Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00815

Experiment: Nitrate reduction, replicate C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00805 and AO353_00810 overlap by 4 nucleotidesAO353_00810 and AO353_00815 overlap by 1 nucleotidesAO353_00815 and AO353_00820 are separated by 10 nucleotidesAO353_00820 and AO353_00825 are separated by 105 nucleotides AO353_00805: AO353_00805 - Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data), at 182,772 to 185,225 _00805 AO353_00810: AO353_00810 - Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data), at 185,222 to 185,539 _00810 AO353_00815: AO353_00815 - Nitrate reductase (EC 1.7.99.4) (from data), at 185,539 to 188,256 _00815 AO353_00820: AO353_00820 - uroporphyrin-III methyltransferase, at 188,267 to 189,040 _00820 AO353_00825: AO353_00825 - porin, at 189,146 to 190,120 _00825 Position (kb) 185 186 187 188 189Strain fitness (log2 ratio) -2 -1 0 1 2 3at 184.551 kb on + strand, within AO353_00805at 184.551 kb on + strand, within AO353_00805at 184.551 kb on + strand, within AO353_00805at 184.551 kb on + strand, within AO353_00805at 184.551 kb on + strand, within AO353_00805at 184.551 kb on + strand, within AO353_00805at 184.551 kb on + strand, within AO353_00805at 184.551 kb on + strand, within AO353_00805at 184.551 kb on + strand, within AO353_00805at 184.551 kb on + strand, within AO353_00805at 184.551 kb on + strand, within AO353_00805at 184.551 kb on + strand, within AO353_00805at 184.552 kb on - strand, within AO353_00805at 184.552 kb on - strand, within AO353_00805at 184.552 kb on - strand, within AO353_00805at 184.552 kb on - strand, within AO353_00805at 184.552 kb on - strand, within AO353_00805at 184.552 kb on - strand, within AO353_00805at 184.552 kb on - strand, within AO353_00805at 184.552 kb on - strand, within AO353_00805at 184.552 kb on - strand, within AO353_00805at 184.888 kb on - strand, within AO353_00805at 184.888 kb on - strand, within AO353_00805at 184.888 kb on - strand, within AO353_00805at 184.888 kb on - strand, within AO353_00805at 184.888 kb on - strand, within AO353_00805at 184.888 kb on - strand, within AO353_00805at 184.888 kb on - strand, within AO353_00805at 184.888 kb on - strand, within AO353_00805at 184.888 kb on - strand, within AO353_00805at 184.888 kb on - strand, within AO353_00805at 184.888 kb on - strand, within AO353_00805at 184.888 kb on - strand, within AO353_00805at 184.888 kb on - strand, within AO353_00805at 184.888 kb on - strand, within AO353_00805at 184.888 kb on - strand, within AO353_00805at 184.969 kb on - strand, within AO353_00805at 184.969 kb on - strand, within AO353_00805at 184.993 kb on - strandat 185.010 kb on + strandat 185.011 kb on - strandat 185.011 kb on - strandat 185.011 kb on - strandat 185.011 kb on - strandat 185.011 kb on - strandat 185.236 kb on + strandat 185.390 kb on + strand, within AO353_00810at 185.390 kb on + strand, within AO353_00810at 185.390 kb on + strand, within AO353_00810at 185.390 kb on + strand, within AO353_00810at 185.390 kb on + strand, within AO353_00810at 185.390 kb on + strand, within AO353_00810at 185.391 kb on - strand, within AO353_00810at 185.725 kb on + strandat 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.853 kb on + strand, within AO353_00815at 185.853 kb on + strand, within AO353_00815at 185.853 kb on + strand, within AO353_00815at 185.853 kb on + strand, within AO353_00815at 185.853 kb on + strand, within AO353_00815at 185.854 kb on - strand, within AO353_00815at 185.854 kb on - strand, within AO353_00815at 185.881 kb on + strand, within AO353_00815at 185.881 kb on + strand, within AO353_00815at 185.881 kb on + strand, within AO353_00815at 185.881 kb on + strand, within AO353_00815at 185.881 kb on + strand, within AO353_00815at 185.881 kb on + strand, within AO353_00815at 185.881 kb on + strand, within AO353_00815at 185.882 kb on - strand, within AO353_00815at 185.882 kb on - strand, within AO353_00815at 185.882 kb on - strand, within AO353_00815at 185.882 kb on - strand, within AO353_00815at 185.882 kb on - strand, within AO353_00815at 185.882 kb on - strand, within AO353_00815at 185.882 kb on - strand, within AO353_00815at 185.882 kb on - strand, within AO353_00815at 185.882 kb on - strand, within AO353_00815at 185.884 kb on + strand, within AO353_00815at 185.884 kb on + strand, within AO353_00815at 185.885 kb on - strand, within AO353_00815at 185.885 kb on - strand, within AO353_00815at 185.937 kb on + strand, within AO353_00815at 185.937 kb on + strand, within AO353_00815at 185.938 kb on - strand, within AO353_00815at 185.975 kb on - strand, within AO353_00815at 186.013 kb on + strand, within AO353_00815at 186.013 kb on + strand, within AO353_00815at 186.013 kb on + strand, within AO353_00815at 186.013 kb on + strand, within AO353_00815at 186.013 kb on + strand, within AO353_00815at 186.013 kb on + strand, within AO353_00815at 186.013 kb on + strand, within AO353_00815at 186.014 kb on - strand, within AO353_00815at 186.014 kb on - strand, within AO353_00815at 186.014 kb on - strand, within AO353_00815at 186.014 kb on - strand, within AO353_00815at 186.014 kb on - strand, within AO353_00815at 186.067 kb on + strand, within AO353_00815at 186.153 kb on + strand, within AO353_00815at 186.153 kb on + strand, within AO353_00815at 186.154 kb on - strand, within AO353_00815at 186.154 kb on - strand, within AO353_00815at 186.323 kb on - strand, within AO353_00815at 186.323 kb on - strand, within AO353_00815at 186.323 kb on - strand, within AO353_00815at 186.323 kb on - strand, within AO353_00815at 186.643 kb on + strand, within AO353_00815at 186.662 kb on + strand, within AO353_00815at 187.078 kb on + strand, within AO353_00815at 187.079 kb on - strand, within AO353_00815at 187.079 kb on - strand, within AO353_00815at 187.079 kb on - strand, within AO353_00815at 187.079 kb on - strand, within AO353_00815at 187.079 kb on - strand, within AO353_00815at 187.079 kb on - strand, within AO353_00815at 187.569 kb on + strand, within AO353_00815at 187.570 kb on - strand, within AO353_00815at 187.570 kb on - strand, within AO353_00815at 187.570 kb on - strand, within AO353_00815at 187.709 kb on + strand, within AO353_00815at 187.709 kb on + strand, within AO353_00815at 187.710 kb on - strand, within AO353_00815at 187.710 kb on - strand, within AO353_00815at 187.870 kb on + strand, within AO353_00815at 187.870 kb on + strand, within AO353_00815at 188.261 kb on + strandat 188.261 kb on + strandat 188.261 kb on + strandat 188.261 kb on + strandat 188.261 kb on + strandat 188.262 kb on - strandat 188.335 kb on - strandat 188.358 kb on + strand, within AO353_00820at 188.358 kb on + strand, within AO353_00820at 188.358 kb on + strand, within AO353_00820at 188.358 kb on + strand, within AO353_00820at 188.358 kb on + strand, within AO353_00820at 188.358 kb on + strand, within AO353_00820at 188.358 kb on + strand, within AO353_00820at 188.358 kb on + strand, within AO353_00820at 188.358 kb on + strand, within AO353_00820at 188.358 kb on + strand, within AO353_00820at 188.359 kb on - strand, within AO353_00820at 188.359 kb on - strand, within AO353_00820at 188.359 kb on - strand, within AO353_00820at 188.359 kb on - strand, within AO353_00820at 188.489 kb on + strand, within AO353_00820at 188.647 kb on + strand, within AO353_00820at 188.647 kb on + strand, within AO353_00820at 188.648 kb on - strand, within AO353_00820at 188.682 kb on + strand, within AO353_00820at 188.722 kb on + strand, within AO353_00820at 188.722 kb on + strand, within AO353_00820at 188.723 kb on - strand, within AO353_00820at 188.765 kb on + strand, within AO353_00820at 188.765 kb on + strand, within AO353_00820at 188.765 kb on + strand, within AO353_00820at 188.765 kb on + strand, within AO353_00820at 188.765 kb on + strand, within AO353_00820at 188.765 kb on + strand, within AO353_00820at 188.766 kb on - strand, within AO353_00820at 188.766 kb on - strand, within AO353_00820at 188.766 kb on - strand, within AO353_00820at 188.766 kb on - strand, within AO353_00820at 188.766 kb on - strand, within AO353_00820at 189.007 kb on + strandat 189.008 kb on - strandat 189.008 kb on - strandat 189.038 kb on + strandat 189.038 kb on + strandat 189.038 kb on + strandat 189.038 kb on + strandat 189.038 kb on + strandat 189.039 kb on - strandat 189.039 kb on - strandat 189.039 kb on - strandat 189.039 kb on - strandat 189.039 kb on - strandat 189.039 kb on - strandat 189.088 kb on - strandat 189.135 kb on + strandat 189.144 kb on - strandat 189.144 kb on - strandat 189.147 kb on + strandat 189.148 kb on - strandat 189.148 kb on - strandat 189.148 kb on - strandat 189.177 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C
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184,551 + AO353_00805 0.72 -1.3
184,551 + AO353_00805 0.72 -1.1
184,551 + AO353_00805 0.72 +0.4
184,551 + AO353_00805 0.72 +1.7
184,551 + AO353_00805 0.72 +0.2
184,551 + AO353_00805 0.72 -1.4
184,551 + AO353_00805 0.72 -0.6
184,551 + AO353_00805 0.72 -0.1
184,551 + AO353_00805 0.72 -2.0
184,551 + AO353_00805 0.72 +1.4
184,551 + AO353_00805 0.72 -1.8
184,551 + AO353_00805 0.72 +0.4
184,552 - AO353_00805 0.73 +0.5
184,552 - AO353_00805 0.73 -0.4
184,552 - AO353_00805 0.73 -0.7
184,552 - AO353_00805 0.73 +1.7
184,552 - AO353_00805 0.73 -0.6
184,552 - AO353_00805 0.73 -2.1
184,552 - AO353_00805 0.73 +0.1
184,552 - AO353_00805 0.73 +2.0
184,552 - AO353_00805 0.73 +0.9
184,888 - AO353_00805 0.86 -1.1
184,888 - AO353_00805 0.86 +0.1
184,888 - AO353_00805 0.86 +1.1
184,888 - AO353_00805 0.86 +2.5
184,888 - AO353_00805 0.86 +1.3
184,888 - AO353_00805 0.86 -0.6
184,888 - AO353_00805 0.86 -1.3
184,888 - AO353_00805 0.86 -1.6
184,888 - AO353_00805 0.86 +0.1
184,888 - AO353_00805 0.86 -0.9
184,888 - AO353_00805 0.86 -0.7
184,888 - AO353_00805 0.86 -0.6
184,888 - AO353_00805 0.86 -0.9
184,888 - AO353_00805 0.86 -0.7
184,888 - AO353_00805 0.86 +0.7
184,969 - AO353_00805 0.90 -0.1
184,969 - AO353_00805 0.90 -1.3
184,993 - +1.7
185,010 + -0.7
185,011 - +1.7
185,011 - +0.1
185,011 - -2.4
185,011 - -0.1
185,011 - -2.6
185,236 + -0.1
185,390 + AO353_00810 0.53 +0.1
185,390 + AO353_00810 0.53 -0.6
185,390 + AO353_00810 0.53 +1.6
185,390 + AO353_00810 0.53 +2.0
185,390 + AO353_00810 0.53 +0.7
185,390 + AO353_00810 0.53 +2.1
185,391 - AO353_00810 0.53 +0.1
185,725 + +2.7
185,851 + AO353_00815 0.11 +0.4
185,851 + AO353_00815 0.11 -0.6
185,851 + AO353_00815 0.11 -0.6
185,851 + AO353_00815 0.11 +0.4
185,851 + AO353_00815 0.11 -1.7
185,851 + AO353_00815 0.11 -0.4
185,851 + AO353_00815 0.11 -0.9
185,851 + AO353_00815 0.11 -0.6
185,851 + AO353_00815 0.11 -0.9
185,851 + AO353_00815 0.11 -0.6
185,851 + AO353_00815 0.11 +0.3
185,851 + AO353_00815 0.11 -0.9
185,851 + AO353_00815 0.11 +0.4
185,851 + AO353_00815 0.11 +1.3
185,851 + AO353_00815 0.11 +2.3
185,851 + AO353_00815 0.11 -0.4
185,851 + AO353_00815 0.11 -1.0
185,851 + AO353_00815 0.11 -0.9
185,851 + AO353_00815 0.11 +0.9
185,851 + AO353_00815 0.11 +1.0
185,851 + AO353_00815 0.11 +0.5
185,851 + AO353_00815 0.11 -0.6
185,852 - AO353_00815 0.12 +1.1
185,852 - AO353_00815 0.12 -0.9
185,852 - AO353_00815 0.12 -0.6
185,852 - AO353_00815 0.12 +1.7
185,852 - AO353_00815 0.12 -1.3
185,852 - AO353_00815 0.12 -0.6
185,852 - AO353_00815 0.12 +0.9
185,852 - AO353_00815 0.12 +0.1
185,852 - AO353_00815 0.12 -0.2
185,852 - AO353_00815 0.12 -0.6
185,852 - AO353_00815 0.12 -0.9
185,852 - AO353_00815 0.12 -0.6
185,852 - AO353_00815 0.12 -0.7
185,852 - AO353_00815 0.12 +0.1
185,852 - AO353_00815 0.12 +1.1
185,852 - AO353_00815 0.12 -1.7
185,852 - AO353_00815 0.12 +1.7
185,852 - AO353_00815 0.12 +1.7
185,853 + AO353_00815 0.12 -1.7
185,853 + AO353_00815 0.12 +0.7
185,853 + AO353_00815 0.12 +1.7
185,853 + AO353_00815 0.12 +0.4
185,853 + AO353_00815 0.12 -1.1
185,854 - AO353_00815 0.12 +1.3
185,854 - AO353_00815 0.12 -0.6
185,881 + AO353_00815 0.13 -0.4
185,881 + AO353_00815 0.13 +2.7
185,881 + AO353_00815 0.13 -0.1
185,881 + AO353_00815 0.13 +1.7
185,881 + AO353_00815 0.13 +0.4
185,881 + AO353_00815 0.13 +1.3
185,881 + AO353_00815 0.13 -0.1
185,882 - AO353_00815 0.13 +0.6
185,882 - AO353_00815 0.13 -0.0
185,882 - AO353_00815 0.13 +0.1
185,882 - AO353_00815 0.13 +0.6
185,882 - AO353_00815 0.13 -0.1
185,882 - AO353_00815 0.13 -0.3
185,882 - AO353_00815 0.13 -1.7
185,882 - AO353_00815 0.13 -0.3
185,882 - AO353_00815 0.13 +1.7
185,884 + AO353_00815 0.13 +1.1
185,884 + AO353_00815 0.13 +0.1
185,885 - AO353_00815 0.13 +2.1
185,885 - AO353_00815 0.13 +0.7
185,937 + AO353_00815 0.15 -1.3
185,937 + AO353_00815 0.15 -0.6
185,938 - AO353_00815 0.15 +0.7
185,975 - AO353_00815 0.16 +0.3
186,013 + AO353_00815 0.17 +0.4
186,013 + AO353_00815 0.17 +0.7
186,013 + AO353_00815 0.17 +1.5
186,013 + AO353_00815 0.17 -0.0
186,013 + AO353_00815 0.17 -2.1
186,013 + AO353_00815 0.17 -0.9
186,013 + AO353_00815 0.17 +2.3
186,014 - AO353_00815 0.17 +0.4
186,014 - AO353_00815 0.17 -0.8
186,014 - AO353_00815 0.17 -1.3
186,014 - AO353_00815 0.17 -2.1
186,014 - AO353_00815 0.17 -0.9
186,067 + AO353_00815 0.19 +0.1
186,153 + AO353_00815 0.23 -1.6
186,153 + AO353_00815 0.23 -0.3
186,154 - AO353_00815 0.23 -0.9
186,154 - AO353_00815 0.23 +2.3
186,323 - AO353_00815 0.29 -0.6
186,323 - AO353_00815 0.29 -0.4
186,323 - AO353_00815 0.29 -0.6
186,323 - AO353_00815 0.29 +0.1
186,643 + AO353_00815 0.41 -1.4
186,662 + AO353_00815 0.41 -1.3
187,078 + AO353_00815 0.57 -2.7
187,079 - AO353_00815 0.57 +0.3
187,079 - AO353_00815 0.57 +0.9
187,079 - AO353_00815 0.57 -0.3
187,079 - AO353_00815 0.57 +0.1
187,079 - AO353_00815 0.57 -0.7
187,079 - AO353_00815 0.57 +2.4
187,569 + AO353_00815 0.75 +0.8
187,570 - AO353_00815 0.75 -0.6
187,570 - AO353_00815 0.75 +0.1
187,570 - AO353_00815 0.75 -0.1
187,709 + AO353_00815 0.80 -0.3
187,709 + AO353_00815 0.80 -0.6
187,710 - AO353_00815 0.80 +0.5
187,710 - AO353_00815 0.80 +1.1
187,870 + AO353_00815 0.86 +1.7
187,870 + AO353_00815 0.86 -2.2
188,261 + -0.9
188,261 + +0.1
188,261 + -0.3
188,261 + -0.3
188,261 + +1.7
188,262 - -1.1
188,335 - -0.3
188,358 + AO353_00820 0.12 +1.7
188,358 + AO353_00820 0.12 +0.9
188,358 + AO353_00820 0.12 +0.7
188,358 + AO353_00820 0.12 +1.1
188,358 + AO353_00820 0.12 +0.7
188,358 + AO353_00820 0.12 +0.1
188,358 + AO353_00820 0.12 +1.3
188,358 + AO353_00820 0.12 +0.9
188,358 + AO353_00820 0.12 +0.1
188,358 + AO353_00820 0.12 +0.3
188,359 - AO353_00820 0.12 -0.7
188,359 - AO353_00820 0.12 +0.7
188,359 - AO353_00820 0.12 +0.1
188,359 - AO353_00820 0.12 -0.9
188,489 + AO353_00820 0.29 -0.4
188,647 + AO353_00820 0.49 -0.6
188,647 + AO353_00820 0.49 -1.3
188,648 - AO353_00820 0.49 -0.9
188,682 + AO353_00820 0.54 +0.9
188,722 + AO353_00820 0.59 -0.3
188,722 + AO353_00820 0.59 +1.7
188,723 - AO353_00820 0.59 +0.7
188,765 + AO353_00820 0.64 +0.0
188,765 + AO353_00820 0.64 +2.7
188,765 + AO353_00820 0.64 -0.3
188,765 + AO353_00820 0.64 +0.7
188,765 + AO353_00820 0.64 -0.3
188,765 + AO353_00820 0.64 +1.7
188,766 - AO353_00820 0.64 +0.1
188,766 - AO353_00820 0.64 -0.3
188,766 - AO353_00820 0.64 +0.7
188,766 - AO353_00820 0.64 +0.7
188,766 - AO353_00820 0.64 -0.9
189,007 + -0.9
189,008 - -0.6
189,008 - +3.7
189,038 + -0.3
189,038 + -0.3
189,038 + -0.7
189,038 + +0.1
189,038 + +0.4
189,039 - -0.6
189,039 - +0.1
189,039 - -1.1
189,039 - -1.6
189,039 - -1.0
189,039 - +1.7
189,088 - +1.3
189,135 + +0.7
189,144 - +0.7
189,144 - +1.7
189,147 + +1.7
189,148 - +0.7
189,148 - +0.1
189,148 - +1.7
189,177 - +1.7

Or see this region's nucleotide sequence