Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3846 and Pf6N2E2_3847 overlap by 4 nucleotides Pf6N2E2_3847 and Pf6N2E2_6127 are separated by 102 nucleotides Pf6N2E2_6127 and Pf6N2E2_3848 are separated by 119 nucleotides Pf6N2E2_3848 and Pf6N2E2_3849 are separated by 61 nucleotides Pf6N2E2_3849 and Pf6N2E2_3850 are separated by 223 nucleotides
Pf6N2E2_3846 - A/G-specific adenine glycosylase (EC 3.2.2.-), at 4,479,537 to 4,480,604
_3846
Pf6N2E2_3847 - FIG001341: Probable Fe(2+)-trafficking protein YggX, at 4,480,601 to 4,480,873
_3847
Pf6N2E2_6127 - tRNA-Phe-GAA, at 4,480,976 to 4,481,048
_6127
Pf6N2E2_3848 - hypothetical protein, at 4,481,168 to 4,481,497
_3848
Pf6N2E2_3849 - FIG00954739: hypothetical protein, at 4,481,559 to 4,481,966
_3849
Pf6N2E2_3850 - FIG074102: hypothetical protein, at 4,482,190 to 4,483,239
_3850
Position (kb)
4481
4482 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4480.688 kb on - strand, within Pf6N2E2_3847 at 4480.688 kb on - strand, within Pf6N2E2_3847 at 4480.691 kb on + strand, within Pf6N2E2_3847 at 4480.691 kb on + strand, within Pf6N2E2_3847 at 4480.692 kb on - strand, within Pf6N2E2_3847 at 4480.692 kb on - strand, within Pf6N2E2_3847 at 4480.692 kb on - strand, within Pf6N2E2_3847 at 4480.692 kb on - strand, within Pf6N2E2_3847 at 4480.692 kb on - strand, within Pf6N2E2_3847 at 4480.794 kb on - strand, within Pf6N2E2_3847 at 4480.835 kb on + strand, within Pf6N2E2_3847 at 4480.853 kb on + strand at 4480.857 kb on + strand at 4480.858 kb on - strand at 4480.871 kb on + strand at 4480.898 kb on + strand at 4480.919 kb on + strand at 4481.093 kb on - strand at 4481.132 kb on + strand at 4481.133 kb on - strand at 4481.221 kb on + strand, within Pf6N2E2_3848 at 4481.222 kb on - strand, within Pf6N2E2_3848 at 4481.222 kb on - strand, within Pf6N2E2_3848 at 4481.252 kb on + strand, within Pf6N2E2_3848 at 4481.300 kb on + strand, within Pf6N2E2_3848 at 4481.300 kb on + strand, within Pf6N2E2_3848 at 4481.300 kb on + strand, within Pf6N2E2_3848 at 4481.301 kb on - strand, within Pf6N2E2_3848 at 4481.302 kb on + strand, within Pf6N2E2_3848 at 4481.302 kb on + strand, within Pf6N2E2_3848 at 4481.302 kb on + strand, within Pf6N2E2_3848 at 4481.303 kb on - strand, within Pf6N2E2_3848 at 4481.303 kb on - strand, within Pf6N2E2_3848 at 4481.303 kb on - strand, within Pf6N2E2_3848 at 4481.303 kb on - strand, within Pf6N2E2_3848 at 4481.375 kb on - strand, within Pf6N2E2_3848 at 4481.423 kb on + strand, within Pf6N2E2_3848 at 4481.424 kb on - strand, within Pf6N2E2_3848 at 4481.430 kb on + strand, within Pf6N2E2_3848 at 4481.430 kb on + strand, within Pf6N2E2_3848 at 4481.430 kb on + strand, within Pf6N2E2_3848 at 4481.431 kb on - strand, within Pf6N2E2_3848 at 4481.431 kb on - strand, within Pf6N2E2_3848 at 4481.431 kb on - strand, within Pf6N2E2_3848 at 4481.487 kb on + strand at 4481.487 kb on + strand at 4481.488 kb on - strand at 4481.524 kb on + strand at 4481.524 kb on + strand at 4481.524 kb on + strand at 4481.525 kb on - strand at 4481.529 kb on + strand at 4481.529 kb on + strand at 4481.529 kb on + strand at 4481.529 kb on + strand at 4481.530 kb on - strand at 4481.530 kb on - strand at 4481.530 kb on - strand at 4481.530 kb on - strand at 4481.539 kb on + strand at 4481.834 kb on + strand, within Pf6N2E2_3849 at 4481.925 kb on + strand, within Pf6N2E2_3849 at 4481.925 kb on + strand, within Pf6N2E2_3849 at 4481.926 kb on - strand at 4482.036 kb on + strand at 4482.036 kb on + strand at 4482.036 kb on + strand at 4482.058 kb on + strand at 4482.058 kb on + strand at 4482.058 kb on + strand at 4482.059 kb on - strand at 4482.059 kb on - strand at 4482.096 kb on + strand at 4482.097 kb on - strand at 4482.333 kb on + strand, within Pf6N2E2_3850 at 4482.333 kb on + strand, within Pf6N2E2_3850 at 4482.333 kb on + strand, within Pf6N2E2_3850 at 4482.333 kb on + strand, within Pf6N2E2_3850 at 4482.333 kb on + strand, within Pf6N2E2_3850 at 4482.333 kb on + strand, within Pf6N2E2_3850 at 4482.333 kb on + strand, within Pf6N2E2_3850 at 4482.333 kb on + strand, within Pf6N2E2_3850 at 4482.333 kb on + strand, within Pf6N2E2_3850 at 4482.333 kb on + strand, within Pf6N2E2_3850 at 4482.333 kb on + strand, within Pf6N2E2_3850 at 4482.334 kb on - strand, within Pf6N2E2_3850 at 4482.334 kb on - strand, within Pf6N2E2_3850 at 4482.334 kb on - strand, within Pf6N2E2_3850 at 4482.334 kb on - strand, within Pf6N2E2_3850 at 4482.334 kb on - strand, within Pf6N2E2_3850 at 4482.334 kb on - strand, within Pf6N2E2_3850 at 4482.334 kb on - strand, within Pf6N2E2_3850 at 4482.334 kb on - strand, within Pf6N2E2_3850 at 4482.334 kb on - strand, within Pf6N2E2_3850 at 4482.373 kb on + strand, within Pf6N2E2_3850 at 4482.469 kb on + strand, within Pf6N2E2_3850 at 4482.469 kb on + strand, within Pf6N2E2_3850 at 4482.470 kb on - strand, within Pf6N2E2_3850 at 4482.568 kb on + strand, within Pf6N2E2_3850 at 4482.568 kb on + strand, within Pf6N2E2_3850 at 4482.568 kb on + strand, within Pf6N2E2_3850 at 4482.568 kb on + strand, within Pf6N2E2_3850 at 4482.568 kb on + strand, within Pf6N2E2_3850 at 4482.568 kb on + strand, within Pf6N2E2_3850 at 4482.568 kb on + strand, within Pf6N2E2_3850 at 4482.568 kb on + strand, within Pf6N2E2_3850 at 4482.568 kb on + strand, within Pf6N2E2_3850 at 4482.569 kb on - strand, within Pf6N2E2_3850 at 4482.569 kb on - strand, within Pf6N2E2_3850 at 4482.569 kb on - strand, within Pf6N2E2_3850 at 4482.569 kb on - strand, within Pf6N2E2_3850 at 4482.569 kb on - strand, within Pf6N2E2_3850 at 4482.569 kb on - strand, within Pf6N2E2_3850 at 4482.569 kb on - strand, within Pf6N2E2_3850 at 4482.634 kb on + strand, within Pf6N2E2_3850 at 4482.634 kb on + strand, within Pf6N2E2_3850 at 4482.634 kb on + strand, within Pf6N2E2_3850 at 4482.634 kb on + strand, within Pf6N2E2_3850 at 4482.634 kb on + strand, within Pf6N2E2_3850 at 4482.635 kb on - strand, within Pf6N2E2_3850 at 4482.635 kb on - strand, within Pf6N2E2_3850 at 4482.635 kb on - strand, within Pf6N2E2_3850 at 4482.637 kb on + strand, within Pf6N2E2_3850 at 4482.637 kb on + strand, within Pf6N2E2_3850 at 4482.638 kb on - strand, within Pf6N2E2_3850 at 4482.821 kb on + strand, within Pf6N2E2_3850 at 4482.821 kb on + strand, within Pf6N2E2_3850 at 4482.822 kb on - strand, within Pf6N2E2_3850 at 4482.922 kb on + strand, within Pf6N2E2_3850 at 4482.922 kb on + strand, within Pf6N2E2_3850 at 4482.922 kb on + strand, within Pf6N2E2_3850 at 4482.922 kb on + strand, within Pf6N2E2_3850 at 4482.922 kb on + strand, within Pf6N2E2_3850 at 4482.923 kb on - strand, within Pf6N2E2_3850 at 4482.923 kb on - strand, within Pf6N2E2_3850 at 4482.928 kb on + strand, within Pf6N2E2_3850 at 4482.928 kb on + strand, within Pf6N2E2_3850 at 4482.928 kb on + strand, within Pf6N2E2_3850 at 4482.928 kb on + strand, within Pf6N2E2_3850 at 4482.928 kb on + strand, within Pf6N2E2_3850 at 4482.928 kb on + strand, within Pf6N2E2_3850 at 4482.928 kb on + strand, within Pf6N2E2_3850 at 4482.928 kb on + strand, within Pf6N2E2_3850 at 4482.929 kb on - strand, within Pf6N2E2_3850 at 4482.929 kb on - strand, within Pf6N2E2_3850 at 4482.929 kb on - strand at 4482.947 kb on + strand, within Pf6N2E2_3850
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 4,480,688 - Pf6N2E2_3847 0.32 +1.6 4,480,688 - Pf6N2E2_3847 0.32 -0.1 4,480,691 + Pf6N2E2_3847 0.33 -0.4 4,480,691 + Pf6N2E2_3847 0.33 +0.6 4,480,692 - Pf6N2E2_3847 0.33 +0.6 4,480,692 - Pf6N2E2_3847 0.33 +1.5 4,480,692 - Pf6N2E2_3847 0.33 +0.6 4,480,692 - Pf6N2E2_3847 0.33 +1.1 4,480,692 - Pf6N2E2_3847 0.33 -0.7 4,480,794 - Pf6N2E2_3847 0.71 +0.6 4,480,835 + Pf6N2E2_3847 0.86 -0.7 4,480,853 + +1.1 4,480,857 + +0.8 4,480,858 - +0.3 4,480,871 + -1.0 4,480,898 + +0.4 4,480,919 + +0.4 4,481,093 - -1.2 4,481,132 + +0.6 4,481,133 - +0.4 4,481,221 + Pf6N2E2_3848 0.16 -0.0 4,481,222 - Pf6N2E2_3848 0.16 -1.1 4,481,222 - Pf6N2E2_3848 0.16 -0.9 4,481,252 + Pf6N2E2_3848 0.25 +0.6 4,481,300 + Pf6N2E2_3848 0.40 +0.6 4,481,300 + Pf6N2E2_3848 0.40 -0.0 4,481,300 + Pf6N2E2_3848 0.40 +0.3 4,481,301 - Pf6N2E2_3848 0.40 +1.2 4,481,302 + Pf6N2E2_3848 0.41 +0.5 4,481,302 + Pf6N2E2_3848 0.41 -0.4 4,481,302 + Pf6N2E2_3848 0.41 -2.2 4,481,303 - Pf6N2E2_3848 0.41 +1.6 4,481,303 - Pf6N2E2_3848 0.41 +0.7 4,481,303 - Pf6N2E2_3848 0.41 +0.6 4,481,303 - Pf6N2E2_3848 0.41 +1.1 4,481,375 - Pf6N2E2_3848 0.63 -0.1 4,481,423 + Pf6N2E2_3848 0.77 +0.6 4,481,424 - Pf6N2E2_3848 0.78 -0.3 4,481,430 + Pf6N2E2_3848 0.79 +0.6 4,481,430 + Pf6N2E2_3848 0.79 +1.6 4,481,430 + Pf6N2E2_3848 0.79 -0.0 4,481,431 - Pf6N2E2_3848 0.80 -0.3 4,481,431 - Pf6N2E2_3848 0.80 +1.0 4,481,431 - Pf6N2E2_3848 0.80 +0.6 4,481,487 + +0.4 4,481,487 + -0.2 4,481,488 - -0.4 4,481,524 + +0.3 4,481,524 + +0.1 4,481,524 + +2.0 4,481,525 - -0.4 4,481,529 + +1.0 4,481,529 + +0.9 4,481,529 + -2.6 4,481,529 + +0.3 4,481,530 - +0.6 4,481,530 - +0.4 4,481,530 - +1.7 4,481,530 - -0.2 4,481,539 + +0.5 4,481,834 + Pf6N2E2_3849 0.67 +1.6 4,481,925 + Pf6N2E2_3849 0.90 -1.9 4,481,925 + Pf6N2E2_3849 0.90 -0.7 4,481,926 - +0.7 4,482,036 + -0.9 4,482,036 + +1.0 4,482,036 + -0.1 4,482,058 + -2.2 4,482,058 + -0.1 4,482,058 + +1.0 4,482,059 - -0.3 4,482,059 - +0.6 4,482,096 + +1.3 4,482,097 - +0.6 4,482,333 + Pf6N2E2_3850 0.14 -1.2 4,482,333 + Pf6N2E2_3850 0.14 -1.0 4,482,333 + Pf6N2E2_3850 0.14 +0.3 4,482,333 + Pf6N2E2_3850 0.14 -2.7 4,482,333 + Pf6N2E2_3850 0.14 +0.6 4,482,333 + Pf6N2E2_3850 0.14 -0.3 4,482,333 + Pf6N2E2_3850 0.14 +0.6 4,482,333 + Pf6N2E2_3850 0.14 -0.0 4,482,333 + Pf6N2E2_3850 0.14 -0.3 4,482,333 + Pf6N2E2_3850 0.14 +0.6 4,482,333 + Pf6N2E2_3850 0.14 +0.2 4,482,334 - Pf6N2E2_3850 0.14 +0.4 4,482,334 - Pf6N2E2_3850 0.14 +0.1 4,482,334 - Pf6N2E2_3850 0.14 -1.3 4,482,334 - Pf6N2E2_3850 0.14 -1.3 4,482,334 - Pf6N2E2_3850 0.14 +0.6 4,482,334 - Pf6N2E2_3850 0.14 +1.6 4,482,334 - Pf6N2E2_3850 0.14 +0.6 4,482,334 - Pf6N2E2_3850 0.14 -0.0 4,482,334 - Pf6N2E2_3850 0.14 +1.6 4,482,373 + Pf6N2E2_3850 0.17 -0.1 4,482,469 + Pf6N2E2_3850 0.27 +1.2 4,482,469 + Pf6N2E2_3850 0.27 +1.1 4,482,470 - Pf6N2E2_3850 0.27 -0.9 4,482,568 + Pf6N2E2_3850 0.36 +0.8 4,482,568 + Pf6N2E2_3850 0.36 -0.3 4,482,568 + Pf6N2E2_3850 0.36 -0.7 4,482,568 + Pf6N2E2_3850 0.36 -0.0 4,482,568 + Pf6N2E2_3850 0.36 +0.3 4,482,568 + Pf6N2E2_3850 0.36 +1.1 4,482,568 + Pf6N2E2_3850 0.36 +1.2 4,482,568 + Pf6N2E2_3850 0.36 +2.3 4,482,568 + Pf6N2E2_3850 0.36 -0.4 4,482,569 - Pf6N2E2_3850 0.36 -2.7 4,482,569 - Pf6N2E2_3850 0.36 +0.6 4,482,569 - Pf6N2E2_3850 0.36 +1.1 4,482,569 - Pf6N2E2_3850 0.36 -0.9 4,482,569 - Pf6N2E2_3850 0.36 -0.5 4,482,569 - Pf6N2E2_3850 0.36 +1.6 4,482,569 - Pf6N2E2_3850 0.36 -0.0 4,482,634 + Pf6N2E2_3850 0.42 -1.1 4,482,634 + Pf6N2E2_3850 0.42 -0.2 4,482,634 + Pf6N2E2_3850 0.42 -0.0 4,482,634 + Pf6N2E2_3850 0.42 -0.6 4,482,634 + Pf6N2E2_3850 0.42 -0.6 4,482,635 - Pf6N2E2_3850 0.42 +1.2 4,482,635 - Pf6N2E2_3850 0.42 +1.4 4,482,635 - Pf6N2E2_3850 0.42 -1.0 4,482,637 + Pf6N2E2_3850 0.43 +0.4 4,482,637 + Pf6N2E2_3850 0.43 -1.2 4,482,638 - Pf6N2E2_3850 0.43 -0.2 4,482,821 + Pf6N2E2_3850 0.60 +0.4 4,482,821 + Pf6N2E2_3850 0.60 -1.0 4,482,822 - Pf6N2E2_3850 0.60 +0.1 4,482,922 + Pf6N2E2_3850 0.70 -0.1 4,482,922 + Pf6N2E2_3850 0.70 -0.2 4,482,922 + Pf6N2E2_3850 0.70 +0.9 4,482,922 + Pf6N2E2_3850 0.70 +0.0 4,482,922 + Pf6N2E2_3850 0.70 +0.5 4,482,923 - Pf6N2E2_3850 0.70 -2.3 4,482,923 - Pf6N2E2_3850 0.70 +0.5 4,482,928 + Pf6N2E2_3850 0.70 +0.0 4,482,928 + Pf6N2E2_3850 0.70 -0.5 4,482,928 + Pf6N2E2_3850 0.70 -0.1 4,482,928 + Pf6N2E2_3850 0.70 -0.8 4,482,928 + Pf6N2E2_3850 0.70 +0.6 4,482,928 + Pf6N2E2_3850 0.70 -0.4 4,482,928 + Pf6N2E2_3850 0.70 -0.5 4,482,928 + Pf6N2E2_3850 0.70 +0.2 4,482,929 - Pf6N2E2_3850 0.70 +0.6 4,482,929 - Pf6N2E2_3850 0.70 +0.3 4,482,929 - +1.6 4,482,947 + Pf6N2E2_3850 0.72 -1.1
Or see this region's nucleotide sequence