Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00810

Experiment: Nitrate reduction, replicate C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00805 and AO353_00810 overlap by 4 nucleotidesAO353_00810 and AO353_00815 overlap by 1 nucleotides AO353_00805: AO353_00805 - Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data), at 182,772 to 185,225 _00805 AO353_00810: AO353_00810 - Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data), at 185,222 to 185,539 _00810 AO353_00815: AO353_00815 - Nitrate reductase (EC 1.7.99.4) (from data), at 185,539 to 188,256 _00815 Position (kb) 185 186Strain fitness (log2 ratio) -2 -1 0 1 2at 184.320 kb on + strand, within AO353_00805at 184.320 kb on + strand, within AO353_00805at 184.320 kb on + strand, within AO353_00805at 184.320 kb on + strand, within AO353_00805at 184.321 kb on - strand, within AO353_00805at 184.374 kb on + strand, within AO353_00805at 184.374 kb on + strand, within AO353_00805at 184.374 kb on + strand, within AO353_00805at 184.374 kb on + strandat 184.374 kb on + strand, within AO353_00805at 184.374 kb on + strand, within AO353_00805at 184.374 kb on + strand, within AO353_00805at 184.375 kb on - strand, within AO353_00805at 184.375 kb on - strand, within AO353_00805at 184.375 kb on - strand, within AO353_00805at 184.375 kb on - strand, within AO353_00805at 184.375 kb on - strand, within AO353_00805at 184.375 kb on - strand, within AO353_00805at 184.375 kb on - strand, within AO353_00805at 184.377 kb on + strand, within AO353_00805at 184.377 kb on + strand, within AO353_00805at 184.377 kb on + strand, within AO353_00805at 184.377 kb on + strand, within AO353_00805at 184.378 kb on - strand, within AO353_00805at 184.378 kb on - strandat 184.378 kb on - strand, within AO353_00805at 184.473 kb on + strand, within AO353_00805at 184.473 kb on + strand, within AO353_00805at 184.473 kb on + strand, within AO353_00805at 184.473 kb on + strand, within AO353_00805at 184.474 kb on - strand, within AO353_00805at 184.474 kb on - strand, within AO353_00805at 184.474 kb on - strand, within AO353_00805at 184.474 kb on - strand, within AO353_00805at 184.474 kb on - strand, within AO353_00805at 184.474 kb on - strand, within AO353_00805at 184.474 kb on - strand, within AO353_00805at 184.474 kb on - strand, within AO353_00805at 184.474 kb on - strand, within AO353_00805at 184.474 kb on - strand, within AO353_00805at 184.480 kb on + strand, within AO353_00805at 184.481 kb on - strand, within AO353_00805at 184.481 kb on - strand, within AO353_00805at 184.551 kb on + strand, within AO353_00805at 184.551 kb on + strand, within AO353_00805at 184.551 kb on + strand, within AO353_00805at 184.551 kb on + strand, within AO353_00805at 184.551 kb on + strand, within AO353_00805at 184.551 kb on + strand, within AO353_00805at 184.551 kb on + strand, within AO353_00805at 184.551 kb on + strand, within AO353_00805at 184.551 kb on + strand, within AO353_00805at 184.551 kb on + strand, within AO353_00805at 184.551 kb on + strand, within AO353_00805at 184.551 kb on + strand, within AO353_00805at 184.552 kb on - strand, within AO353_00805at 184.552 kb on - strand, within AO353_00805at 184.552 kb on - strand, within AO353_00805at 184.552 kb on - strand, within AO353_00805at 184.552 kb on - strand, within AO353_00805at 184.552 kb on - strand, within AO353_00805at 184.552 kb on - strand, within AO353_00805at 184.552 kb on - strand, within AO353_00805at 184.552 kb on - strand, within AO353_00805at 184.888 kb on - strand, within AO353_00805at 184.888 kb on - strand, within AO353_00805at 184.888 kb on - strand, within AO353_00805at 184.888 kb on - strand, within AO353_00805at 184.888 kb on - strand, within AO353_00805at 184.888 kb on - strand, within AO353_00805at 184.888 kb on - strand, within AO353_00805at 184.888 kb on - strand, within AO353_00805at 184.888 kb on - strand, within AO353_00805at 184.888 kb on - strand, within AO353_00805at 184.888 kb on - strand, within AO353_00805at 184.888 kb on - strand, within AO353_00805at 184.888 kb on - strand, within AO353_00805at 184.888 kb on - strand, within AO353_00805at 184.888 kb on - strand, within AO353_00805at 184.969 kb on - strand, within AO353_00805at 184.969 kb on - strand, within AO353_00805at 184.993 kb on - strandat 185.010 kb on + strandat 185.011 kb on - strandat 185.011 kb on - strandat 185.011 kb on - strandat 185.011 kb on - strandat 185.011 kb on - strandat 185.236 kb on + strandat 185.390 kb on + strand, within AO353_00810at 185.390 kb on + strand, within AO353_00810at 185.390 kb on + strand, within AO353_00810at 185.390 kb on + strand, within AO353_00810at 185.390 kb on + strand, within AO353_00810at 185.390 kb on + strand, within AO353_00810at 185.391 kb on - strand, within AO353_00810at 185.725 kb on + strandat 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.851 kb on + strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.852 kb on - strand, within AO353_00815at 185.853 kb on + strand, within AO353_00815at 185.853 kb on + strand, within AO353_00815at 185.853 kb on + strand, within AO353_00815at 185.853 kb on + strand, within AO353_00815at 185.853 kb on + strand, within AO353_00815at 185.854 kb on - strand, within AO353_00815at 185.854 kb on - strand, within AO353_00815at 185.881 kb on + strand, within AO353_00815at 185.881 kb on + strand, within AO353_00815at 185.881 kb on + strand, within AO353_00815at 185.881 kb on + strand, within AO353_00815at 185.881 kb on + strand, within AO353_00815at 185.881 kb on + strand, within AO353_00815at 185.881 kb on + strand, within AO353_00815at 185.882 kb on - strand, within AO353_00815at 185.882 kb on - strand, within AO353_00815at 185.882 kb on - strand, within AO353_00815at 185.882 kb on - strand, within AO353_00815at 185.882 kb on - strand, within AO353_00815at 185.882 kb on - strand, within AO353_00815at 185.882 kb on - strand, within AO353_00815at 185.882 kb on - strand, within AO353_00815at 185.882 kb on - strand, within AO353_00815at 185.884 kb on + strand, within AO353_00815at 185.884 kb on + strand, within AO353_00815at 185.885 kb on - strand, within AO353_00815at 185.885 kb on - strand, within AO353_00815at 185.937 kb on + strand, within AO353_00815at 185.937 kb on + strand, within AO353_00815at 185.938 kb on - strand, within AO353_00815at 185.975 kb on - strand, within AO353_00815at 186.013 kb on + strand, within AO353_00815at 186.013 kb on + strand, within AO353_00815at 186.013 kb on + strand, within AO353_00815at 186.013 kb on + strand, within AO353_00815at 186.013 kb on + strand, within AO353_00815at 186.013 kb on + strand, within AO353_00815at 186.013 kb on + strand, within AO353_00815at 186.014 kb on - strand, within AO353_00815at 186.014 kb on - strand, within AO353_00815at 186.014 kb on - strand, within AO353_00815at 186.014 kb on - strand, within AO353_00815at 186.014 kb on - strand, within AO353_00815at 186.067 kb on + strand, within AO353_00815at 186.153 kb on + strand, within AO353_00815at 186.153 kb on + strand, within AO353_00815at 186.154 kb on - strand, within AO353_00815at 186.154 kb on - strand, within AO353_00815at 186.323 kb on - strand, within AO353_00815at 186.323 kb on - strand, within AO353_00815at 186.323 kb on - strand, within AO353_00815at 186.323 kb on - strand, within AO353_00815

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C
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184,320 + AO353_00805 0.63 +1.0
184,320 + AO353_00805 0.63 -0.7
184,320 + AO353_00805 0.63 -0.9
184,320 + AO353_00805 0.63 -1.5
184,321 - AO353_00805 0.63 +0.4
184,374 + AO353_00805 0.65 -2.2
184,374 + AO353_00805 0.65 +0.7
184,374 + AO353_00805 0.65 -1.6
184,374 + +0.7
184,374 + AO353_00805 0.65 +0.9
184,374 + AO353_00805 0.65 -2.1
184,374 + AO353_00805 0.65 -0.9
184,375 - AO353_00805 0.65 +0.1
184,375 - AO353_00805 0.65 -2.6
184,375 - AO353_00805 0.65 +1.1
184,375 - AO353_00805 0.65 -0.3
184,375 - AO353_00805 0.65 -0.9
184,375 - AO353_00805 0.65 -0.5
184,375 - AO353_00805 0.65 +0.4
184,377 + AO353_00805 0.65 -1.4
184,377 + AO353_00805 0.65 +1.1
184,377 + AO353_00805 0.65 +1.3
184,377 + AO353_00805 0.65 -1.4
184,378 - AO353_00805 0.65 +1.5
184,378 - -1.4
184,378 - AO353_00805 0.65 -1.3
184,473 + AO353_00805 0.69 -1.5
184,473 + AO353_00805 0.69 +0.1
184,473 + AO353_00805 0.69 -2.3
184,473 + AO353_00805 0.69 -0.9
184,474 - AO353_00805 0.69 +0.4
184,474 - AO353_00805 0.69 +0.3
184,474 - AO353_00805 0.69 +0.4
184,474 - AO353_00805 0.69 -0.7
184,474 - AO353_00805 0.69 -0.4
184,474 - AO353_00805 0.69 +0.7
184,474 - AO353_00805 0.69 -0.6
184,474 - AO353_00805 0.69 -1.3
184,474 - AO353_00805 0.69 -0.7
184,474 - AO353_00805 0.69 -1.3
184,480 + AO353_00805 0.70 -1.6
184,481 - AO353_00805 0.70 +0.1
184,481 - AO353_00805 0.70 -1.8
184,551 + AO353_00805 0.72 -1.3
184,551 + AO353_00805 0.72 -1.1
184,551 + AO353_00805 0.72 +0.4
184,551 + AO353_00805 0.72 +1.7
184,551 + AO353_00805 0.72 +0.2
184,551 + AO353_00805 0.72 -1.4
184,551 + AO353_00805 0.72 -0.6
184,551 + AO353_00805 0.72 -0.1
184,551 + AO353_00805 0.72 -2.0
184,551 + AO353_00805 0.72 +1.4
184,551 + AO353_00805 0.72 -1.8
184,551 + AO353_00805 0.72 +0.4
184,552 - AO353_00805 0.73 +0.5
184,552 - AO353_00805 0.73 -0.4
184,552 - AO353_00805 0.73 -0.7
184,552 - AO353_00805 0.73 +1.7
184,552 - AO353_00805 0.73 -0.6
184,552 - AO353_00805 0.73 -2.1
184,552 - AO353_00805 0.73 +0.1
184,552 - AO353_00805 0.73 +2.0
184,552 - AO353_00805 0.73 +0.9
184,888 - AO353_00805 0.86 -1.1
184,888 - AO353_00805 0.86 +0.1
184,888 - AO353_00805 0.86 +1.1
184,888 - AO353_00805 0.86 +2.5
184,888 - AO353_00805 0.86 +1.3
184,888 - AO353_00805 0.86 -0.6
184,888 - AO353_00805 0.86 -1.3
184,888 - AO353_00805 0.86 -1.6
184,888 - AO353_00805 0.86 +0.1
184,888 - AO353_00805 0.86 -0.9
184,888 - AO353_00805 0.86 -0.7
184,888 - AO353_00805 0.86 -0.6
184,888 - AO353_00805 0.86 -0.9
184,888 - AO353_00805 0.86 -0.7
184,888 - AO353_00805 0.86 +0.7
184,969 - AO353_00805 0.90 -0.1
184,969 - AO353_00805 0.90 -1.3
184,993 - +1.7
185,010 + -0.7
185,011 - +1.7
185,011 - +0.1
185,011 - -2.4
185,011 - -0.1
185,011 - -2.6
185,236 + -0.1
185,390 + AO353_00810 0.53 +0.1
185,390 + AO353_00810 0.53 -0.6
185,390 + AO353_00810 0.53 +1.6
185,390 + AO353_00810 0.53 +2.0
185,390 + AO353_00810 0.53 +0.7
185,390 + AO353_00810 0.53 +2.1
185,391 - AO353_00810 0.53 +0.1
185,725 + +2.7
185,851 + AO353_00815 0.11 +0.4
185,851 + AO353_00815 0.11 -0.6
185,851 + AO353_00815 0.11 -0.6
185,851 + AO353_00815 0.11 +0.4
185,851 + AO353_00815 0.11 -1.7
185,851 + AO353_00815 0.11 -0.4
185,851 + AO353_00815 0.11 -0.9
185,851 + AO353_00815 0.11 -0.6
185,851 + AO353_00815 0.11 -0.9
185,851 + AO353_00815 0.11 -0.6
185,851 + AO353_00815 0.11 +0.3
185,851 + AO353_00815 0.11 -0.9
185,851 + AO353_00815 0.11 +0.4
185,851 + AO353_00815 0.11 +1.3
185,851 + AO353_00815 0.11 +2.3
185,851 + AO353_00815 0.11 -0.4
185,851 + AO353_00815 0.11 -1.0
185,851 + AO353_00815 0.11 -0.9
185,851 + AO353_00815 0.11 +0.9
185,851 + AO353_00815 0.11 +1.0
185,851 + AO353_00815 0.11 +0.5
185,851 + AO353_00815 0.11 -0.6
185,852 - AO353_00815 0.12 +1.1
185,852 - AO353_00815 0.12 -0.9
185,852 - AO353_00815 0.12 -0.6
185,852 - AO353_00815 0.12 +1.7
185,852 - AO353_00815 0.12 -1.3
185,852 - AO353_00815 0.12 -0.6
185,852 - AO353_00815 0.12 +0.9
185,852 - AO353_00815 0.12 +0.1
185,852 - AO353_00815 0.12 -0.2
185,852 - AO353_00815 0.12 -0.6
185,852 - AO353_00815 0.12 -0.9
185,852 - AO353_00815 0.12 -0.6
185,852 - AO353_00815 0.12 -0.7
185,852 - AO353_00815 0.12 +0.1
185,852 - AO353_00815 0.12 +1.1
185,852 - AO353_00815 0.12 -1.7
185,852 - AO353_00815 0.12 +1.7
185,852 - AO353_00815 0.12 +1.7
185,853 + AO353_00815 0.12 -1.7
185,853 + AO353_00815 0.12 +0.7
185,853 + AO353_00815 0.12 +1.7
185,853 + AO353_00815 0.12 +0.4
185,853 + AO353_00815 0.12 -1.1
185,854 - AO353_00815 0.12 +1.3
185,854 - AO353_00815 0.12 -0.6
185,881 + AO353_00815 0.13 -0.4
185,881 + AO353_00815 0.13 +2.7
185,881 + AO353_00815 0.13 -0.1
185,881 + AO353_00815 0.13 +1.7
185,881 + AO353_00815 0.13 +0.4
185,881 + AO353_00815 0.13 +1.3
185,881 + AO353_00815 0.13 -0.1
185,882 - AO353_00815 0.13 +0.6
185,882 - AO353_00815 0.13 -0.0
185,882 - AO353_00815 0.13 +0.1
185,882 - AO353_00815 0.13 +0.6
185,882 - AO353_00815 0.13 -0.1
185,882 - AO353_00815 0.13 -0.3
185,882 - AO353_00815 0.13 -1.7
185,882 - AO353_00815 0.13 -0.3
185,882 - AO353_00815 0.13 +1.7
185,884 + AO353_00815 0.13 +1.1
185,884 + AO353_00815 0.13 +0.1
185,885 - AO353_00815 0.13 +2.1
185,885 - AO353_00815 0.13 +0.7
185,937 + AO353_00815 0.15 -1.3
185,937 + AO353_00815 0.15 -0.6
185,938 - AO353_00815 0.15 +0.7
185,975 - AO353_00815 0.16 +0.3
186,013 + AO353_00815 0.17 +0.4
186,013 + AO353_00815 0.17 +0.7
186,013 + AO353_00815 0.17 +1.5
186,013 + AO353_00815 0.17 -0.0
186,013 + AO353_00815 0.17 -2.1
186,013 + AO353_00815 0.17 -0.9
186,013 + AO353_00815 0.17 +2.3
186,014 - AO353_00815 0.17 +0.4
186,014 - AO353_00815 0.17 -0.8
186,014 - AO353_00815 0.17 -1.3
186,014 - AO353_00815 0.17 -2.1
186,014 - AO353_00815 0.17 -0.9
186,067 + AO353_00815 0.19 +0.1
186,153 + AO353_00815 0.23 -1.6
186,153 + AO353_00815 0.23 -0.3
186,154 - AO353_00815 0.23 -0.9
186,154 - AO353_00815 0.23 +2.3
186,323 - AO353_00815 0.29 -0.6
186,323 - AO353_00815 0.29 -0.4
186,323 - AO353_00815 0.29 -0.6
186,323 - AO353_00815 0.29 +0.1

Or see this region's nucleotide sequence