Experiment: Nitrate reduction, replicate C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00785 and AO353_00790 are separated by 15 nucleotides AO353_00790 and AO353_00795 are separated by 379 nucleotides AO353_00795 and AO353_00800 are separated by 7 nucleotides
AO353_00785: AO353_00785 - nitrate transporter, at 177,230 to 178,441
_00785
AO353_00790: AO353_00790 - histidine kinase, at 178,457 to 179,032
_00790
AO353_00795: AO353_00795 - MFS transporter, at 179,412 to 180,623
_00795
AO353_00800: AO353_00800 - protein kinase, at 180,631 to 182,301
_00800
Position (kb) 179
180
181 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 178.456 kb on + strand at 178.456 kb on + strand at 178.456 kb on + strand at 178.456 kb on + strand at 178.456 kb on + strand at 178.456 kb on + strand at 178.456 kb on + strand at 178.456 kb on + strand at 178.456 kb on + strand at 178.456 kb on + strand at 178.456 kb on + strand at 178.457 kb on - strand at 178.457 kb on - strand at 178.457 kb on - strand at 178.457 kb on - strand at 178.457 kb on - strand at 178.457 kb on - strand at 178.457 kb on - strand at 178.457 kb on - strand at 178.457 kb on - strand at 178.751 kb on + strand, within AO353_00790 at 178.751 kb on + strand, within AO353_00790 at 178.751 kb on + strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.940 kb on + strand, within AO353_00790 at 178.940 kb on + strand, within AO353_00790 at 178.940 kb on + strand, within AO353_00790 at 178.940 kb on + strand, within AO353_00790 at 178.940 kb on + strand, within AO353_00790 at 178.940 kb on + strand, within AO353_00790 at 178.940 kb on + strand, within AO353_00790 at 178.940 kb on + strand, within AO353_00790 at 178.941 kb on - strand, within AO353_00790 at 178.941 kb on - strand, within AO353_00790 at 178.941 kb on - strand, within AO353_00790 at 178.941 kb on - strand, within AO353_00790 at 179.102 kb on + strand at 179.112 kb on + strand at 179.112 kb on + strand at 179.112 kb on + strand at 179.113 kb on - strand at 179.188 kb on + strand at 179.192 kb on + strand at 179.193 kb on - strand at 179.196 kb on + strand at 179.196 kb on + strand at 179.218 kb on + strand at 179.254 kb on + strand at 179.254 kb on + strand at 179.255 kb on - strand at 179.255 kb on - strand at 179.255 kb on - strand at 179.469 kb on + strand at 179.469 kb on + strand at 179.469 kb on + strand at 179.470 kb on - strand at 179.496 kb on + strand at 179.496 kb on + strand at 179.497 kb on - strand at 179.497 kb on - strand at 179.716 kb on - strand, within AO353_00795 at 179.716 kb on - strand, within AO353_00795 at 179.716 kb on - strand, within AO353_00795 at 180.015 kb on + strand, within AO353_00795 at 180.015 kb on + strand, within AO353_00795 at 180.015 kb on + strand, within AO353_00795 at 180.015 kb on + strand, within AO353_00795 at 180.016 kb on - strand, within AO353_00795 at 180.016 kb on - strand, within AO353_00795 at 180.063 kb on + strand, within AO353_00795 at 180.064 kb on - strand, within AO353_00795 at 180.064 kb on - strand, within AO353_00795 at 180.114 kb on + strand, within AO353_00795 at 180.114 kb on + strand, within AO353_00795 at 180.114 kb on + strand, within AO353_00795 at 180.115 kb on - strand, within AO353_00795 at 180.156 kb on + strand, within AO353_00795 at 180.156 kb on + strand, within AO353_00795 at 180.156 kb on + strand, within AO353_00795 at 180.159 kb on + strand, within AO353_00795 at 180.159 kb on + strand, within AO353_00795 at 180.159 kb on + strand, within AO353_00795 at 180.159 kb on + strand, within AO353_00795 at 180.160 kb on - strand, within AO353_00795 at 180.160 kb on - strand, within AO353_00795 at 180.244 kb on + strand, within AO353_00795 at 180.245 kb on - strand, within AO353_00795 at 180.255 kb on + strand, within AO353_00795 at 180.255 kb on + strand, within AO353_00795 at 180.255 kb on + strand, within AO353_00795 at 180.256 kb on - strand, within AO353_00795 at 180.256 kb on - strand, within AO353_00795 at 180.256 kb on - strand, within AO353_00795 at 180.256 kb on - strand, within AO353_00795 at 180.256 kb on - strand, within AO353_00795 at 180.256 kb on - strand, within AO353_00795 at 180.309 kb on + strand, within AO353_00795 at 180.309 kb on + strand, within AO353_00795 at 180.309 kb on + strand, within AO353_00795 at 180.309 kb on + strand, within AO353_00795 at 180.310 kb on - strand, within AO353_00795 at 180.310 kb on - strand, within AO353_00795 at 180.310 kb on - strand, within AO353_00795 at 180.497 kb on + strand, within AO353_00795 at 180.497 kb on + strand, within AO353_00795 at 180.497 kb on + strand, within AO353_00795 at 180.497 kb on + strand, within AO353_00795 at 180.497 kb on + strand, within AO353_00795 at 180.497 kb on + strand, within AO353_00795 at 180.497 kb on + strand, within AO353_00795 at 180.497 kb on + strand, within AO353_00795 at 180.497 kb on + strand, within AO353_00795 at 180.498 kb on - strand, within AO353_00795 at 180.498 kb on - strand, within AO353_00795 at 180.501 kb on + strand, within AO353_00795 at 180.501 kb on + strand, within AO353_00795 at 180.501 kb on + strand, within AO353_00795 at 180.502 kb on - strand at 180.502 kb on - strand at 180.502 kb on - strand at 180.584 kb on + strand at 180.584 kb on + strand at 180.584 kb on + strand at 180.584 kb on + strand at 180.584 kb on + strand at 180.584 kb on + strand at 180.584 kb on + strand at 180.584 kb on + strand at 180.584 kb on + strand at 180.584 kb on + strand at 180.584 kb on + strand at 180.584 kb on + strand at 180.584 kb on + strand at 180.584 kb on + strand at 180.584 kb on + strand at 180.584 kb on + strand at 180.584 kb on + strand at 180.584 kb on + strand at 180.585 kb on - strand at 180.585 kb on - strand at 180.585 kb on - strand at 180.585 kb on - strand at 180.585 kb on - strand at 180.585 kb on - strand at 180.585 kb on - strand at 180.585 kb on - strand at 180.585 kb on - strand at 180.585 kb on - strand at 180.585 kb on - strand at 180.585 kb on - strand at 180.585 kb on - strand at 180.585 kb on - strand at 180.585 kb on - strand at 180.585 kb on - strand at 180.585 kb on - strand at 180.829 kb on + strand, within AO353_00800 at 180.829 kb on + strand, within AO353_00800 at 180.829 kb on + strand, within AO353_00800 at 180.829 kb on + strand, within AO353_00800 at 180.829 kb on + strand, within AO353_00800 at 180.830 kb on - strand, within AO353_00800 at 180.833 kb on - strand, within AO353_00800 at 180.833 kb on - strand, within AO353_00800 at 181.004 kb on - strand, within AO353_00800 at 181.004 kb on - strand, within AO353_00800 at 181.004 kb on - strand, within AO353_00800 at 181.004 kb on - strand, within AO353_00800 at 181.308 kb on - strand, within AO353_00800 at 181.456 kb on + strand, within AO353_00800 at 181.456 kb on + strand, within AO353_00800 at 181.456 kb on + strand, within AO353_00800 at 181.457 kb on - strand, within AO353_00800 at 181.457 kb on - strand, within AO353_00800
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C remove 178,456 + -0.3 178,456 + -1.1 178,456 + -1.6 178,456 + -0.9 178,456 + -1.4 178,456 + -0.9 178,456 + -0.1 178,456 + +0.8 178,456 + -1.4 178,456 + -0.9 178,456 + -1.6 178,457 - +0.1 178,457 - -0.6 178,457 - -1.3 178,457 - -0.6 178,457 - -2.5 178,457 - -1.9 178,457 - +0.1 178,457 - -0.9 178,457 - +0.1 178,751 + AO353_00790 0.51 +0.3 178,751 + AO353_00790 0.51 +0.1 178,751 + AO353_00790 0.51 -1.1 178,752 - AO353_00790 0.51 -0.6 178,752 - AO353_00790 0.51 +0.9 178,752 - AO353_00790 0.51 -0.3 178,752 - AO353_00790 0.51 +1.7 178,752 - AO353_00790 0.51 -1.1 178,752 - AO353_00790 0.51 +0.7 178,752 - AO353_00790 0.51 +3.3 178,752 - AO353_00790 0.51 +0.7 178,752 - AO353_00790 0.51 +0.6 178,752 - AO353_00790 0.51 -0.2 178,752 - AO353_00790 0.51 +1.7 178,752 - AO353_00790 0.51 -2.9 178,940 + AO353_00790 0.84 -1.3 178,940 + AO353_00790 0.84 -0.9 178,940 + AO353_00790 0.84 +1.7 178,940 + AO353_00790 0.84 +0.8 178,940 + AO353_00790 0.84 -0.6 178,940 + AO353_00790 0.84 -0.9 178,940 + AO353_00790 0.84 +0.3 178,940 + AO353_00790 0.84 -1.1 178,941 - AO353_00790 0.84 -0.1 178,941 - AO353_00790 0.84 -0.9 178,941 - AO353_00790 0.84 +0.5 178,941 - AO353_00790 0.84 +0.7 179,102 + -0.1 179,112 + +0.3 179,112 + -0.6 179,112 + -1.9 179,113 - -2.1 179,188 + -0.1 179,192 + -0.7 179,193 - +0.3 179,196 + -0.3 179,196 + -0.3 179,218 + -0.9 179,254 + -0.9 179,254 + -0.9 179,255 - +0.7 179,255 - -1.3 179,255 - +1.1 179,469 + +1.7 179,469 + +1.3 179,469 + -1.1 179,470 - +0.6 179,496 + -1.3 179,496 + -0.7 179,497 - +0.0 179,497 - -0.9 179,716 - AO353_00795 0.25 -0.7 179,716 - AO353_00795 0.25 -0.1 179,716 - AO353_00795 0.25 +2.3 180,015 + AO353_00795 0.50 +1.2 180,015 + AO353_00795 0.50 +0.7 180,015 + AO353_00795 0.50 -0.3 180,015 + AO353_00795 0.50 -0.4 180,016 - AO353_00795 0.50 -0.3 180,016 - AO353_00795 0.50 -0.2 180,063 + AO353_00795 0.54 -0.1 180,064 - AO353_00795 0.54 +2.6 180,064 - AO353_00795 0.54 +0.1 180,114 + AO353_00795 0.58 -0.6 180,114 + AO353_00795 0.58 +0.3 180,114 + AO353_00795 0.58 +0.7 180,115 - AO353_00795 0.58 -0.1 180,156 + AO353_00795 0.61 -0.5 180,156 + AO353_00795 0.61 -1.3 180,156 + AO353_00795 0.61 -0.5 180,159 + AO353_00795 0.62 +2.3 180,159 + AO353_00795 0.62 -0.3 180,159 + AO353_00795 0.62 +1.5 180,159 + AO353_00795 0.62 +0.1 180,160 - AO353_00795 0.62 +0.7 180,160 - AO353_00795 0.62 +0.0 180,244 + AO353_00795 0.69 -0.5 180,245 - AO353_00795 0.69 -0.7 180,255 + AO353_00795 0.70 -1.1 180,255 + AO353_00795 0.70 -0.3 180,255 + AO353_00795 0.70 +0.1 180,256 - AO353_00795 0.70 +0.0 180,256 - AO353_00795 0.70 -1.3 180,256 - AO353_00795 0.70 -0.2 180,256 - AO353_00795 0.70 +2.3 180,256 - AO353_00795 0.70 +1.3 180,256 - AO353_00795 0.70 +0.1 180,309 + AO353_00795 0.74 -1.7 180,309 + AO353_00795 0.74 +0.1 180,309 + AO353_00795 0.74 +0.2 180,309 + AO353_00795 0.74 -0.0 180,310 - AO353_00795 0.74 -1.4 180,310 - AO353_00795 0.74 +0.4 180,310 - AO353_00795 0.74 +1.3 180,497 + AO353_00795 0.90 -0.6 180,497 + AO353_00795 0.90 -0.9 180,497 + AO353_00795 0.90 -1.1 180,497 + AO353_00795 0.90 -0.3 180,497 + AO353_00795 0.90 -1.3 180,497 + AO353_00795 0.90 +1.7 180,497 + AO353_00795 0.90 +0.1 180,497 + AO353_00795 0.90 +0.1 180,497 + AO353_00795 0.90 +1.7 180,498 - AO353_00795 0.90 +0.5 180,498 - AO353_00795 0.90 +0.4 180,501 + AO353_00795 0.90 -0.6 180,501 + AO353_00795 0.90 +0.7 180,501 + AO353_00795 0.90 +0.1 180,502 - -0.1 180,502 - -0.3 180,502 - -0.4 180,584 + -1.0 180,584 + +1.1 180,584 + -1.3 180,584 + -0.0 180,584 + +1.7 180,584 + +1.0 180,584 + -0.3 180,584 + -0.1 180,584 + +0.4 180,584 + -0.6 180,584 + +0.4 180,584 + +0.2 180,584 + +1.7 180,584 + -0.3 180,584 + -0.6 180,584 + +1.7 180,584 + -0.1 180,584 + -0.9 180,585 - +0.7 180,585 - +1.4 180,585 - +0.7 180,585 - +0.2 180,585 - +1.1 180,585 - +1.4 180,585 - +0.7 180,585 - -0.6 180,585 - -1.1 180,585 - +0.1 180,585 - +0.7 180,585 - -2.7 180,585 - +1.7 180,585 - +0.1 180,585 - +1.1 180,585 - +0.1 180,585 - -0.9 180,829 + AO353_00800 0.12 +0.7 180,829 + AO353_00800 0.12 +0.7 180,829 + AO353_00800 0.12 +0.4 180,829 + AO353_00800 0.12 -1.4 180,829 + AO353_00800 0.12 +0.1 180,830 - AO353_00800 0.12 -2.7 180,833 - AO353_00800 0.12 +0.3 180,833 - AO353_00800 0.12 -1.7 181,004 - AO353_00800 0.22 -0.0 181,004 - AO353_00800 0.22 -0.3 181,004 - AO353_00800 0.22 -0.9 181,004 - AO353_00800 0.22 -1.4 181,308 - AO353_00800 0.41 -2.1 181,456 + AO353_00800 0.49 +0.5 181,456 + AO353_00800 0.49 +1.5 181,456 + AO353_00800 0.49 -0.9 181,457 - AO353_00800 0.49 -0.3 181,457 - AO353_00800 0.49 +1.7
Or see this region's nucleotide sequence