,311 + AO353_01780 0.78 +0.1
375,311 + AO353_01780 0.78 -0.7
375,311 + AO353_01780 0.78 -1.5
375,312 - AO353_01780 0.78 -1.3
375,312 - AO353_01780 0.78 +1.3
375,312 - AO353_01780 0.78 -1.1
375,312 - AO353_01780 0.78 -1.8
375,312 - AO353_01780 0.78 -1.3
375,312 - AO353_01780 0.78 +0.1
375,312 - AO353_01780 0.78 -1.5
375,312 - AO353_01780 0.78 -2.1
375,312 - AO353_01780 0.78 -1.7
375,312 - AO353_01780 0.78 -2.8
375,346 - AO353_01780 0.79 -2.1
375,590 + -2.2
375,590 + +0.7
375,591 - -1.3
375,591 - -1.3
375,654 + -1.5
375,655 - -0.7
375,813 + -0.2
375,813 + -0.7
375,814 - +0.1
375,960 - AO353_01785 0.30 -0.9
375,960 - AO353_01785 0.30 +1.7
375,960 - AO353_01785 0.30 +0.8
375,960 - AO353_01785 0.30 -1.9
375,989 + AO353_01785 0.36 +0.8
375,989 + AO353_01785 0.36 -0.3
375,990 - AO353_01785 0.36 -1.1
375,990 - AO353_01785 0.36 +0.6
376,081 + +0.7
376,122 + AO353_01785 0.65 -0.5
376,122 + AO353_01785 0.65 -0.4
376,122 + AO353_01785 0.65 -0.8
376,122 + AO353_01785 0.65 -0.6
376,122 + AO353_01785 0.65 +1.3
376,123 - AO353_01785 0.66 -0.7
376,123 - AO353_01785 0.66 -1.2
376,227 - AO353_01785 0.89 -0.0
376,269 + -1.9
376,269 + -0.3
376,483 + AO353_01790 0.44 +0.7
376,483 + AO353_01790 0.44 -2.1
376,483 + AO353_01790 0.44 -1.9
376,483 + AO353_01790 0.44 +1.3
376,483 + AO353_01790 0.44 -0.8
376,483 + AO353_01790 0.44 -0.1
376,484 - AO353_01790 0.44 +0.1
376,484 - AO353_01790 0.44 -1.3
376,484 - AO353_01790 0.44 -0.9
376,484 - AO353_01790 0.44 -0.1
376,484 - AO353_01790 0.44 -1.1
376,575 - AO353_01790 0.63 +0.7
376,575 - AO353_01790 0.63 -0.9
376,575 - AO353_01790 0.63 +0.1
376,575 - AO353_01790 0.63 +1.3
376,631 - AO353_01790 0.75 +2.7
376,658 + AO353_01790 0.80 -0.2
376,658 + AO353_01790 0.80 +0.7
376,658 + AO353_01790 0.80 -0.5
376,658 + AO353_01790 0.80 +1.7
376,659 - AO353_01790 0.81 -0.3
376,659 - AO353_01790 0.81 -0.9
376,659 - AO353_01790 0.81 -0.3
376,659 - AO353_01790 0.81 +2.1
376,659 - AO353_01790 0.81 +1.3
376,677 + AO353_01790 0.84 -0.6
376,678 - AO353_01790 0.84 -2.5

Or see this region's nucleotide sequence