Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3692 and Pf6N2E2_3693 are separated by 235 nucleotides Pf6N2E2_3693 and Pf6N2E2_3694 are separated by 286 nucleotides Pf6N2E2_3694 and Pf6N2E2_3695 are separated by 286 nucleotides
Pf6N2E2_3692 - Selenoprotein O and cysteine-containing homologs, at 4,309,190 to 4,310,653
_3692
Pf6N2E2_3693 - Helix-turn-helix motif, at 4,310,889 to 4,311,026
_3693
Pf6N2E2_3694 - Helix-turn-helix motif, at 4,311,313 to 4,311,450
_3694
Pf6N2E2_3695 - Helix-turn-helix motif, at 4,311,737 to 4,312,138
_3695
Position (kb) 4310
4311
4312 Strain fitness (log2 ratio) -1
0
1
2
3 at 4310.156 kb on + strand, within Pf6N2E2_3692 at 4310.156 kb on + strand, within Pf6N2E2_3692 at 4310.156 kb on + strand, within Pf6N2E2_3692 at 4310.157 kb on - strand, within Pf6N2E2_3692 at 4310.157 kb on - strand, within Pf6N2E2_3692 at 4310.181 kb on - strand, within Pf6N2E2_3692 at 4310.285 kb on + strand, within Pf6N2E2_3692 at 4310.393 kb on + strand, within Pf6N2E2_3692 at 4310.393 kb on + strand, within Pf6N2E2_3692 at 4310.393 kb on + strand, within Pf6N2E2_3692 at 4310.393 kb on + strand, within Pf6N2E2_3692 at 4310.393 kb on + strand, within Pf6N2E2_3692 at 4310.393 kb on + strand, within Pf6N2E2_3692 at 4310.393 kb on + strand, within Pf6N2E2_3692 at 4310.393 kb on + strand, within Pf6N2E2_3692 at 4310.393 kb on + strand, within Pf6N2E2_3692 at 4310.394 kb on - strand, within Pf6N2E2_3692 at 4310.394 kb on - strand, within Pf6N2E2_3692 at 4310.394 kb on - strand, within Pf6N2E2_3692 at 4310.394 kb on - strand, within Pf6N2E2_3692 at 4310.394 kb on - strand, within Pf6N2E2_3692 at 4310.394 kb on - strand, within Pf6N2E2_3692 at 4310.394 kb on - strand, within Pf6N2E2_3692 at 4310.394 kb on - strand, within Pf6N2E2_3692 at 4310.394 kb on - strand, within Pf6N2E2_3692 at 4310.394 kb on - strand, within Pf6N2E2_3692 at 4310.394 kb on - strand, within Pf6N2E2_3692 at 4310.394 kb on - strand, within Pf6N2E2_3692 at 4310.394 kb on - strand, within Pf6N2E2_3692 at 4310.471 kb on + strand, within Pf6N2E2_3692 at 4310.471 kb on + strand, within Pf6N2E2_3692 at 4310.471 kb on + strand, within Pf6N2E2_3692 at 4310.472 kb on - strand, within Pf6N2E2_3692 at 4310.478 kb on + strand, within Pf6N2E2_3692 at 4310.486 kb on + strand, within Pf6N2E2_3692 at 4310.486 kb on + strand, within Pf6N2E2_3692 at 4310.486 kb on + strand, within Pf6N2E2_3692 at 4310.487 kb on - strand, within Pf6N2E2_3692 at 4310.487 kb on - strand, within Pf6N2E2_3692 at 4310.597 kb on + strand at 4310.651 kb on + strand at 4310.694 kb on - strand at 4310.694 kb on - strand at 4310.694 kb on - strand at 4310.694 kb on - strand at 4311.726 kb on - strand at 4311.821 kb on + strand, within Pf6N2E2_3695
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 4,310,156 + Pf6N2E2_3692 0.66 +0.1 4,310,156 + Pf6N2E2_3692 0.66 +0.7 4,310,156 + Pf6N2E2_3692 0.66 +2.1 4,310,157 - Pf6N2E2_3692 0.66 -1.7 4,310,157 - Pf6N2E2_3692 0.66 +0.3 4,310,181 - Pf6N2E2_3692 0.68 +1.2 4,310,285 + Pf6N2E2_3692 0.75 +0.7 4,310,393 + Pf6N2E2_3692 0.82 -1.5 4,310,393 + Pf6N2E2_3692 0.82 -0.1 4,310,393 + Pf6N2E2_3692 0.82 +2.1 4,310,393 + Pf6N2E2_3692 0.82 +1.5 4,310,393 + Pf6N2E2_3692 0.82 -0.7 4,310,393 + Pf6N2E2_3692 0.82 -0.0 4,310,393 + Pf6N2E2_3692 0.82 +0.2 4,310,393 + Pf6N2E2_3692 0.82 +0.3 4,310,393 + Pf6N2E2_3692 0.82 +0.5 4,310,394 - Pf6N2E2_3692 0.82 +1.3 4,310,394 - Pf6N2E2_3692 0.82 +0.0 4,310,394 - Pf6N2E2_3692 0.82 -0.5 4,310,394 - Pf6N2E2_3692 0.82 -0.2 4,310,394 - Pf6N2E2_3692 0.82 +0.3 4,310,394 - Pf6N2E2_3692 0.82 -0.2 4,310,394 - Pf6N2E2_3692 0.82 +2.8 4,310,394 - Pf6N2E2_3692 0.82 +0.9 4,310,394 - Pf6N2E2_3692 0.82 +0.5 4,310,394 - Pf6N2E2_3692 0.82 -0.0 4,310,394 - Pf6N2E2_3692 0.82 +0.4 4,310,394 - Pf6N2E2_3692 0.82 +0.1 4,310,394 - Pf6N2E2_3692 0.82 -0.5 4,310,471 + Pf6N2E2_3692 0.88 -1.4 4,310,471 + Pf6N2E2_3692 0.88 -0.0 4,310,471 + Pf6N2E2_3692 0.88 +0.1 4,310,472 - Pf6N2E2_3692 0.88 +0.4 4,310,478 + Pf6N2E2_3692 0.88 -0.0 4,310,486 + Pf6N2E2_3692 0.89 +0.5 4,310,486 + Pf6N2E2_3692 0.89 +0.1 4,310,486 + Pf6N2E2_3692 0.89 -0.6 4,310,487 - Pf6N2E2_3692 0.89 +0.2 4,310,487 - Pf6N2E2_3692 0.89 -0.5 4,310,597 + +1.5 4,310,651 + +0.5 4,310,694 - +0.1 4,310,694 - -0.7 4,310,694 - +0.8 4,310,694 - +1.8 4,311,726 - -0.4 4,311,821 + Pf6N2E2_3695 0.21 +1.5
Or see this region's nucleotide sequence