Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03145 and BPHYT_RS03150 are separated by 504 nucleotides BPHYT_RS03150 and BPHYT_RS03155 are separated by 34 nucleotides BPHYT_RS03155 and BPHYT_RS03160 are separated by 84 nucleotides
BPHYT_RS03145: BPHYT_RS03145 - threonine dehydratase, at 702,957 to 704,480
_RS03145
BPHYT_RS03150: BPHYT_RS03150 - Phosphoglycerate dehydrogenase (EC:1.1.1.95) <small>(from data)</small>, at 704,985 to 709,079
_RS03150
BPHYT_RS03155: BPHYT_RS03155 - histidine triad (HIT) protein, at 709,114 to 709,542
_RS03155
BPHYT_RS03160: BPHYT_RS03160 - hypothetical protein, at 709,627 to 710,040
_RS03160
Position (kb) 704
705
706
707
708
709
710 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 704.539 kb on + strand at 704.540 kb on - strand at 704.708 kb on - strand at 704.830 kb on + strand at 704.835 kb on - strand at 704.835 kb on - strand at 704.835 kb on - strand at 704.835 kb on - strand at 704.836 kb on + strand at 704.837 kb on - strand at 704.837 kb on - strand at 704.895 kb on + strand at 704.968 kb on + strand at 704.968 kb on + strand at 705.075 kb on + strand at 705.076 kb on - strand at 705.675 kb on - strand, within BPHYT_RS03150 at 706.089 kb on + strand, within BPHYT_RS03150 at 706.089 kb on + strand, within BPHYT_RS03150 at 706.090 kb on - strand, within BPHYT_RS03150 at 706.090 kb on - strand, within BPHYT_RS03150 at 706.275 kb on - strand, within BPHYT_RS03150 at 706.348 kb on - strand, within BPHYT_RS03150 at 706.950 kb on + strand, within BPHYT_RS03150 at 706.950 kb on + strand, within BPHYT_RS03150 at 706.951 kb on - strand, within BPHYT_RS03150 at 706.951 kb on - strand, within BPHYT_RS03150 at 706.951 kb on - strand, within BPHYT_RS03150 at 707.026 kb on + strand, within BPHYT_RS03150 at 707.026 kb on + strand, within BPHYT_RS03150 at 707.027 kb on - strand, within BPHYT_RS03150 at 707.027 kb on - strand, within BPHYT_RS03150 at 707.245 kb on - strand, within BPHYT_RS03150 at 707.391 kb on + strand, within BPHYT_RS03150 at 707.392 kb on - strand, within BPHYT_RS03150 at 707.392 kb on - strand, within BPHYT_RS03150 at 707.494 kb on - strand, within BPHYT_RS03150 at 707.494 kb on - strand, within BPHYT_RS03150 at 707.617 kb on - strand, within BPHYT_RS03150 at 707.628 kb on - strand, within BPHYT_RS03150 at 707.813 kb on + strand, within BPHYT_RS03150 at 708.181 kb on - strand, within BPHYT_RS03150 at 708.181 kb on - strand, within BPHYT_RS03150 at 708.282 kb on + strand, within BPHYT_RS03150 at 708.282 kb on + strand, within BPHYT_RS03150 at 708.297 kb on + strand, within BPHYT_RS03150 at 708.549 kb on + strand, within BPHYT_RS03150 at 708.640 kb on - strand, within BPHYT_RS03150 at 708.949 kb on - strand at 708.949 kb on - strand at 708.978 kb on + strand at 708.979 kb on - strand at 709.032 kb on + strand at 709.032 kb on + strand at 709.294 kb on + strand, within BPHYT_RS03155 at 709.491 kb on + strand at 709.492 kb on - strand, within BPHYT_RS03155 at 709.492 kb on - strand, within BPHYT_RS03155 at 709.492 kb on - strand, within BPHYT_RS03155 at 709.616 kb on - strand at 709.626 kb on + strand at 709.626 kb on + strand at 709.705 kb on + strand, within BPHYT_RS03160 at 709.706 kb on - strand, within BPHYT_RS03160 at 709.754 kb on - strand, within BPHYT_RS03160 at 709.754 kb on - strand, within BPHYT_RS03160 at 709.823 kb on + strand, within BPHYT_RS03160 at 709.856 kb on - strand, within BPHYT_RS03160 at 709.900 kb on + strand, within BPHYT_RS03160 at 709.900 kb on + strand, within BPHYT_RS03160 at 709.900 kb on + strand, within BPHYT_RS03160 at 710.041 kb on + strand at 710.041 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 704,539 + -0.9 704,540 - +0.8 704,708 - -1.5 704,830 + -0.1 704,835 - -6.4 704,835 - -3.6 704,835 - -1.1 704,835 - -3.8 704,836 + -0.3 704,837 - -2.7 704,837 - -4.4 704,895 + -0.3 704,968 + +0.0 704,968 + -0.4 705,075 + -4.6 705,076 - -1.7 705,675 - BPHYT_RS03150 0.17 -2.7 706,089 + BPHYT_RS03150 0.27 -4.1 706,089 + BPHYT_RS03150 0.27 +0.5 706,090 - BPHYT_RS03150 0.27 -4.7 706,090 - BPHYT_RS03150 0.27 -3.6 706,275 - BPHYT_RS03150 0.32 -2.9 706,348 - BPHYT_RS03150 0.33 -3.9 706,950 + BPHYT_RS03150 0.48 -4.8 706,950 + BPHYT_RS03150 0.48 -0.1 706,951 - BPHYT_RS03150 0.48 -3.6 706,951 - BPHYT_RS03150 0.48 -3.3 706,951 - BPHYT_RS03150 0.48 -5.2 707,026 + BPHYT_RS03150 0.50 -4.4 707,026 + BPHYT_RS03150 0.50 +0.7 707,027 - BPHYT_RS03150 0.50 -0.8 707,027 - BPHYT_RS03150 0.50 -2.4 707,245 - BPHYT_RS03150 0.55 -2.2 707,391 + BPHYT_RS03150 0.59 -2.6 707,392 - BPHYT_RS03150 0.59 -4.6 707,392 - BPHYT_RS03150 0.59 -3.2 707,494 - BPHYT_RS03150 0.61 -4.7 707,494 - BPHYT_RS03150 0.61 -5.1 707,617 - BPHYT_RS03150 0.64 -0.8 707,628 - BPHYT_RS03150 0.65 -6.4 707,813 + BPHYT_RS03150 0.69 -4.9 708,181 - BPHYT_RS03150 0.78 -5.0 708,181 - BPHYT_RS03150 0.78 -2.2 708,282 + BPHYT_RS03150 0.81 -4.4 708,282 + BPHYT_RS03150 0.81 -3.2 708,297 + BPHYT_RS03150 0.81 -2.2 708,549 + BPHYT_RS03150 0.87 -2.3 708,640 - BPHYT_RS03150 0.89 -5.6 708,949 - -4.6 708,949 - -3.5 708,978 + -0.8 708,979 - -3.9 709,032 + -3.4 709,032 + -3.4 709,294 + BPHYT_RS03155 0.42 +3.1 709,491 + +2.5 709,492 - BPHYT_RS03155 0.88 -0.4 709,492 - BPHYT_RS03155 0.88 +1.6 709,492 - BPHYT_RS03155 0.88 +0.4 709,616 - +0.4 709,626 + +1.2 709,626 + +0.1 709,705 + BPHYT_RS03160 0.19 -0.6 709,706 - BPHYT_RS03160 0.19 +1.3 709,754 - BPHYT_RS03160 0.31 +0.6 709,754 - BPHYT_RS03160 0.31 +0.4 709,823 + BPHYT_RS03160 0.47 +0.6 709,856 - BPHYT_RS03160 0.55 +0.5 709,900 + BPHYT_RS03160 0.66 +1.1 709,900 + BPHYT_RS03160 0.66 +0.6 709,900 + BPHYT_RS03160 0.66 -0.4 710,041 + -0.1 710,041 + -1.0
Or see this region's nucleotide sequence