Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3121

Experiment: RCH2_defined

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3119 and Pf6N2E2_3120 overlap by 4 nucleotidesPf6N2E2_3120 and Pf6N2E2_3121 overlap by 4 nucleotidesPf6N2E2_3121 and Pf6N2E2_3122 overlap by 4 nucleotidesPf6N2E2_3122 and Pf6N2E2_3123 overlap by 1 nucleotides Pf6N2E2_3119 - Sensor histidine kinase/response regulator, at 3,608,083 to 3,610,347 _3119 Pf6N2E2_3120 - Chemotaxis signal transduction protein, at 3,610,344 to 3,611,015 _3120 Pf6N2E2_3121 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 3,611,012 to 3,612,277 _3121 Pf6N2E2_3122 - Chemotaxis signal transduction protein, at 3,612,274 to 3,612,810 _3122 Pf6N2E2_3123 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 3,612,810 to 3,614,432 _3123 Position (kb) 3611 3612 3613Strain fitness (log2 ratio) -1 0 1 2at 3610.056 kb on + strand, within Pf6N2E2_3119at 3610.056 kb on + strand, within Pf6N2E2_3119at 3610.056 kb on + strand, within Pf6N2E2_3119at 3610.435 kb on + strand, within Pf6N2E2_3120at 3610.435 kb on + strand, within Pf6N2E2_3120at 3610.436 kb on - strand, within Pf6N2E2_3120at 3610.644 kb on + strand, within Pf6N2E2_3120at 3610.877 kb on - strand, within Pf6N2E2_3120at 3610.901 kb on + strand, within Pf6N2E2_3120at 3610.901 kb on + strand, within Pf6N2E2_3120at 3610.996 kb on + strandat 3610.996 kb on + strandat 3610.996 kb on + strandat 3610.996 kb on + strandat 3610.996 kb on + strandat 3610.996 kb on + strandat 3610.997 kb on - strandat 3610.997 kb on - strandat 3610.997 kb on - strandat 3610.997 kb on - strandat 3610.997 kb on - strandat 3610.997 kb on - strandat 3610.997 kb on - strandat 3611.151 kb on + strand, within Pf6N2E2_3121at 3611.152 kb on - strand, within Pf6N2E2_3121at 3611.223 kb on + strand, within Pf6N2E2_3121at 3611.223 kb on + strand, within Pf6N2E2_3121at 3611.223 kb on + strand, within Pf6N2E2_3121at 3611.223 kb on + strand, within Pf6N2E2_3121at 3611.223 kb on + strand, within Pf6N2E2_3121at 3611.259 kb on + strand, within Pf6N2E2_3121at 3611.260 kb on - strand, within Pf6N2E2_3121at 3611.317 kb on + strand, within Pf6N2E2_3121at 3611.570 kb on - strand, within Pf6N2E2_3121at 3611.787 kb on + strand, within Pf6N2E2_3121at 3611.787 kb on + strand, within Pf6N2E2_3121at 3611.787 kb on + strand, within Pf6N2E2_3121at 3611.944 kb on - strand, within Pf6N2E2_3121at 3612.141 kb on + strand, within Pf6N2E2_3121at 3612.141 kb on + strand, within Pf6N2E2_3121at 3612.142 kb on - strand, within Pf6N2E2_3121at 3612.411 kb on - strand, within Pf6N2E2_3122at 3612.411 kb on - strand, within Pf6N2E2_3122at 3612.438 kb on - strand, within Pf6N2E2_3122at 3613.162 kb on + strand, within Pf6N2E2_3123at 3613.162 kb on + strand, within Pf6N2E2_3123at 3613.162 kb on + strand, within Pf6N2E2_3123at 3613.162 kb on + strand, within Pf6N2E2_3123at 3613.163 kb on - strand, within Pf6N2E2_3123at 3613.163 kb on - strand, within Pf6N2E2_3123at 3613.163 kb on - strand, within Pf6N2E2_3123at 3613.163 kb on - strand, within Pf6N2E2_3123at 3613.163 kb on - strand, within Pf6N2E2_3123at 3613.197 kb on + strand, within Pf6N2E2_3123at 3613.197 kb on + strand, within Pf6N2E2_3123at 3613.198 kb on - strand, within Pf6N2E2_3123at 3613.198 kb on - strand, within Pf6N2E2_3123at 3613.198 kb on - strand, within Pf6N2E2_3123at 3613.232 kb on - strand, within Pf6N2E2_3123

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined
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3,610,056 + Pf6N2E2_3119 0.87 +0.3
3,610,056 + Pf6N2E2_3119 0.87 +0.7
3,610,056 + Pf6N2E2_3119 0.87 +0.7
3,610,435 + Pf6N2E2_3120 0.14 +0.3
3,610,435 + Pf6N2E2_3120 0.14 +1.3
3,610,436 - Pf6N2E2_3120 0.14 -0.2
3,610,644 + Pf6N2E2_3120 0.45 +0.8
3,610,877 - Pf6N2E2_3120 0.79 +0.3
3,610,901 + Pf6N2E2_3120 0.83 +0.5
3,610,901 + Pf6N2E2_3120 0.83 +1.0
3,610,996 + +0.2
3,610,996 + -1.3
3,610,996 + +1.2
3,610,996 + +0.7
3,610,996 + +0.7
3,610,996 + -1.6
3,610,997 - -0.3
3,610,997 - +0.9
3,610,997 - -1.1
3,610,997 - +0.7
3,610,997 - +0.2
3,610,997 - +0.6
3,610,997 - +0.5
3,611,151 + Pf6N2E2_3121 0.11 -0.2
3,611,152 - Pf6N2E2_3121 0.11 +1.2
3,611,223 + Pf6N2E2_3121 0.17 +0.4
3,611,223 + Pf6N2E2_3121 0.17 +0.7
3,611,223 + Pf6N2E2_3121 0.17 +2.2
3,611,223 + Pf6N2E2_3121 0.17 +0.9
3,611,223 + Pf6N2E2_3121 0.17 +0.3
3,611,259 + Pf6N2E2_3121 0.20 +1.4
3,611,260 - Pf6N2E2_3121 0.20 -0.8
3,611,317 + Pf6N2E2_3121 0.24 +0.2
3,611,570 - Pf6N2E2_3121 0.44 +0.2
3,611,787 + Pf6N2E2_3121 0.61 +0.4
3,611,787 + Pf6N2E2_3121 0.61 +0.9
3,611,787 + Pf6N2E2_3121 0.61 +1.2
3,611,944 - Pf6N2E2_3121 0.74 +1.4
3,612,141 + Pf6N2E2_3121 0.89 +1.5
3,612,141 + Pf6N2E2_3121 0.89 -0.1
3,612,142 - Pf6N2E2_3121 0.89 +1.2
3,612,411 - Pf6N2E2_3122 0.26 +0.7
3,612,411 - Pf6N2E2_3122 0.26 +0.4
3,612,438 - Pf6N2E2_3122 0.31 -1.4
3,613,162 + Pf6N2E2_3123 0.22 +0.5
3,613,162 + Pf6N2E2_3123 0.22 +1.5
3,613,162 + Pf6N2E2_3123 0.22 +0.8
3,613,162 + Pf6N2E2_3123 0.22 -1.0
3,613,163 - Pf6N2E2_3123 0.22 +1.5
3,613,163 - Pf6N2E2_3123 0.22 +0.4
3,613,163 - Pf6N2E2_3123 0.22 +1.2
3,613,163 - Pf6N2E2_3123 0.22 +0.7
3,613,163 - Pf6N2E2_3123 0.22 +2.2
3,613,197 + Pf6N2E2_3123 0.24 +0.2
3,613,197 + Pf6N2E2_3123 0.24 -1.0
3,613,198 - Pf6N2E2_3123 0.24 +1.2
3,613,198 - Pf6N2E2_3123 0.24 +0.5
3,613,198 - Pf6N2E2_3123 0.24 +1.0
3,613,232 - Pf6N2E2_3123 0.26 +0.2

Or see this region's nucleotide sequence