Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20580 and BPHYT_RS20585 are separated by 229 nucleotides BPHYT_RS20585 and BPHYT_RS20590 are separated by 132 nucleotides BPHYT_RS20590 and BPHYT_RS20595 are separated by 162 nucleotides BPHYT_RS20595 and BPHYT_RS20600 are separated by 85 nucleotides
BPHYT_RS20580: BPHYT_RS20580 - NADH dehydrogenase, at 177,919 to 179,145
_RS20580
BPHYT_RS20585: BPHYT_RS20585 - MarR family transcriptional regulator, at 179,375 to 179,836
_RS20585
BPHYT_RS20590: BPHYT_RS20590 - methionine sulfoxide reductase A, at 179,969 to 180,475
_RS20590
BPHYT_RS20595: BPHYT_RS20595 - hypothetical protein, at 180,638 to 180,910
_RS20595
BPHYT_RS20600: BPHYT_RS20600 - peroxiredoxin, at 180,996 to 181,421
_RS20600
Position (kb) 179
180
181 Strain fitness (log2 ratio) -2
-1
0
1 at 178.991 kb on + strand, within BPHYT_RS20580 at 178.992 kb on - strand, within BPHYT_RS20580 at 178.992 kb on - strand, within BPHYT_RS20580 at 179.033 kb on - strand at 179.033 kb on - strand at 179.237 kb on - strand at 180.372 kb on + strand, within BPHYT_RS20590 at 180.373 kb on - strand, within BPHYT_RS20590 at 180.373 kb on - strand, within BPHYT_RS20590 at 180.390 kb on - strand, within BPHYT_RS20590 at 180.721 kb on - strand, within BPHYT_RS20595 at 180.816 kb on + strand, within BPHYT_RS20595 at 181.012 kb on - strand at 181.240 kb on + strand, within BPHYT_RS20600 at 181.240 kb on + strand, within BPHYT_RS20600 at 181.240 kb on + strand, within BPHYT_RS20600 at 181.241 kb on - strand, within BPHYT_RS20600
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 178,991 + BPHYT_RS20580 0.87 +0.2 178,992 - BPHYT_RS20580 0.87 +1.7 178,992 - BPHYT_RS20580 0.87 +0.2 179,033 - +0.3 179,033 - +0.2 179,237 - -2.4 180,372 + BPHYT_RS20590 0.79 -1.4 180,373 - BPHYT_RS20590 0.80 -0.4 180,373 - BPHYT_RS20590 0.80 -1.2 180,390 - BPHYT_RS20590 0.83 -0.3 180,721 - BPHYT_RS20595 0.30 +1.1 180,816 + BPHYT_RS20595 0.65 -0.2 181,012 - -0.4 181,240 + BPHYT_RS20600 0.57 +0.6 181,240 + BPHYT_RS20600 0.57 +0.2 181,240 + BPHYT_RS20600 0.57 -0.5 181,241 - BPHYT_RS20600 0.58 +1.2
Or see this region's nucleotide sequence