Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5014 and Pf6N2E2_5015 are separated by 27 nucleotides Pf6N2E2_5015 and Pf6N2E2_5016 are separated by 40 nucleotides Pf6N2E2_5016 and Pf6N2E2_5017 overlap by 8 nucleotides
Pf6N2E2_5014 - Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE, at 5,780,581 to 5,782,104
_5014
Pf6N2E2_5015 - Magnesium and cobalt efflux protein CorC, at 5,782,132 to 5,782,971
_5015
Pf6N2E2_5016 - Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly, at 5,783,012 to 5,783,470
_5016
Pf6N2E2_5017 - Phosphate starvation-inducible protein PhoH, predicted ATPase, at 5,783,463 to 5,784,473
_5017
Position (kb) 5782
5783 Strain fitness (log2 ratio) -1
0
1 at 5782.380 kb on - strand, within Pf6N2E2_5015 at 5782.380 kb on - strand, within Pf6N2E2_5015 at 5782.380 kb on - strand, within Pf6N2E2_5015 at 5782.380 kb on - strand, within Pf6N2E2_5015 at 5782.380 kb on - strand, within Pf6N2E2_5015 at 5782.380 kb on - strand, within Pf6N2E2_5015 at 5782.380 kb on - strand, within Pf6N2E2_5015 at 5782.380 kb on - strand, within Pf6N2E2_5015 at 5782.380 kb on - strand, within Pf6N2E2_5015 at 5782.380 kb on - strand, within Pf6N2E2_5015 at 5783.011 kb on - strand at 5783.011 kb on - strand at 5783.011 kb on - strand at 5783.011 kb on - strand at 5783.011 kb on - strand at 5783.011 kb on - strand at 5783.011 kb on - strand at 5783.011 kb on - strand at 5783.807 kb on - strand, within Pf6N2E2_5017 at 5783.807 kb on - strand, within Pf6N2E2_5017 at 5783.807 kb on - strand, within Pf6N2E2_5017 at 5783.807 kb on - strand, within Pf6N2E2_5017 at 5783.807 kb on - strand, within Pf6N2E2_5017 at 5783.891 kb on - strand, within Pf6N2E2_5017 at 5783.906 kb on - strand, within Pf6N2E2_5017 at 5783.906 kb on - strand, within Pf6N2E2_5017
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 5,782,380 - Pf6N2E2_5015 0.30 +0.7 5,782,380 - Pf6N2E2_5015 0.30 -0.7 5,782,380 - Pf6N2E2_5015 0.30 +1.3 5,782,380 - Pf6N2E2_5015 0.30 +1.1 5,782,380 - Pf6N2E2_5015 0.30 +0.3 5,782,380 - Pf6N2E2_5015 0.30 +0.0 5,782,380 - Pf6N2E2_5015 0.30 +0.3 5,782,380 - Pf6N2E2_5015 0.30 -1.0 5,782,380 - Pf6N2E2_5015 0.30 +0.2 5,782,380 - Pf6N2E2_5015 0.30 +1.2 5,783,011 - -0.1 5,783,011 - +0.2 5,783,011 - -0.3 5,783,011 - +1.4 5,783,011 - -0.5 5,783,011 - +1.4 5,783,011 - +0.8 5,783,011 - -0.1 5,783,807 - Pf6N2E2_5017 0.34 +0.3 5,783,807 - Pf6N2E2_5017 0.34 -0.9 5,783,807 - Pf6N2E2_5017 0.34 -0.1 5,783,807 - Pf6N2E2_5017 0.34 -1.5 5,783,807 - Pf6N2E2_5017 0.34 +0.3 5,783,891 - Pf6N2E2_5017 0.42 -0.2 5,783,906 - Pf6N2E2_5017 0.44 -0.4 5,783,906 - Pf6N2E2_5017 0.44 +1.5
Or see this region's nucleotide sequence