Experiment: Sucrose (C) and L-Glutamine (N); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS03990 and PFLU_RS03995 are separated by 129 nucleotides PFLU_RS03995 and PFLU_RS04000 overlap by 51 nucleotides PFLU_RS04000 and PFLU_RS04005 are separated by 2 nucleotides
PFLU_RS03990: PFLU_RS03990 - methyl-accepting chemotaxis protein, at 900,473 to 902,503
_RS03990
PFLU_RS03995: PFLU_RS03995 - hypothetical protein, at 902,633 to 903,061
_RS03995
PFLU_RS04000: PFLU_RS04000 - TatD family hydrolase, at 903,011 to 903,787
_RS04000
PFLU_RS04005: PFLU_RS04005 - catabolite repressor/activator, at 903,790 to 904,785
_RS04005
Position (kb) 902
903
904 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 901.993 kb on + strand, within PFLU_RS03990 at 901.993 kb on + strand, within PFLU_RS03990 at 901.994 kb on - strand, within PFLU_RS03990 at 901.998 kb on + strand, within PFLU_RS03990 at 901.999 kb on - strand, within PFLU_RS03990 at 901.999 kb on - strand, within PFLU_RS03990 at 901.999 kb on - strand, within PFLU_RS03990 at 902.202 kb on + strand, within PFLU_RS03990 at 902.203 kb on - strand, within PFLU_RS03990 at 902.203 kb on - strand, within PFLU_RS03990 at 902.281 kb on + strand, within PFLU_RS03990 at 902.405 kb on + strand at 902.405 kb on + strand at 902.501 kb on + strand at 902.501 kb on + strand at 902.501 kb on + strand at 902.502 kb on - strand at 902.521 kb on + strand at 902.521 kb on + strand at 902.521 kb on + strand at 902.521 kb on + strand at 902.521 kb on + strand at 902.521 kb on + strand at 902.521 kb on + strand at 902.522 kb on - strand at 902.522 kb on - strand at 902.522 kb on - strand at 902.522 kb on - strand at 902.536 kb on + strand at 902.536 kb on + strand at 902.536 kb on + strand at 902.536 kb on + strand at 902.536 kb on + strand at 902.536 kb on + strand at 902.536 kb on + strand at 902.536 kb on + strand at 902.537 kb on - strand at 902.537 kb on - strand at 902.537 kb on - strand at 902.537 kb on - strand at 902.537 kb on - strand at 902.537 kb on - strand at 902.537 kb on - strand at 902.678 kb on - strand, within PFLU_RS03995 at 902.744 kb on + strand, within PFLU_RS03995 at 902.958 kb on - strand, within PFLU_RS03995 at 903.013 kb on - strand at 903.059 kb on + strand at 903.157 kb on + strand, within PFLU_RS04000 at 903.220 kb on + strand, within PFLU_RS04000 at 903.220 kb on + strand, within PFLU_RS04000 at 903.221 kb on - strand, within PFLU_RS04000 at 903.221 kb on - strand, within PFLU_RS04000 at 903.282 kb on + strand, within PFLU_RS04000 at 903.282 kb on + strand, within PFLU_RS04000 at 903.282 kb on + strand, within PFLU_RS04000 at 903.282 kb on + strand, within PFLU_RS04000 at 903.283 kb on - strand, within PFLU_RS04000 at 903.283 kb on - strand, within PFLU_RS04000 at 903.283 kb on - strand, within PFLU_RS04000 at 903.283 kb on - strand, within PFLU_RS04000 at 903.283 kb on - strand, within PFLU_RS04000 at 903.283 kb on - strand, within PFLU_RS04000 at 903.283 kb on - strand, within PFLU_RS04000 at 903.386 kb on + strand, within PFLU_RS04000 at 903.386 kb on + strand, within PFLU_RS04000 at 903.386 kb on + strand, within PFLU_RS04000 at 903.386 kb on + strand, within PFLU_RS04000 at 903.386 kb on + strand, within PFLU_RS04000 at 903.386 kb on + strand, within PFLU_RS04000 at 903.386 kb on + strand, within PFLU_RS04000 at 903.386 kb on + strand, within PFLU_RS04000 at 903.386 kb on + strand, within PFLU_RS04000 at 903.386 kb on + strand, within PFLU_RS04000 at 903.386 kb on + strand, within PFLU_RS04000 at 903.386 kb on + strand, within PFLU_RS04000 at 903.386 kb on + strand, within PFLU_RS04000 at 903.386 kb on + strand, within PFLU_RS04000 at 903.386 kb on + strand, within PFLU_RS04000 at 903.387 kb on - strand, within PFLU_RS04000 at 903.387 kb on - strand, within PFLU_RS04000 at 903.387 kb on - strand, within PFLU_RS04000 at 903.387 kb on - strand, within PFLU_RS04000 at 903.387 kb on - strand, within PFLU_RS04000 at 903.387 kb on - strand, within PFLU_RS04000 at 903.387 kb on - strand, within PFLU_RS04000 at 903.387 kb on - strand, within PFLU_RS04000 at 903.387 kb on - strand, within PFLU_RS04000 at 903.387 kb on - strand, within PFLU_RS04000 at 903.387 kb on - strand, within PFLU_RS04000 at 903.387 kb on - strand, within PFLU_RS04000 at 903.387 kb on - strand, within PFLU_RS04000 at 903.387 kb on - strand, within PFLU_RS04000 at 903.387 kb on - strand, within PFLU_RS04000 at 903.387 kb on - strand, within PFLU_RS04000 at 903.387 kb on - strand, within PFLU_RS04000 at 903.387 kb on - strand, within PFLU_RS04000 at 903.387 kb on - strand, within PFLU_RS04000 at 903.387 kb on - strand, within PFLU_RS04000 at 903.387 kb on - strand, within PFLU_RS04000 at 903.387 kb on - strand, within PFLU_RS04000 at 903.483 kb on + strand, within PFLU_RS04000 at 903.483 kb on + strand, within PFLU_RS04000 at 903.483 kb on + strand, within PFLU_RS04000 at 903.484 kb on - strand, within PFLU_RS04000 at 903.484 kb on - strand, within PFLU_RS04000 at 903.484 kb on - strand, within PFLU_RS04000 at 903.484 kb on - strand, within PFLU_RS04000 at 903.588 kb on + strand, within PFLU_RS04000 at 903.588 kb on + strand, within PFLU_RS04000 at 903.589 kb on - strand, within PFLU_RS04000 at 903.589 kb on - strand, within PFLU_RS04000 at 903.600 kb on - strand, within PFLU_RS04000 at 903.600 kb on - strand, within PFLU_RS04000 at 903.617 kb on + strand, within PFLU_RS04000 at 903.617 kb on + strand, within PFLU_RS04000 at 903.617 kb on + strand, within PFLU_RS04000 at 903.618 kb on - strand, within PFLU_RS04000 at 903.669 kb on + strand, within PFLU_RS04000 at 903.669 kb on + strand, within PFLU_RS04000 at 903.669 kb on + strand, within PFLU_RS04000 at 903.669 kb on + strand, within PFLU_RS04000 at 903.669 kb on + strand, within PFLU_RS04000 at 903.670 kb on - strand, within PFLU_RS04000 at 903.670 kb on - strand, within PFLU_RS04000 at 903.670 kb on - strand, within PFLU_RS04000 at 903.670 kb on - strand, within PFLU_RS04000 at 903.670 kb on - strand, within PFLU_RS04000 at 903.670 kb on - strand, within PFLU_RS04000 at 903.670 kb on - strand, within PFLU_RS04000 at 903.670 kb on - strand, within PFLU_RS04000 at 903.804 kb on + strand at 903.804 kb on + strand at 903.835 kb on + strand at 903.835 kb on + strand at 903.835 kb on + strand at 903.835 kb on + strand at 903.835 kb on + strand at 903.836 kb on - strand at 903.836 kb on - strand at 903.836 kb on - strand at 903.836 kb on - strand at 903.836 kb on - strand at 903.848 kb on + strand at 903.848 kb on + strand at 903.960 kb on + strand, within PFLU_RS04005 at 903.960 kb on + strand, within PFLU_RS04005 at 904.043 kb on + strand, within PFLU_RS04005 at 904.043 kb on + strand, within PFLU_RS04005 at 904.043 kb on + strand, within PFLU_RS04005 at 904.043 kb on + strand, within PFLU_RS04005 at 904.043 kb on + strand, within PFLU_RS04005 at 904.043 kb on + strand, within PFLU_RS04005 at 904.043 kb on + strand, within PFLU_RS04005 at 904.043 kb on + strand, within PFLU_RS04005 at 904.043 kb on + strand, within PFLU_RS04005 at 904.043 kb on + strand, within PFLU_RS04005 at 904.043 kb on + strand, within PFLU_RS04005 at 904.043 kb on + strand, within PFLU_RS04005 at 904.043 kb on + strand, within PFLU_RS04005 at 904.043 kb on + strand, within PFLU_RS04005 at 904.043 kb on + strand, within PFLU_RS04005 at 904.043 kb on + strand, within PFLU_RS04005 at 904.043 kb on + strand, within PFLU_RS04005 at 904.043 kb on + strand, within PFLU_RS04005 at 904.043 kb on + strand, within PFLU_RS04005 at 904.043 kb on + strand, within PFLU_RS04005 at 904.043 kb on + strand, within PFLU_RS04005 at 904.043 kb on + strand, within PFLU_RS04005 at 904.043 kb on + strand, within PFLU_RS04005 at 904.043 kb on + strand, within PFLU_RS04005 at 904.044 kb on - strand, within PFLU_RS04005 at 904.044 kb on - strand, within PFLU_RS04005 at 904.044 kb on - strand, within PFLU_RS04005 at 904.044 kb on - strand, within PFLU_RS04005 at 904.044 kb on - strand, within PFLU_RS04005 at 904.044 kb on - strand, within PFLU_RS04005 at 904.044 kb on - strand, within PFLU_RS04005 at 904.044 kb on - strand, within PFLU_RS04005 at 904.044 kb on - strand, within PFLU_RS04005 at 904.044 kb on - strand, within PFLU_RS04005 at 904.044 kb on - strand, within PFLU_RS04005 at 904.044 kb on - strand, within PFLU_RS04005 at 904.044 kb on - strand, within PFLU_RS04005 at 904.044 kb on - strand, within PFLU_RS04005 at 904.044 kb on - strand, within PFLU_RS04005 at 904.044 kb on - strand, within PFLU_RS04005 at 904.044 kb on - strand, within PFLU_RS04005 at 904.044 kb on - strand, within PFLU_RS04005 at 904.044 kb on - strand, within PFLU_RS04005
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) and L-Glutamine (N); with MOPS remove 901,993 + PFLU_RS03990 0.75 -0.8 901,993 + PFLU_RS03990 0.75 +0.1 901,994 - PFLU_RS03990 0.75 -0.1 901,998 + PFLU_RS03990 0.75 -0.7 901,999 - PFLU_RS03990 0.75 -0.8 901,999 - PFLU_RS03990 0.75 +0.3 901,999 - PFLU_RS03990 0.75 -0.9 902,202 + PFLU_RS03990 0.85 +0.5 902,203 - PFLU_RS03990 0.85 -0.0 902,203 - PFLU_RS03990 0.85 -1.3 902,281 + PFLU_RS03990 0.89 +1.3 902,405 + -0.4 902,405 + +0.0 902,501 + -1.0 902,501 + +0.6 902,501 + -1.7 902,502 - -0.4 902,521 + +1.8 902,521 + +0.3 902,521 + -1.2 902,521 + -0.6 902,521 + +0.2 902,521 + +1.6 902,521 + +0.5 902,522 - -1.3 902,522 - -1.6 902,522 - -0.9 902,522 - +0.1 902,536 + +0.3 902,536 + +0.7 902,536 + -1.7 902,536 + +0.3 902,536 + -0.5 902,536 + +2.0 902,536 + -0.4 902,536 + +0.5 902,537 - -0.3 902,537 - +0.5 902,537 - -0.5 902,537 - -1.7 902,537 - +1.4 902,537 - +1.2 902,537 - +1.5 902,678 - PFLU_RS03995 0.10 -0.1 902,744 + PFLU_RS03995 0.26 -0.1 902,958 - PFLU_RS03995 0.76 -0.6 903,013 - +0.4 903,059 + +1.5 903,157 + PFLU_RS04000 0.19 +0.1 903,220 + PFLU_RS04000 0.27 -1.3 903,220 + PFLU_RS04000 0.27 -0.5 903,221 - PFLU_RS04000 0.27 +0.2 903,221 - PFLU_RS04000 0.27 -0.5 903,282 + PFLU_RS04000 0.35 +0.1 903,282 + PFLU_RS04000 0.35 -1.2 903,282 + PFLU_RS04000 0.35 +0.3 903,282 + PFLU_RS04000 0.35 -1.0 903,283 - PFLU_RS04000 0.35 -1.2 903,283 - PFLU_RS04000 0.35 -0.2 903,283 - PFLU_RS04000 0.35 +0.2 903,283 - PFLU_RS04000 0.35 -0.6 903,283 - PFLU_RS04000 0.35 -0.8 903,283 - PFLU_RS04000 0.35 -0.6 903,283 - PFLU_RS04000 0.35 -1.5 903,386 + PFLU_RS04000 0.48 +1.8 903,386 + PFLU_RS04000 0.48 -0.5 903,386 + PFLU_RS04000 0.48 -0.3 903,386 + PFLU_RS04000 0.48 -0.5 903,386 + PFLU_RS04000 0.48 +0.3 903,386 + PFLU_RS04000 0.48 +0.7 903,386 + PFLU_RS04000 0.48 -0.3 903,386 + PFLU_RS04000 0.48 -0.1 903,386 + PFLU_RS04000 0.48 -0.3 903,386 + PFLU_RS04000 0.48 +0.1 903,386 + PFLU_RS04000 0.48 +0.3 903,386 + PFLU_RS04000 0.48 -1.4 903,386 + PFLU_RS04000 0.48 +0.1 903,386 + PFLU_RS04000 0.48 -0.1 903,386 + PFLU_RS04000 0.48 -0.1 903,387 - PFLU_RS04000 0.48 -1.1 903,387 - PFLU_RS04000 0.48 -0.6 903,387 - PFLU_RS04000 0.48 +0.4 903,387 - PFLU_RS04000 0.48 +1.4 903,387 - PFLU_RS04000 0.48 -0.1 903,387 - PFLU_RS04000 0.48 -0.0 903,387 - PFLU_RS04000 0.48 +1.0 903,387 - PFLU_RS04000 0.48 +0.6 903,387 - PFLU_RS04000 0.48 -0.4 903,387 - PFLU_RS04000 0.48 +0.4 903,387 - PFLU_RS04000 0.48 -0.8 903,387 - PFLU_RS04000 0.48 -0.7 903,387 - PFLU_RS04000 0.48 -0.1 903,387 - PFLU_RS04000 0.48 -0.5 903,387 - PFLU_RS04000 0.48 +1.6 903,387 - PFLU_RS04000 0.48 +1.1 903,387 - PFLU_RS04000 0.48 -0.1 903,387 - PFLU_RS04000 0.48 -0.3 903,387 - PFLU_RS04000 0.48 -0.5 903,387 - PFLU_RS04000 0.48 -0.2 903,387 - PFLU_RS04000 0.48 +0.3 903,387 - PFLU_RS04000 0.48 -0.3 903,483 + PFLU_RS04000 0.61 -1.3 903,483 + PFLU_RS04000 0.61 -0.4 903,483 + PFLU_RS04000 0.61 -1.6 903,484 - PFLU_RS04000 0.61 +0.4 903,484 - PFLU_RS04000 0.61 -0.9 903,484 - PFLU_RS04000 0.61 +0.3 903,484 - PFLU_RS04000 0.61 +1.3 903,588 + PFLU_RS04000 0.74 +0.0 903,588 + PFLU_RS04000 0.74 +1.8 903,589 - PFLU_RS04000 0.74 +0.2 903,589 - PFLU_RS04000 0.74 -0.0 903,600 - PFLU_RS04000 0.76 +0.6 903,600 - PFLU_RS04000 0.76 +1.2 903,617 + PFLU_RS04000 0.78 -1.3 903,617 + PFLU_RS04000 0.78 +0.2 903,617 + PFLU_RS04000 0.78 -0.0 903,618 - PFLU_RS04000 0.78 -0.6 903,669 + PFLU_RS04000 0.85 -0.4 903,669 + PFLU_RS04000 0.85 -0.9 903,669 + PFLU_RS04000 0.85 +0.3 903,669 + PFLU_RS04000 0.85 +0.5 903,669 + PFLU_RS04000 0.85 -0.2 903,670 - PFLU_RS04000 0.85 -0.8 903,670 - PFLU_RS04000 0.85 -1.2 903,670 - PFLU_RS04000 0.85 +1.1 903,670 - PFLU_RS04000 0.85 +0.6 903,670 - PFLU_RS04000 0.85 -0.7 903,670 - PFLU_RS04000 0.85 +0.3 903,670 - PFLU_RS04000 0.85 +0.2 903,670 - PFLU_RS04000 0.85 -1.2 903,804 + -0.5 903,804 + +1.2 903,835 + -0.6 903,835 + -1.4 903,835 + -1.7 903,835 + -2.2 903,835 + -0.1 903,836 - -1.2 903,836 - +0.6 903,836 - +0.1 903,836 - +0.1 903,836 - -0.0 903,848 + +0.2 903,848 + +1.1 903,960 + PFLU_RS04005 0.17 +0.3 903,960 + PFLU_RS04005 0.17 -0.6 904,043 + PFLU_RS04005 0.25 -0.6 904,043 + PFLU_RS04005 0.25 +0.3 904,043 + PFLU_RS04005 0.25 +1.9 904,043 + PFLU_RS04005 0.25 -2.8 904,043 + PFLU_RS04005 0.25 -0.1 904,043 + PFLU_RS04005 0.25 +0.2 904,043 + PFLU_RS04005 0.25 +1.2 904,043 + PFLU_RS04005 0.25 +2.0 904,043 + PFLU_RS04005 0.25 -0.2 904,043 + PFLU_RS04005 0.25 +0.1 904,043 + PFLU_RS04005 0.25 +0.0 904,043 + PFLU_RS04005 0.25 -0.2 904,043 + PFLU_RS04005 0.25 -1.0 904,043 + PFLU_RS04005 0.25 -0.6 904,043 + PFLU_RS04005 0.25 +1.2 904,043 + PFLU_RS04005 0.25 -0.2 904,043 + PFLU_RS04005 0.25 -0.6 904,043 + PFLU_RS04005 0.25 -0.7 904,043 + PFLU_RS04005 0.25 +0.9 904,043 + PFLU_RS04005 0.25 +0.1 904,043 + PFLU_RS04005 0.25 -0.8 904,043 + PFLU_RS04005 0.25 +0.5 904,043 + PFLU_RS04005 0.25 -0.8 904,043 + PFLU_RS04005 0.25 +1.1 904,044 - PFLU_RS04005 0.26 +0.1 904,044 - PFLU_RS04005 0.26 +1.8 904,044 - PFLU_RS04005 0.26 -0.4 904,044 - PFLU_RS04005 0.26 +0.2 904,044 - PFLU_RS04005 0.26 -0.6 904,044 - PFLU_RS04005 0.26 -1.4 904,044 - PFLU_RS04005 0.26 +0.9 904,044 - PFLU_RS04005 0.26 -0.1 904,044 - PFLU_RS04005 0.26 -0.4 904,044 - PFLU_RS04005 0.26 -1.7 904,044 - PFLU_RS04005 0.26 +0.7 904,044 - PFLU_RS04005 0.26 +0.1 904,044 - PFLU_RS04005 0.26 -1.0 904,044 - PFLU_RS04005 0.26 -2.2 904,044 - PFLU_RS04005 0.26 -1.7 904,044 - PFLU_RS04005 0.26 -1.5 904,044 - PFLU_RS04005 0.26 -0.9 904,044 - PFLU_RS04005 0.26 +0.1 904,044 - PFLU_RS04005 0.26 +1.0
Or see this region's nucleotide sequence