Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4473 and Pf6N2E2_4474 are separated by 81 nucleotides Pf6N2E2_4474 and Pf6N2E2_4475 are separated by 194 nucleotides Pf6N2E2_4475 and Pf6N2E2_4476 are separated by 35 nucleotides Pf6N2E2_4476 and Pf6N2E2_4477 are separated by 324 nucleotides Pf6N2E2_4477 and Pf6N2E2_4478 overlap by 4 nucleotides Pf6N2E2_4478 and Pf6N2E2_4479 are separated by 129 nucleotides
Pf6N2E2_4473 - HlyD family secretion protein, at 5,207,268 to 5,208,233
_4473
Pf6N2E2_4474 - FIG006231: RNA-binding protein, at 5,208,315 to 5,208,764
_4474
Pf6N2E2_4475 - FIG00953390: hypothetical protein, at 5,208,959 to 5,209,105
_4475
Pf6N2E2_4476 - 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2), at 5,209,141 to 5,209,746
_4476
Pf6N2E2_4477 - Z-ring-associated protein ZapA, at 5,210,071 to 5,210,388
_4477
Pf6N2E2_4478 - FIG019278: hypothetical protein, at 5,210,385 to 5,210,594
_4478
Pf6N2E2_4479 - FIG001590: Putative conserved exported protein precursor, at 5,210,724 to 5,211,278
_4479
Position (kb) 5209
5210 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5208.215 kb on + strand at 5208.215 kb on + strand at 5208.215 kb on + strand at 5208.215 kb on + strand at 5208.215 kb on + strand at 5208.215 kb on + strand at 5208.216 kb on - strand at 5208.216 kb on - strand at 5208.252 kb on - strand at 5208.253 kb on + strand at 5208.253 kb on + strand at 5208.253 kb on + strand at 5208.254 kb on - strand at 5208.254 kb on - strand at 5208.353 kb on + strand at 5208.427 kb on + strand, within Pf6N2E2_4474 at 5208.428 kb on - strand, within Pf6N2E2_4474 at 5208.428 kb on - strand, within Pf6N2E2_4474 at 5208.520 kb on + strand, within Pf6N2E2_4474 at 5208.520 kb on + strand, within Pf6N2E2_4474 at 5208.520 kb on + strand, within Pf6N2E2_4474 at 5208.520 kb on + strand, within Pf6N2E2_4474 at 5208.520 kb on + strand, within Pf6N2E2_4474 at 5208.520 kb on + strand, within Pf6N2E2_4474 at 5208.520 kb on + strand, within Pf6N2E2_4474 at 5208.520 kb on + strand, within Pf6N2E2_4474 at 5208.521 kb on - strand, within Pf6N2E2_4474 at 5208.521 kb on - strand, within Pf6N2E2_4474 at 5208.521 kb on - strand, within Pf6N2E2_4474 at 5208.521 kb on - strand, within Pf6N2E2_4474 at 5208.521 kb on - strand, within Pf6N2E2_4474 at 5208.521 kb on - strand, within Pf6N2E2_4474 at 5208.521 kb on - strand, within Pf6N2E2_4474 at 5208.616 kb on + strand, within Pf6N2E2_4474 at 5208.616 kb on + strand, within Pf6N2E2_4474 at 5208.617 kb on - strand, within Pf6N2E2_4474 at 5208.670 kb on + strand, within Pf6N2E2_4474 at 5208.670 kb on + strand, within Pf6N2E2_4474 at 5208.670 kb on + strand, within Pf6N2E2_4474 at 5208.670 kb on + strand, within Pf6N2E2_4474 at 5208.671 kb on - strand, within Pf6N2E2_4474 at 5208.671 kb on - strand, within Pf6N2E2_4474 at 5208.726 kb on + strand at 5208.757 kb on + strand at 5208.758 kb on - strand at 5208.771 kb on + strand at 5208.772 kb on - strand at 5208.810 kb on - strand at 5208.907 kb on + strand at 5208.937 kb on + strand at 5208.938 kb on - strand at 5208.938 kb on - strand at 5208.938 kb on - strand at 5209.153 kb on - strand at 5209.154 kb on + strand at 5209.154 kb on + strand at 5209.154 kb on + strand at 5209.154 kb on + strand at 5209.154 kb on + strand at 5209.154 kb on + strand at 5209.154 kb on + strand at 5209.154 kb on + strand at 5209.155 kb on - strand at 5209.155 kb on - strand at 5209.155 kb on - strand at 5209.155 kb on - strand at 5209.155 kb on - strand at 5209.155 kb on - strand at 5209.189 kb on + strand at 5209.189 kb on + strand at 5209.190 kb on - strand at 5209.190 kb on - strand at 5209.287 kb on - strand, within Pf6N2E2_4476 at 5209.304 kb on + strand, within Pf6N2E2_4476 at 5209.305 kb on - strand, within Pf6N2E2_4476 at 5209.514 kb on + strand, within Pf6N2E2_4476 at 5209.514 kb on + strand, within Pf6N2E2_4476 at 5209.515 kb on - strand, within Pf6N2E2_4476 at 5209.515 kb on - strand, within Pf6N2E2_4476 at 5209.515 kb on - strand, within Pf6N2E2_4476 at 5209.515 kb on - strand, within Pf6N2E2_4476 at 5209.515 kb on - strand, within Pf6N2E2_4476 at 5209.515 kb on - strand, within Pf6N2E2_4476 at 5209.515 kb on - strand, within Pf6N2E2_4476 at 5209.515 kb on - strand, within Pf6N2E2_4476 at 5209.515 kb on - strand, within Pf6N2E2_4476 at 5209.586 kb on + strand, within Pf6N2E2_4476 at 5209.746 kb on + strand at 5209.746 kb on + strand at 5209.746 kb on + strand at 5209.746 kb on + strand at 5209.747 kb on - strand at 5209.780 kb on + strand at 5209.781 kb on - strand at 5210.048 kb on + strand at 5210.048 kb on + strand at 5210.048 kb on + strand at 5210.049 kb on - strand at 5210.049 kb on - strand at 5210.049 kb on - strand at 5210.049 kb on - strand at 5210.051 kb on - strand at 5210.051 kb on - strand at 5210.051 kb on - strand at 5210.051 kb on - strand at 5210.175 kb on + strand, within Pf6N2E2_4477 at 5210.314 kb on - strand, within Pf6N2E2_4477 at 5210.314 kb on - strand, within Pf6N2E2_4477 at 5210.314 kb on - strand, within Pf6N2E2_4477 at 5210.343 kb on - strand, within Pf6N2E2_4477 at 5210.343 kb on - strand, within Pf6N2E2_4477 at 5210.374 kb on - strand at 5210.435 kb on + strand, within Pf6N2E2_4478 at 5210.502 kb on + strand, within Pf6N2E2_4478 at 5210.502 kb on + strand, within Pf6N2E2_4478 at 5210.503 kb on - strand, within Pf6N2E2_4478 at 5210.503 kb on - strand, within Pf6N2E2_4478 at 5210.503 kb on - strand, within Pf6N2E2_4478 at 5210.505 kb on + strand, within Pf6N2E2_4478 at 5210.505 kb on + strand, within Pf6N2E2_4478 at 5210.505 kb on + strand, within Pf6N2E2_4478 at 5210.505 kb on + strand, within Pf6N2E2_4478 at 5210.505 kb on + strand, within Pf6N2E2_4478 at 5210.506 kb on - strand, within Pf6N2E2_4478 at 5210.506 kb on - strand, within Pf6N2E2_4478 at 5210.506 kb on - strand, within Pf6N2E2_4478 at 5210.506 kb on - strand, within Pf6N2E2_4478 at 5210.525 kb on + strand, within Pf6N2E2_4478 at 5210.525 kb on + strand, within Pf6N2E2_4478 at 5210.525 kb on + strand, within Pf6N2E2_4478 at 5210.525 kb on + strand, within Pf6N2E2_4478 at 5210.525 kb on + strand, within Pf6N2E2_4478 at 5210.526 kb on - strand, within Pf6N2E2_4478 at 5210.526 kb on - strand, within Pf6N2E2_4478 at 5210.547 kb on + strand, within Pf6N2E2_4478 at 5210.547 kb on + strand, within Pf6N2E2_4478 at 5210.548 kb on - strand, within Pf6N2E2_4478 at 5210.548 kb on - strand, within Pf6N2E2_4478 at 5210.548 kb on - strand, within Pf6N2E2_4478 at 5210.548 kb on - strand, within Pf6N2E2_4478 at 5210.548 kb on - strand, within Pf6N2E2_4478 at 5210.628 kb on - strand at 5210.628 kb on - strand at 5210.648 kb on + strand at 5210.671 kb on + strand at 5210.672 kb on - strand at 5210.676 kb on + strand at 5210.676 kb on + strand at 5210.692 kb on + strand at 5210.692 kb on + strand at 5210.692 kb on + strand at 5210.692 kb on + strand at 5210.698 kb on + strand at 5210.698 kb on + strand at 5210.698 kb on + strand at 5210.698 kb on + strand at 5210.698 kb on + strand at 5210.698 kb on + strand at 5210.745 kb on + strand at 5210.745 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 5,208,215 + -0.0 5,208,215 + +0.2 5,208,215 + +0.6 5,208,215 + +1.2 5,208,215 + -1.2 5,208,215 + +0.7 5,208,216 - -0.0 5,208,216 - -0.2 5,208,252 - +1.6 5,208,253 + +1.0 5,208,253 + +0.5 5,208,253 + +0.1 5,208,254 - +1.5 5,208,254 - +0.0 5,208,353 + +0.5 5,208,427 + Pf6N2E2_4474 0.25 +0.2 5,208,428 - Pf6N2E2_4474 0.25 +0.2 5,208,428 - Pf6N2E2_4474 0.25 +0.7 5,208,520 + Pf6N2E2_4474 0.46 -0.0 5,208,520 + Pf6N2E2_4474 0.46 +0.6 5,208,520 + Pf6N2E2_4474 0.46 -0.6 5,208,520 + Pf6N2E2_4474 0.46 -0.7 5,208,520 + Pf6N2E2_4474 0.46 +0.1 5,208,520 + Pf6N2E2_4474 0.46 +0.7 5,208,520 + Pf6N2E2_4474 0.46 -1.1 5,208,520 + Pf6N2E2_4474 0.46 -0.8 5,208,521 - Pf6N2E2_4474 0.46 +1.0 5,208,521 - Pf6N2E2_4474 0.46 -0.4 5,208,521 - Pf6N2E2_4474 0.46 +0.3 5,208,521 - Pf6N2E2_4474 0.46 +1.2 5,208,521 - Pf6N2E2_4474 0.46 -0.9 5,208,521 - Pf6N2E2_4474 0.46 +0.1 5,208,521 - Pf6N2E2_4474 0.46 +0.5 5,208,616 + Pf6N2E2_4474 0.67 +0.2 5,208,616 + Pf6N2E2_4474 0.67 -1.7 5,208,617 - Pf6N2E2_4474 0.67 +0.8 5,208,670 + Pf6N2E2_4474 0.79 -0.1 5,208,670 + Pf6N2E2_4474 0.79 +0.1 5,208,670 + Pf6N2E2_4474 0.79 +0.6 5,208,670 + Pf6N2E2_4474 0.79 -1.2 5,208,671 - Pf6N2E2_4474 0.79 +1.6 5,208,671 - Pf6N2E2_4474 0.79 +0.6 5,208,726 + +1.2 5,208,757 + +1.0 5,208,758 - +0.4 5,208,771 + -0.3 5,208,772 - +0.6 5,208,810 - +0.9 5,208,907 + +0.3 5,208,937 + -1.1 5,208,938 - +0.3 5,208,938 - +1.1 5,208,938 - -0.6 5,209,153 - +0.3 5,209,154 + -0.7 5,209,154 + -0.5 5,209,154 + +0.5 5,209,154 + -2.9 5,209,154 + -0.7 5,209,154 + -1.4 5,209,154 + -1.1 5,209,154 + +0.4 5,209,155 - -0.6 5,209,155 - -2.5 5,209,155 - -1.7 5,209,155 - -1.1 5,209,155 - -0.3 5,209,155 - +0.6 5,209,189 + -2.6 5,209,189 + +0.6 5,209,190 - -0.4 5,209,190 - -0.6 5,209,287 - Pf6N2E2_4476 0.24 -2.2 5,209,304 + Pf6N2E2_4476 0.27 -0.4 5,209,305 - Pf6N2E2_4476 0.27 -1.6 5,209,514 + Pf6N2E2_4476 0.62 -0.7 5,209,514 + Pf6N2E2_4476 0.62 -2.1 5,209,515 - Pf6N2E2_4476 0.62 -3.6 5,209,515 - Pf6N2E2_4476 0.62 -0.9 5,209,515 - Pf6N2E2_4476 0.62 +0.0 5,209,515 - Pf6N2E2_4476 0.62 +0.4 5,209,515 - Pf6N2E2_4476 0.62 -1.4 5,209,515 - Pf6N2E2_4476 0.62 -1.2 5,209,515 - Pf6N2E2_4476 0.62 -0.2 5,209,515 - Pf6N2E2_4476 0.62 -3.4 5,209,515 - Pf6N2E2_4476 0.62 +0.0 5,209,586 + Pf6N2E2_4476 0.73 +0.6 5,209,746 + +1.6 5,209,746 + -1.2 5,209,746 + -0.7 5,209,746 + +0.6 5,209,747 - -2.2 5,209,780 + +0.4 5,209,781 - -0.8 5,210,048 + +0.0 5,210,048 + -0.8 5,210,048 + -1.8 5,210,049 - +0.2 5,210,049 - -0.3 5,210,049 - -1.0 5,210,049 - +0.1 5,210,051 - +1.6 5,210,051 - +1.1 5,210,051 - -1.2 5,210,051 - +1.0 5,210,175 + Pf6N2E2_4477 0.33 -2.2 5,210,314 - Pf6N2E2_4477 0.76 -0.3 5,210,314 - Pf6N2E2_4477 0.76 +0.0 5,210,314 - Pf6N2E2_4477 0.76 -0.4 5,210,343 - Pf6N2E2_4477 0.86 -1.8 5,210,343 - Pf6N2E2_4477 0.86 -0.7 5,210,374 - -1.4 5,210,435 + Pf6N2E2_4478 0.24 -0.4 5,210,502 + Pf6N2E2_4478 0.56 -1.2 5,210,502 + Pf6N2E2_4478 0.56 +0.2 5,210,503 - Pf6N2E2_4478 0.56 -1.2 5,210,503 - Pf6N2E2_4478 0.56 -2.4 5,210,503 - Pf6N2E2_4478 0.56 +0.9 5,210,505 + Pf6N2E2_4478 0.57 +0.3 5,210,505 + Pf6N2E2_4478 0.57 -1.6 5,210,505 + Pf6N2E2_4478 0.57 -2.4 5,210,505 + Pf6N2E2_4478 0.57 +0.0 5,210,505 + Pf6N2E2_4478 0.57 -1.2 5,210,506 - Pf6N2E2_4478 0.58 -1.4 5,210,506 - Pf6N2E2_4478 0.58 +0.3 5,210,506 - Pf6N2E2_4478 0.58 +1.0 5,210,506 - Pf6N2E2_4478 0.58 -2.2 5,210,525 + Pf6N2E2_4478 0.67 -0.7 5,210,525 + Pf6N2E2_4478 0.67 +1.6 5,210,525 + Pf6N2E2_4478 0.67 +1.3 5,210,525 + Pf6N2E2_4478 0.67 -0.9 5,210,525 + Pf6N2E2_4478 0.67 -0.4 5,210,526 - Pf6N2E2_4478 0.67 -0.4 5,210,526 - Pf6N2E2_4478 0.67 +2.6 5,210,547 + Pf6N2E2_4478 0.77 -0.7 5,210,547 + Pf6N2E2_4478 0.77 -1.0 5,210,548 - Pf6N2E2_4478 0.78 -0.2 5,210,548 - Pf6N2E2_4478 0.78 -1.1 5,210,548 - Pf6N2E2_4478 0.78 +0.3 5,210,548 - Pf6N2E2_4478 0.78 +0.0 5,210,548 - Pf6N2E2_4478 0.78 -0.3 5,210,628 - -0.1 5,210,628 - +0.9 5,210,648 + -0.6 5,210,671 + +1.5 5,210,672 - +1.6 5,210,676 + +0.0 5,210,676 + +0.0 5,210,692 + -0.3 5,210,692 + +0.0 5,210,692 + +0.0 5,210,692 + -0.9 5,210,698 + +1.4 5,210,698 + -1.2 5,210,698 + +2.3 5,210,698 + +1.6 5,210,698 + +0.6 5,210,698 + +0.6 5,210,745 + +0.5 5,210,745 + -0.3
Or see this region's nucleotide sequence