Experiment: Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0090 and BT0091 are separated by 18 nucleotides BT0091 and BT0092 are separated by 4 nucleotides BT0092 and BT0093 are separated by 28 nucleotides
BT0090: BT0090 - conserved protein found in conjugate transposon (NCBI ptt file), at 83,372 to 84,397
BT0090
BT0091: BT0091 - conserved protein found in conjugate transposon (NCBI ptt file), at 84,416 to 85,045
BT0091
BT0092: BT0092 - conserved protein found in conjugate transposon (NCBI ptt file), at 85,050 to 85,406
BT0092
BT0093: BT0093 - conserved protein found in conjugate transposon (NCBI ptt file), at 85,435 to 87,939
BT0093
Position (kb) 84
85
86 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 83.465 kb on - strand at 83.567 kb on + strand, within BT0090 at 83.572 kb on + strand, within BT0090 at 83.650 kb on + strand, within BT0090 at 83.650 kb on + strand, within BT0090 at 83.721 kb on + strand, within BT0090 at 83.763 kb on + strand, within BT0090 at 83.763 kb on + strand, within BT0090 at 83.764 kb on - strand, within BT0090 at 83.764 kb on - strand, within BT0090 at 83.765 kb on + strand, within BT0090 at 83.766 kb on - strand, within BT0090 at 84.045 kb on + strand, within BT0090 at 84.046 kb on - strand, within BT0090 at 84.106 kb on + strand, within BT0090 at 84.112 kb on + strand, within BT0090 at 84.151 kb on + strand, within BT0090 at 84.179 kb on - strand, within BT0090 at 84.271 kb on - strand, within BT0090 at 84.271 kb on - strand, within BT0090 at 84.271 kb on - strand, within BT0090 at 84.338 kb on - strand at 84.397 kb on + strand at 84.398 kb on - strand at 84.417 kb on + strand at 84.444 kb on + strand at 84.520 kb on - strand, within BT0091 at 84.556 kb on + strand, within BT0091 at 84.558 kb on + strand, within BT0091 at 84.559 kb on - strand, within BT0091 at 84.672 kb on + strand, within BT0091 at 84.673 kb on - strand, within BT0091 at 84.678 kb on + strand, within BT0091 at 84.748 kb on - strand, within BT0091 at 84.815 kb on - strand, within BT0091 at 84.893 kb on - strand, within BT0091 at 85.029 kb on - strand at 85.081 kb on + strand at 85.189 kb on + strand, within BT0092 at 85.371 kb on + strand at 85.588 kb on + strand at 85.711 kb on + strand, within BT0093 at 85.789 kb on + strand, within BT0093
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.2 vol% remove 83,465 - +0.0 83,567 + BT0090 0.19 -0.4 83,572 + BT0090 0.19 -3.2 83,650 + BT0090 0.27 -0.9 83,650 + BT0090 0.27 -1.0 83,721 + BT0090 0.34 -1.0 83,763 + BT0090 0.38 -0.6 83,763 + BT0090 0.38 -2.5 83,764 - BT0090 0.38 -1.3 83,764 - BT0090 0.38 -1.0 83,765 + BT0090 0.38 -1.0 83,766 - BT0090 0.38 -1.6 84,045 + BT0090 0.66 -2.8 84,046 - BT0090 0.66 -2.0 84,106 + BT0090 0.72 -1.6 84,112 + BT0090 0.72 +0.0 84,151 + BT0090 0.76 +0.0 84,179 - BT0090 0.79 +0.0 84,271 - BT0090 0.88 +0.0 84,271 - BT0090 0.88 -0.3 84,271 - BT0090 0.88 +0.0 84,338 - -1.6 84,397 + -1.0 84,398 - -1.3 84,417 + +0.0 84,444 + -1.4 84,520 - BT0091 0.17 +0.0 84,556 + BT0091 0.22 -3.6 84,558 + BT0091 0.23 +0.0 84,559 - BT0091 0.23 -3.9 84,672 + BT0091 0.41 -1.4 84,673 - BT0091 0.41 -1.0 84,678 + BT0091 0.42 -1.4 84,748 - BT0091 0.53 -2.0 84,815 - BT0091 0.63 -1.0 84,893 - BT0091 0.76 +0.0 85,029 - +0.0 85,081 + -1.6 85,189 + BT0092 0.39 -4.3 85,371 + -1.4 85,588 + -1.1 85,711 + BT0093 0.11 -1.4 85,789 + BT0093 0.14 -1.2
Or see this region's nucleotide sequence