Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_28945

Experiment: Nitrate reduction, replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B
6,290,991	-				+0.4
6,291,090	+		AO353_28940	0.52	+1.0
6,291,090	+		AO353_28940	0.52	+0.4
6,291,090	+		AO353_28940	0.52	+1.0
6,291,090	+		AO353_28940	0.52	-0.6
6,291,090	+		AO353_28940	0.52	+1.0
6,291,090	+		AO353_28940	0.52	+2.0
6,291,090	+		AO353_28940	0.52	+2.0
6,291,090	+		AO353_28940	0.52	-0.8
6,291,090	+		AO353_28940	0.52	-1.1
6,291,091	-		AO353_28940	0.52	+1.0
6,291,091	-		AO353_28940	0.52	+0.7
6,291,091	-		AO353_28940	0.52	-1.7
6,291,091	-		AO353_28940	0.52	-0.1
6,291,091	-		AO353_28940	0.52	+1.0
6,291,091	-		AO353_28940	0.52	-2.5
6,291,162	-		AO353_28940	0.56	+0.4
6,291,404	+		AO353_28940	0.69	-1.0
6,291,404	+		AO353_28940	0.69	+1.0
6,291,417	+		AO353_28940	0.70	+1.0
6,291,417	+		AO353_28940	0.70	-0.7
6,291,418	-		AO353_28940	0.70	+1.3
6,291,463	+		AO353_28940	0.73	+3.0
6,291,464	-		AO353_28940	0.73	-0.2
6,291,464	-		AO353_28940	0.73	+2.0
6,291,473	+		AO353_28940	0.73	+0.0
6,291,473	+		AO353_28940	0.73	+1.0
6,291,473	+		AO353_28940	0.73	-0.5
6,291,473	+		AO353_28940	0.73	-1.5
6,291,474	-		AO353_28940	0.73	-1.0
6,291,474	-		AO353_28940	0.73	-1.5
6,291,635	+		AO353_28940	0.82	-0.6
6,291,635	+		AO353_28940	0.82	+2.0
6,291,636	-		AO353_28940	0.82	+0.4
6,291,636	-		AO353_28940	0.82	+0.5
6,291,704	+		AO353_28940	0.86	+0.0
6,291,704	+		AO353_28940	0.86	+0.4
6,291,705	-		AO353_28940	0.86	+1.4
6,291,736	-		AO353_28940	0.88	-1.7
6,291,849	+				+1.0
6,291,849	+				-1.0
6,291,890	+				-0.9
6,291,890	+				-0.3
6,291,890	+				+0.0
6,291,890	+				-1.9
6,291,890	+				-1.6
6,291,890	+				+0.4
6,291,890	+				+1.0
6,291,890	+				+0.3
6,291,890	+				+0.4
6,291,891	-				+0.2
6,291,891	-				-0.3
6,291,891	-				+2.0
6,291,891	-				-2.4
6,291,891	-				+0.4
6,291,891	-				+1.4
6,291,891	-				-1.5
6,291,891	-				-1.3
6,291,965	+				-0.1
6,291,965	+				-1.1
6,291,965	+				-1.1
6,291,965	+				+0.6
6,291,965	+				-1.3
6,291,965	+				+0.9
6,291,965	+				-0.3
6,291,966	-				-0.8
6,291,966	-				-1.0
6,291,966	-				-1.7
6,291,966	-				-1.3
6,291,966	-				-0.5
6,291,966	-				-2.2
6,291,998	-				+2.3
6,292,074	+				+0.3
6,292,075	-				-1.0
6,292,075	-				+0.0
6,292,179	-		AO353_28945	0.11	-0.7
6,293,270	+		AO353_28945	0.63	-0.6
6,293,502	+		AO353_28945	0.74	-0.6
6,293,502	+		AO353_28945	0.74	-0.2
6,293,503	-		AO353_28945	0.74	-0.3
6,293,745	+		AO353_28945	0.86	+1.0
6,293,782	-		AO353_28945	0.88	-1.3
6,293,867	+				-1.3
6,293,908	-				-1.5
6,293,956	-				+0.3
6,294,041	+				+0.0
6,294,041	+				-1.0
6,294,041	+				-1.3
6,294,042	-				+0.5
6,294,042	-				+0.5
6,294,047	+				-1.2
6,294,047	+				-0.2
6,294,047	+				-2.4
6,294,047	+				+0.0
6,294,047	+				-0.6
6,294,047	+				+0.0
6,294,047	+				-0.1
6,294,048	-				+0.6
6,294,048	-				-0.5
6,294,048	-				-2.1
6,294,048	-				+1.0
6,294,048	-				+1.0
6,294,048	-				-0.3
6,294,048	-				-1.0
6,294,048	-				+0.4
6,294,052	+				+0.4
6,294,052	+				+0.0
6,294,052	+				-1.2
6,294,052	+				+1.0
6,294,052	+				+2.0
6,294,052	+				+0.0
6,294,052	+				+0.0
6,294,052	+				+0.1
6,294,052	+				-1.2
6,294,052	+				-1.2
6,294,052	+				+1.0
6,294,052	+				-1.2
6,294,052	+				-0.1
6,294,053	-				-0.8
6,294,053	-				-1.6
6,294,053	-				-0.6
6,294,053	-				+1.0
6,294,053	-				+2.0
6,294,053	-				-1.5
6,294,053	-				+0.7
6,294,053	-				+1.6
6,294,053	-				+0.4
6,294,114	+		AO353_28950	0.12	-2.0
6,294,114	+		AO353_28950	0.12	-1.8
6,294,192	-		AO353_28950	0.25	-0.2
6,294,240	+		AO353_28950	0.34	-1.2
6,294,241	-		AO353_28950	0.34	-0.3
6,294,241	-		AO353_28950	0.34	+1.0
6,294,241	-		AO353_28950	0.34	+0.7
6,294,279	+		AO353_28950	0.40	+1.0
6,294,279	+		AO353_28950	0.40	+1.0
6,294,279	+		AO353_28950	0.40	+0.7
6,294,279	+		AO353_28950	0.40	+1.0
6,294,280	-		AO353_28950	0.40	-1.2
6,294,414	+		AO353_28950	0.64	+0.3
6,294,414	+		AO353_28950	0.64	-0.5
6,294,415	-		AO353_28950	0.64	-1.7
6,294,444	-		AO353_28950	0.69	-0.7
6,294,465	+		AO353_28950	0.73	-1.3
6,294,466	-		AO353_28950	0.73	-0.6
6,294,674	+				+0.4
6,294,675	-				-1.3
6,294,763	+				+1.3
6,294,763	+				-0.1
6,294,764	-				-0.6
6,294,764	-				+0.5
6,294,878	+				+0.2
6,294,878	+				+0.4
6,294,878	+				+0.2
6,294,878	+				-1.3
6,294,878	+				+1.4
6,294,878	+				+2.0
6,294,879	-				+0.0
6,294,879	-				-1.9
6,294,879	-				-0.8
6,294,912	+				+0.9
6,294,912	+				+0.2
6,294,912	+				-0.2
6,294,912	+				+0.4
6,294,912	+				-1.2
6,294,913	-		AO353_28955	0.10	-1.9
6,294,913	-		AO353_28955	0.10	-2.2
6,294,913	-		AO353_28955	0.10	+1.0
6,295,031	+		AO353_28955	0.14	-0.3
6,295,031	+		AO353_28955	0.14	+1.6
6,295,031	+		AO353_28955	0.14	-1.2
6,295,032	-		AO353_28955	0.14	-0.1
6,295,032	-		AO353_28955	0.14	-0.5
6,295,032	-		AO353_28955	0.14	-0.2
6,295,032	-		AO353_28955	0.14	+1.0
6,295,032	-		AO353_28955	0.14	+0.9
6,295,032	-		AO353_28955	0.14	+3.0