Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20515 and BPHYT_RS20520 are separated by 232 nucleotides BPHYT_RS20520 and BPHYT_RS20525 are separated by 76 nucleotides
BPHYT_RS20515: BPHYT_RS20515 - alpha/beta hydrolase, at 164,916 to 165,776
_RS20515
BPHYT_RS20520: BPHYT_RS20520 - transcriptional regulator, at 166,009 to 166,908
_RS20520
BPHYT_RS20525: BPHYT_RS20525 - esterase, at 166,985 to 168,571
_RS20525
Position (kb) 166
167 Strain fitness (log2 ratio) -1
0
1
2
3 at 165.067 kb on + strand, within BPHYT_RS20515 at 165.128 kb on - strand, within BPHYT_RS20515 at 165.322 kb on + strand, within BPHYT_RS20515 at 165.712 kb on + strand at 165.832 kb on + strand at 165.914 kb on + strand at 165.914 kb on + strand at 165.914 kb on + strand at 165.914 kb on + strand at 165.914 kb on + strand at 165.915 kb on - strand at 165.915 kb on - strand at 165.915 kb on - strand at 165.915 kb on - strand at 165.915 kb on - strand at 165.915 kb on - strand at 165.915 kb on - strand at 165.915 kb on - strand at 165.919 kb on + strand at 165.973 kb on + strand at 165.979 kb on + strand at 165.980 kb on - strand at 165.980 kb on - strand at 166.031 kb on - strand at 166.478 kb on - strand, within BPHYT_RS20520 at 166.821 kb on + strand at 166.822 kb on - strand at 166.833 kb on + strand at 166.834 kb on - strand at 166.920 kb on + strand at 166.924 kb on + strand at 166.925 kb on - strand at 166.927 kb on - strand at 166.992 kb on + strand at 166.992 kb on + strand at 166.992 kb on + strand at 166.992 kb on + strand at 166.992 kb on + strand at 166.993 kb on - strand at 166.993 kb on - strand at 167.194 kb on - strand, within BPHYT_RS20525 at 167.194 kb on - strand, within BPHYT_RS20525 at 167.266 kb on + strand, within BPHYT_RS20525 at 167.343 kb on - strand, within BPHYT_RS20525 at 167.386 kb on + strand, within BPHYT_RS20525 at 167.450 kb on + strand, within BPHYT_RS20525 at 167.450 kb on + strand, within BPHYT_RS20525 at 167.451 kb on - strand, within BPHYT_RS20525 at 167.466 kb on - strand, within BPHYT_RS20525 at 167.466 kb on - strand, within BPHYT_RS20525 at 167.486 kb on + strand, within BPHYT_RS20525 at 167.486 kb on + strand, within BPHYT_RS20525 at 167.741 kb on + strand, within BPHYT_RS20525 at 167.848 kb on + strand, within BPHYT_RS20525 at 167.849 kb on - strand, within BPHYT_RS20525 at 167.852 kb on + strand, within BPHYT_RS20525 at 167.873 kb on + strand, within BPHYT_RS20525 at 167.874 kb on - strand, within BPHYT_RS20525
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 165,067 + BPHYT_RS20515 0.18 +0.3 165,128 - BPHYT_RS20515 0.25 -0.1 165,322 + BPHYT_RS20515 0.47 +0.5 165,712 + +0.5 165,832 + +1.1 165,914 + +1.0 165,914 + -0.8 165,914 + +1.2 165,914 + -0.6 165,914 + +0.2 165,915 - -0.3 165,915 - -0.3 165,915 - +1.9 165,915 - -0.4 165,915 - +0.5 165,915 - -0.3 165,915 - +3.1 165,915 - +0.0 165,919 + +0.7 165,973 + -1.6 165,979 + -1.4 165,980 - +1.7 165,980 - -0.4 166,031 - +0.7 166,478 - BPHYT_RS20520 0.52 +1.3 166,821 + +2.3 166,822 - -0.3 166,833 + +1.1 166,834 - +1.2 166,920 + -0.4 166,924 + -0.1 166,925 - +0.0 166,927 - +0.1 166,992 + +0.5 166,992 + -0.1 166,992 + -0.3 166,992 + +0.7 166,992 + -0.8 166,993 - +1.4 166,993 - +0.1 167,194 - BPHYT_RS20525 0.13 +0.2 167,194 - BPHYT_RS20525 0.13 -1.3 167,266 + BPHYT_RS20525 0.18 +0.5 167,343 - BPHYT_RS20525 0.23 -0.7 167,386 + BPHYT_RS20525 0.25 +0.9 167,450 + BPHYT_RS20525 0.29 +0.2 167,450 + BPHYT_RS20525 0.29 -0.8 167,451 - BPHYT_RS20525 0.29 -1.2 167,466 - BPHYT_RS20525 0.30 +0.2 167,466 - BPHYT_RS20525 0.30 +0.5 167,486 + BPHYT_RS20525 0.32 +0.6 167,486 + BPHYT_RS20525 0.32 +0.7 167,741 + BPHYT_RS20525 0.48 +1.3 167,848 + BPHYT_RS20525 0.54 +0.3 167,849 - BPHYT_RS20525 0.54 +0.0 167,852 + BPHYT_RS20525 0.55 -1.0 167,873 + BPHYT_RS20525 0.56 -0.6 167,874 - BPHYT_RS20525 0.56 +0.1
Or see this region's nucleotide sequence