Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS11850

Experiment: Sucrose (C) and L-Glutamine (N); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS11840 and PFLU_RS11845 are separated by 37 nucleotidesPFLU_RS11845 and PFLU_RS11850 are separated by 1 nucleotidesPFLU_RS11850 and PFLU_RS11855 overlap by 4 nucleotidesPFLU_RS11855 and PFLU_RS11860 are separated by 93 nucleotidesPFLU_RS11860 and PFLU_RS11865 overlap by 14 nucleotides PFLU_RS11840: PFLU_RS11840 - RNA polymerase sigma factor, at 2,624,296 to 2,624,841 _RS11840 PFLU_RS11845: PFLU_RS11845 - DUF4880 domain-containing protein, at 2,624,879 to 2,625,805 _RS11845 PFLU_RS11850: PFLU_RS11850 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 2,625,807 to 2,626,403 _RS11850 PFLU_RS11855: PFLU_RS11855 - type II secretion system protein GspH, at 2,626,400 to 2,626,852 _RS11855 PFLU_RS11860: PFLU_RS11860 - general secretion pathway protein GspC, at 2,626,946 to 2,627,377 _RS11860 PFLU_RS11865: PFLU_RS11865 - type II secretion system protein GspI, at 2,627,364 to 2,627,729 _RS11865 Position (kb) 2625 2626 2627Strain fitness (log2 ratio) -2 -1 0 1 2at 2624.839 kb on + strandat 2624.839 kb on + strandat 2624.840 kb on - strandat 2624.857 kb on - strandat 2624.869 kb on - strandat 2624.869 kb on - strandat 2624.869 kb on - strandat 2624.869 kb on - strandat 2624.869 kb on - strandat 2625.180 kb on + strand, within PFLU_RS11845at 2625.212 kb on + strand, within PFLU_RS11845at 2625.433 kb on + strand, within PFLU_RS11845at 2625.433 kb on + strand, within PFLU_RS11845at 2625.442 kb on + strand, within PFLU_RS11845at 2625.443 kb on - strand, within PFLU_RS11845at 2625.522 kb on - strand, within PFLU_RS11845at 2625.673 kb on + strand, within PFLU_RS11845at 2625.755 kb on + strandat 2625.755 kb on + strandat 2625.755 kb on + strandat 2625.833 kb on + strandat 2625.833 kb on + strandat 2625.835 kb on + strandat 2625.835 kb on + strandat 2625.835 kb on + strandat 2625.835 kb on + strandat 2625.835 kb on + strandat 2625.835 kb on + strandat 2625.835 kb on + strandat 2625.836 kb on - strandat 2625.836 kb on - strandat 2625.836 kb on - strandat 2625.836 kb on - strandat 2625.836 kb on - strandat 2625.836 kb on - strandat 2625.836 kb on - strandat 2625.912 kb on + strand, within PFLU_RS11850at 2625.913 kb on - strand, within PFLU_RS11850at 2626.220 kb on + strand, within PFLU_RS11850at 2626.220 kb on + strand, within PFLU_RS11850at 2626.511 kb on - strand, within PFLU_RS11855at 2626.857 kb on + strandat 2626.857 kb on + strandat 2626.857 kb on + strandat 2626.857 kb on + strandat 2626.858 kb on - strandat 2626.910 kb on + strandat 2626.911 kb on - strandat 2626.911 kb on - strandat 2626.963 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C) and L-Glutamine (N); with MOPS
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2,624,839 + -0.0
2,624,839 + +0.3
2,624,840 - -1.4
2,624,857 - -0.6
2,624,869 - -0.7
2,624,869 - +0.1
2,624,869 - +1.0
2,624,869 - +0.2
2,624,869 - -0.3
2,625,180 + PFLU_RS11845 0.32 +1.3
2,625,212 + PFLU_RS11845 0.36 -1.1
2,625,433 + PFLU_RS11845 0.60 -0.3
2,625,433 + PFLU_RS11845 0.60 -0.0
2,625,442 + PFLU_RS11845 0.61 -0.8
2,625,443 - PFLU_RS11845 0.61 +1.4
2,625,522 - PFLU_RS11845 0.69 +0.6
2,625,673 + PFLU_RS11845 0.86 +0.3
2,625,755 + +0.1
2,625,755 + -0.7
2,625,755 + -1.7
2,625,833 + -0.2
2,625,833 + +2.0
2,625,835 + +0.7
2,625,835 + +0.2
2,625,835 + -0.4
2,625,835 + +0.6
2,625,835 + -0.6
2,625,835 + -1.3
2,625,835 + -0.7
2,625,836 - -0.4
2,625,836 - +1.2
2,625,836 - -0.5
2,625,836 - +0.8
2,625,836 - +0.4
2,625,836 - -0.7
2,625,836 - -1.4
2,625,912 + PFLU_RS11850 0.18 -1.9
2,625,913 - PFLU_RS11850 0.18 -0.4
2,626,220 + PFLU_RS11850 0.69 +0.8
2,626,220 + PFLU_RS11850 0.69 -0.3
2,626,511 - PFLU_RS11855 0.25 -0.2
2,626,857 + -0.1
2,626,857 + +0.5
2,626,857 + -1.2
2,626,857 + -2.1
2,626,858 - +0.7
2,626,910 + -0.9
2,626,911 - +1.0
2,626,911 - -0.2
2,626,963 + +0.3

Or see this region's nucleotide sequence